rna2857, rna2857 (mRNA) Nannochloropsis gaditana

Overview
Namerna2857
Unique Namerna2857
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length441
Alignment locationCM002460.1:89536..90989 -

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Properties
Property NameValue
Productchlorophyll synthetase
Orig transcript idgnl|cribi|Naga_100989g1.4776.mrna
Orig protein idgnl|cribi|Naga_100989g1.4776
GeneCHS
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:89536..90989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CHSgene2733Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2857rna2857-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27823.1cds2849Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2857 ID=rna2857|Name=rna2857|organism=Nannochloropsis gaditana|type=mRNA|length=441bp
ATGGTAGTTTCTGGTGACCTGGCCGGGCTTGGCATCGCCATCGTCAACGA
TTTTAAATCCATCGAGGGAGACCGGGCCATGGGCCTGCAGTCCCTCCCCG
TCGCGTTCGGAATCGACGCCGCCAAGTGGATCTGCGTGGGAACCATCGAC
GTGACCCAGCTCGGTGTCGCTGGCTATCTAGCGTATATCGGAGAGACAGC
GTACGCCCTCGCACTCCTGGGGCTGATATTGCCGCAAATCTTCTTTCAAT
TCAAATACTTCTTGAAGGACCCCATAGAGTACGACGTCAAATACCAGGCG
AGTGCGCAGCCTTTCCTTGTGCTGGGCATCTTGACGACGGCATTGGCTGT
GGACAAACGTCGCGGGGATCGAAAGCCTATTTATGACACCGGCCGGGCTC
CCAGAGAAGCTATTGTTTCACTTATGACTCGTCGGGCATAA
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protein sequence of rna2857

>rna2857-protein ID=rna2857-protein|Name=rna2857|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKV
ASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMK
PVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTC
MVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG
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mRNA from alignment at CM002460.1:89536..90989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2857 ID=rna2857|Name=rna2857|organism=Nannochloropsis gaditana|type=mRNA|length=1454bp|location=Sequence derived from alignment at CM002460.1:89536..90989- (Nannochloropsis gaditana)
GCCAGACAGGATAATTCCCAAGCAAACAAAAAATGCGGCATATTCTGTCC
TTGTTTTTGGCACCGACGCTTATGGTGACGGGCTTTCTGTTGCCTCGTCT
GCCTCAGGTATGGAAGAGGAAAGAGGAACGATCGCGCACAATTTTTTTTT
GGCTCTTACTTTTTGCCAGAGAGTTGACCATGAACATTTATATCAGCCAT
ATTATATGTTTTGAGATGGTTGTTGTTGGTGGGCTTTTGTTCAAAAGCAT
GTCGCTGGTTGGCTTTGGGAGTCATTTTTGCAATATCTTCCCTTTTCCTA
GTACCATACCACTAGCCGTGCTGCTTCGCCTTTGCGCATGGTCCTCCCAT
CTGCCAAGGAGGGAAAAGGAAAAGTGGCATCCTTCTACCCCTTTGAAACG
TCTTTGGGCGTTAAAGGAAAGAAGGACAACAGTGAAGTCGGAACCGACGC
TGCCAGGTCAGTAGCGCTACCGGAGAGATGCCCTCGGTGGTCTCACCATT
CCCATCCCTCAATGTGGCTCTTTTCACGCTCCCCCATGGCTTTTCCCTGC
TCAGACAACTCCTGGGTATGAAAGGGGCTGCCCAAACGGATGACTTGCTG
AAGATTCGGGTACAGCTGATGAAGCCGGTGACTTGGATCCCACTCATTTG
GGGTGTGGTACGTACGGCAGGGAGAGAGGGAGGAAGGGAGGAGGGGAGGG
ACGGGATAAGGATGCGACGAAGACCAGAATTGTACAGGGAATGGACGGTG
CGCGCAATATGGCCTGTCCCCATCTTTAAAAAATCGGGGGGAAGGAGAAC
ACGTTTCTGGTGTCTATCGGGCTCAACCCAGATTCCTTCTTCCCTTCCCC
TCTCCCTCCCTCCATGCCTCATTCCCCTAACAGGTCTGCGGTGCTGCGGC
GAGCGGGAATTACCACTGGGCCAATCCGTTCGACCAGGGTAGCCCCGACG
CGGTACCCCTATCTCTGGGTTTGGAGGATGCGGCAAAGGCGGTCACCTGC
ATGGTACCTACCTCCCTGCCTCACTCCTTCCCTCCCTCTATTCTTCCTTC
CTTCCTTCCCTCCCTCCATCCCTCCTTTTTTCTTTCGATTTCCTTGCTTT
GTCGAGTTTTACCGCTCTATTTTCCTCCTGCTGAGTCGTGCTGTAAATTT
TTTTAAAGACTCCATTTTTCCGGTTCCTCCTTCCCTCCCTCCCCCCCGCC
CTCCCTCCAGCCCTCCCTTCCTTGTCAAATCTTTCCCCCCGCATGGATCG
AAACTACCAACTGTACATATCGAGAGTGACCTCTATCCCTCCCTCCCTGC
CTTCCCTTCCTTCCTCAGGTCCTCGCCGGGCCCCTCCTCACTGGCTTCAC
GCAGACGATCAACGATTGGTACGACAAGGACATCGACGCCATCAACGAGC
CCTACCGCCCCATTCCCTCCGGCCGCATTTCTGAGGTGGGGAGGGAGGGA
GGGA
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Coding sequence (CDS) from alignment at CM002460.1:89536..90989-

>rna2857 ID=rna2857|Name=rna2857|organism=Nannochloropsis gaditana|type=CDS|length=2945bp|location=Sequence derived from alignment at CM002460.1:89536..90989- (Nannochloropsis gaditana)
GTCCTCGCCGGGCCCCTCCTCACTGGCTTCACGCAGACGATCAACGATTG
GTACGACAAGGACATCGACGCCATCAACGAGCCCTACCGCCCCATTCCCT
CCGGCCGCATTTCTGAGGTGGGGAGGGAGGGAGGGAGTCTGCGGTGCTGC
GGCGAGCGGGAATTACCACTGGGCCAATCCGTTCGACCAGGGTAGCCCCG
ACGCGGTACCCCTATCTCTGGGTTTGGAGGATGCGGCAAAGGCGGTCACC
TGCATGACAACTCCTGGGTATGAAAGGGGCTGCCCAAACGGATGACTTGC
TGAAGATTCGGGTACAGCTGATGAAGCCGGTGACTTGGATCCCACTCATT
TGGGGTGTGTACCATACCACTAGCCGTGCTGCTTCGCCTTTGCGCATGGT
CCTCCCATCTGCCAAGGAGGGAAAAGGAAAAGTGGCATCCTTCTACCCCT
TTGAAACGTCTTTGGGCGTTAAAGGAAAGAAGGACAACAGTGAAGTCGGA
ACCGACGCTGCCAGATGCGGCATATTCTGTCCTTGTTTTTGGCACCGACG
CTTATGGTGACGGGCTTTCTGTTGCCTCGTCTGCCTCAGGTCCTCGCCGG
GCCCCTCCTCACTGGCTTCACGCAGACGATCAACGATTGGTACGACAAGG
ACATCGACGCCATCAACGAGCCCTACCGCCCCATTCCCTCCGGCCGCATT
TCTGAGGTGGGGAGGGAGGGAGGGAGTCTGCGGTGCTGCGGCGAGCGGGA
ATTACCACTGGGCCAATCCGTTCGACCAGGGTAGCCCCGACGCGGTACCC
CTATCTCTGGGTTTGGAGGATGCGGCAAAGGCGGTCACCTGCATGACAAC
TCCTGGGTATGAAAGGGGCTGCCCAAACGGATGACTTGCTGAAGATTCGG
GTACAGCTGATGAAGCCGGTGACTTGGATCCCACTCATTTGGGGTGTGTA
CCATACCACTAGCCGTGCTGCTTCGCCTTTGCGCATGGTCCTCCCATCTG
CCAAGGAGGGAAAAGGAAAAGTGGCATCCTTCTACCCCTTTGAAACGTCT
TTGGGCGTTAAAGGAAAGAAGGACAACAGTGAAGTCGGAACCGACGCTGC
CAGATGCGGCATATTCTGTCCTTGTTTTTGGCACCGACGCTTATGGTGAC
GGGCTTTCTGTTGCCTCGTCTGCCTCAGGTCCTCGCCGGGCCCCTCCTCA
CTGGCTTCACGCAGACGATCAACGATTGGTACGACAAGGACATCGACGCC
ATCAACGAGCCCTACCGCCCCATTCCCTCCGGCCGCATTTCTGAGGTGGG
GAGGGAGGGAGGGAGTCTGCGGTGCTGCGGCGAGCGGGAATTACCACTGG
GCCAATCCGTTCGACCAGGGTAGCCCCGACGCGGTACCCCTATCTCTGGG
TTTGGAGGATGCGGCAAAGGCGGTCACCTGCATGACAACTCCTGGGTATG
AAAGGGGCTGCCCAAACGGATGACTTGCTGAAGATTCGGGTACAGCTGAT
GAAGCCGGTGACTTGGATCCCACTCATTTGGGGTGTGTACCATACCACTA
GCCGTGCTGCTTCGCCTTTGCGCATGGTCCTCCCATCTGCCAAGGAGGGA
AAAGGAAAAGTGGCATCCTTCTACCCCTTTGAAACGTCTTTGGGCGTTAA
AGGAAAGAAGGACAACAGTGAAGTCGGAACCGACGCTGCCAGATGCGGCA
TATTCTGTCCTTGTTTTTGGCACCGACGCTTATGGTGACGGGCTTTCTGT
TGCCTCGTCTGCCTCAGGTCCTCGCCGGGCCCCTCCTCACTGGCTTCACG
CAGACGATCAACGATTGGTACGACAAGGACATCGACGCCATCAACGAGCC
CTACCGCCCCATTCCCTCCGGCCGCATTTCTGAGGTGGGGAGGGAGGGAG
GGAGTCTGCGGTGCTGCGGCGAGCGGGAATTACCACTGGGCCAATCCGTT
CGACCAGGGTAGCCCCGACGCGGTACCCCTATCTCTGGGTTTGGAGGATG
CGGCAAAGGCGGTCACCTGCATGACAACTCCTGGGTATGAAAGGGGCTGC
CCAAACGGATGACTTGCTGAAGATTCGGGTACAGCTGATGAAGCCGGTGA
CTTGGATCCCACTCATTTGGGGTGTGTACCATACCACTAGCCGTGCTGCT
TCGCCTTTGCGCATGGTCCTCCCATCTGCCAAGGAGGGAAAAGGAAAAGT
GGCATCCTTCTACCCCTTTGAAACGTCTTTGGGCGTTAAAGGAAAGAAGG
ACAACAGTGAAGTCGGAACCGACGCTGCCAGATGCGGCATATTCTGTCCT
TGTTTTTGGCACCGACGCTTATGGTGACGGGCTTTCTGTTGCCTCGTCTG
CCTCAGGTCCTCGCCGGGCCCCTCCTCACTGGCTTCACGCAGACGATCAA
CGATTGGTACGACAAGGACATCGACGCCATCAACGAGCCCTACCGCCCCA
TTCCCTCCGGCCGCATTTCTGAGGTGGGGAGGGAGGGAGGGAGTCTGCGG
TGCTGCGGCGAGCGGGAATTACCACTGGGCCAATCCGTTCGACCAGGGTA
GCCCCGACGCGGTACCCCTATCTCTGGGTTTGGAGGATGCGGCAAAGGCG
GTCACCTGCATGACAACTCCTGGGTATGAAAGGGGCTGCCCAAACGGATG
ACTTGCTGAAGATTCGGGTACAGCTGATGAAGCCGGTGACTTGGATCCCA
CTCATTTGGGGTGTGTACCATACCACTAGCCGTGCTGCTTCGCCTTTGCG
CATGGTCCTCCCATCTGCCAAGGAGGGAAAAGGAAAAGTGGCATCCTTCT
ACCCCTTTGAAACGTCTTTGGGCGTTAAAGGAAAGAAGGACAACAGTGAA
GTCGGAACCGACGCTGCCAGATGCGGCATATTCTGTCCTTGTTTTTGGCA
CCGACGCTTATGGTGACGGGCTTTCTGTTGCCTCGTCTGCCTCAG
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Synonyms
Publications