EWM27823.1, cds2849 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|585110143|gb|EWM27823.1| (chlorophyll synthetase, partial [Nannochloropsis gaditana]) HSP 1 Score: 403.675 bits (1036), Expect = 1.906e-142 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query: 1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG 196
MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG
Sbjct: 1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG 196
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1210524065|dbj|GAX16794.1| (chlorophyll/bacteriochlorophyll a synthase [Fistulifera solaris]) HSP 1 Score: 189.119 bits (479), Expect = 3.838e-56 Identity = 101/191 (52.88%), Postives = 127/191 (66.49%), Query Frame = 0
Query: 1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
MR +L L T +GF +P Q TS+ + L ++ A++ ASFYPFE S + S RQLLG++GA++ D+ KIR+QL KPVTW+PL+WGV+CGAAASGNYHW NPFD P+ ++LG EDA K M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct: 1 MRFVLVASLLAT--ASGFTVPSWTQ---TSQQKTGLSLLPKQAEQ-----ASFYPFEDSKSALQQAKGSTEKDGKVRQLLGLRGASEETDIWKIRLQLTKPVTWVPLVWGVMCGAAASGNYHWMWNPFD---PNDRDIALGAEDALKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 178
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|397575767|gb|EJK49881.1| (hypothetical protein THAOC_31201 [Thalassiosira oceanica]) HSP 1 Score: 191.045 bits (484), Expect = 9.284e-56 Identity = 105/182 (57.69%), Postives = 123/182 (67.58%), Query Frame = 0
Query: 24 PQYHTTSRAASPLRMVLPSAKEGKGKV----ASFYPFETS--------LGVKGKKDNSEV--GTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
P TTS AS ++ +P A E V AS+YPF S L + K N EV G+ RQLLG+KGA++T D+ KIR+QL KPVTWIPL+WGV+CGAAASGNYHW NPFD D + LGLED AK M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct: 24 PSSRTTSTDAS--QLAVPPADEKYIPVDSTRASYYPFGASTSSDRLISLSARPPKSNEEVTDGSANVRQLLGLKGASETTDIWKIRLQLTKPVTWIPLVWGVMCGAAASGNYHWIWNPFDPNDRDVM---LGLEDTAKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 200
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1210527295|dbj|GAX13930.1| (chlorophyll/bacteriochlorophyll a synthase [Fistulifera solaris]) HSP 1 Score: 187.578 bits (475), Expect = 1.944e-55 Identity = 102/191 (53.40%), Postives = 126/191 (65.97%), Query Frame = 0
Query: 1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
MR IL LA L+ +P + TS+ + L + LP+ E ASFYPFE S + S RQLLG++GA++ D+ KIR+QL KPVTW+PL+WGV+CGAAASGNYHW NPFD P+ ++LG EDA K M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct: 1 MRFIL---LASFLVTASSF--TVPSWTLTSQQKTGLSL-LPTQAEQ----ASFYPFEDSKSALQQAKGSTEKDGKVRQLLGLRGASEETDIWKIRLQLTKPVTWVPLVWGVMCGAAASGNYHWMWNPFD---PNDRDIALGAEDALKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 178
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|298714003|emb|CBJ27235.1| (Chlorophyll synthase, putative chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 188.348 bits (477), Expect = 1.099e-54 Identity = 102/193 (52.85%), Postives = 121/193 (62.69%), Query Frame = 0
Query: 18 FLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETS--------------LGV------KGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
F +P LP ++RA + + K SFYPF+ S GV KG E A RQL+G+KGA+ TD++LKIR+QL KPVTWIPLIWGV+CGAAASGNYHW NPF G V LG +D KA+ CM+L+GP LTG+TQTINDWYD+DIDAINEPYRPIPSG ISE
Sbjct: 21 FHVPALP----SARATAAANRHVSRMSTADDKPKSFYPFQRSDAPSTRPGSIPRLEAGVTPTPETKGGTKEGEGAGGAFRQLVGLKGASTTDEILKIRLQLTKPVTWIPLIWGVLCGAAASGNYHWWNPFGGGD---VSFDLGSQDLLKALGCMILSGPFLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 206
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|223999603|ref|XP_002289474.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974682|gb|EED93011.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 186.808 bits (473), Expect = 2.166e-54 Identity = 96/151 (63.58%), Postives = 111/151 (73.51%), Query Frame = 0
Query: 47 KGKVASFYPFE----TSLGVKGKKDNSEV--GTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
K + SFYPF+ + L K N EV G+ RQLLG+KGA+ T D+ KIR+QL KPVTWIPL+WGV+CGAAASGNYHW NPFD P+ + LGLED AK M+LAGP LTG+TQTINDWYD+DIDAINEPYRPIPSG ISE
Sbjct: 38 KQQTDSFYPFDKESSSKLSAVPPKSNEEVSDGSADVRQLLGVKGASGTTDIWKIRLQLTKPVTWIPLVWGVMCGAAASGNYHWIWNPFD---PNDRNVMLGLEDMAKGFVAMILAGPFLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 185
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|873232162|emb|CEM06441.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 184.496 bits (467), Expect = 2.564e-53 Identity = 88/131 (67.18%), Postives = 105/131 (80.15%), Query Frame = 0
Query: 60 LGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
+ +K KD + + RQLLG++GAA+T D+ KIR+QLMKPVTWIPLIWGV+CGAAASGNYH NP + P+AV LS ED K++ CMVLAGPLLTGFTQT+NDWYD++IDAINEPYRPIPSG ISE
Sbjct: 67 VAMKEAKDEVKSNDKSVRQLLGVRGAAETTDIWKIRLQLMKPVTWIPLIWGVICGAAASGNYHTWNPLN---PEAVSLSEAGEDLLKSLACMVLAGPLLTGFTQTMNDWYDREIDAINEPYRPIPSGAISE 194
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|219119256|ref|XP_002180392.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407865|gb|EEC47800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 181.415 bits (459), Expect = 5.379e-52 Identity = 106/219 (48.40%), Postives = 133/219 (60.73%), Query Frame = 0
Query: 1 MRHILSL-FLAPTLMVTGFLLPRLPQYHTTSRAA---SPLRMVLPSAKEGKG---------KVASFYPFE----------TSLGVK-----GKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
MR + ++ FL+ GF + T+RA+ +P +LPS K K +SFYPF+ T+ GV G +E G+ RQLLG+KGA+ ++ KIR+QL KPVTWIPL+WGV+CGAAASGNYHW NP D P+ + LGLEDA K M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct: 1 MRFLFTIAFLSSVTTTRGFTV-------GTTRASVVKAPGLAMLPSNKNANHARHKSLRPPKTSSFYPFDESSTTSTKRPTTSGVSLQAKPGPNAEAEDGSAGVRQLLGLKGASAESNIWKIRLQLTKPVTWIPLVWGVMCGAAASGNYHWIWNPLD---PNDRNVMLGLEDALKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 209
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1072237816|gb|OEU22543.1| (chlorophyll synthase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 178.333 bits (451), Expect = 6.646e-51 Identity = 88/134 (65.67%), Postives = 104/134 (77.61%), Query Frame = 0
Query: 60 LGVKGKKDNSEV--GTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
L K K N EV G+ RQLLG++GAAQ ++ KIR+QL KP+TW+PL+WGV+CGAAASGNYHW NP+D D + LGLED AKA+T M+LAGP LTG+TQTINDWYD+DIDAINEP RPIPSG ISE
Sbjct: 63 LEAKEGKGNEEVEDGSAGFRQLLGVRGAAQETNIWKIRLQLTKPITWVPLLWGVMCGAAASGNYHWIWNPWDPNDRDVM---LGLEDTAKAITAMILAGPFLTGYTQTINDWYDRDIDAINEPNRPIPSGAISE 193
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1189391884|gb|OSX78807.1| (hypothetical protein BU14_0098s0032 [Porphyra umbilicalis]) HSP 1 Score: 172.17 bits (435), Expect = 1.619e-48 Identity = 78/127 (61.42%), Postives = 96/127 (75.59%), Query Frame = 0
Query: 64 GKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
G D + +ARQLLGMKGA+ ++ KIR+QL+KPVTW+PLIWGV CGAAASGN+HW++P ED AKAV M+L+GPL+TGFTQT+NDWYD+D+DAINEPYRPIPSGRI+E
Sbjct: 93 GNTDAEDASGSSARQLLGMKGASAETNIWKIRLQLLKPVTWVPLIWGVACGAAASGNFHWSDP---------------EDIAKAVVTMILSGPLMTGFTQTVNDWYDRDLDAINEPYRPIPSGRITE 204 The following BLAST results are available for this feature:
BLAST of EWM27823.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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