EWM27824.1, cds2850 (CDS) Nannochloropsis gaditana

Overview
NameEWM27824.1
Unique Namecds2850
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:92134..92166 +
Alignment locationCM002460.1:92572..92706 +
Alignment locationCM002460.1:92854..93021 +
Alignment locationCM002460.1:93229..93309 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27824.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100989g2.4777.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:92134..92166 +
CM002460.1supercontigCM002460.1:92572..92706 +
CM002460.1supercontigCM002460.1:92854..93021 +
CM002460.1supercontigCM002460.1:93229..93309 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM27824.1 vs. NCBI_GenBank
Match: gi|585110144|gb|EWM27824.1| (hypothetical protein Naga_100989g2 [Nannochloropsis gaditana])

HSP 1 Score: 271.937 bits (694), Expect = 3.121e-92
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 
Query:    1 MATFPGSSSTKNEPPSCMQPLLHALADVEAQKGRQRQDEALREVLRHFQAWEYEEKADLQQDWQPALELLHTSLTHTLASHPSLVLVPSPSSPVASPSAFTVTPPGKKREKEPFGFPVLTPLPSFPPSLPPSLPPSLP 138
            MATFPGSSSTKNEPPSCMQPLLHALADVEAQKGRQRQDEALREVLRHFQAWEYEEKADLQQDWQPALELLHTSLTHTLASHPSLVLVPSPSSPVASPSAFTVTPPGKKREKEPFGFPVLTPLPSFPPSLPPSLPPSLP
Sbjct:    1 MATFPGSSSTKNEPPSCMQPLLHALADVEAQKGRQRQDEALREVLRHFQAWEYEEKADLQQDWQPALELLHTSLTHTLASHPSLVLVPSPSSPVASPSAFTVTPPGKKREKEPFGFPVLTPLPSFPPSLPPSLPPSLP 138
The following BLAST results are available for this feature:
BLAST of EWM27824.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110144|gb|EWM27824.1|3.121e-92100.00hypothetical protein Naga_100989g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2858rna2858Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications