EWM27823.1, cds2849 (CDS) Nannochloropsis gaditana

Overview
NameEWM27823.1
Unique Namecds2849
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:90883..90957 -
Alignment locationCM002460.1:90534..90688 -
Alignment locationCM002460.1:90333..90435 -
Alignment locationCM002460.1:89987..90106 -
Alignment locationCM002460.1:89536..89671 -

Link to JBrowse

Properties
Property NameValue
Start range89536
Start range.
Protein idEWM27823.1
Productchlorophyll synthetase
Partialtrue
Orig transcript idgnl|cribi|Naga_100989g1.4776.mrna
GeneCHS
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:90883..90957 -
CM002460.1supercontigCM002460.1:90534..90688 -
CM002460.1supercontigCM002460.1:90333..90435 -
CM002460.1supercontigCM002460.1:89987..90106 -
CM002460.1supercontigCM002460.1:89536..89671 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004659prenyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000537UbiA_prenyltransferase
Homology
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|585110143|gb|EWM27823.1| (chlorophyll synthetase, partial [Nannochloropsis gaditana])

HSP 1 Score: 403.675 bits (1036), Expect = 1.906e-142
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG 196
            MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG
Sbjct:    1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISEVGREGG 196          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1210524065|dbj|GAX16794.1| (chlorophyll/bacteriochlorophyll a synthase [Fistulifera solaris])

HSP 1 Score: 189.119 bits (479), Expect = 3.838e-56
Identity = 101/191 (52.88%), Postives = 127/191 (66.49%), Query Frame = 0
Query:    1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            MR +L   L  T   +GF +P   Q   TS+  + L ++   A++     ASFYPFE S     +   S       RQLLG++GA++  D+ KIR+QL KPVTW+PL+WGV+CGAAASGNYHW  NPFD   P+   ++LG EDA K    M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct:    1 MRFVLVASLLAT--ASGFTVPSWTQ---TSQQKTGLSLLPKQAEQ-----ASFYPFEDSKSALQQAKGSTEKDGKVRQLLGLRGASEETDIWKIRLQLTKPVTWVPLVWGVMCGAAASGNYHWMWNPFD---PNDRDIALGAEDALKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 178          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|397575767|gb|EJK49881.1| (hypothetical protein THAOC_31201 [Thalassiosira oceanica])

HSP 1 Score: 191.045 bits (484), Expect = 9.284e-56
Identity = 105/182 (57.69%), Postives = 123/182 (67.58%), Query Frame = 0
Query:   24 PQYHTTSRAASPLRMVLPSAKEGKGKV----ASFYPFETS--------LGVKGKKDNSEV--GTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            P   TTS  AS  ++ +P A E    V    AS+YPF  S        L  +  K N EV  G+   RQLLG+KGA++T D+ KIR+QL KPVTWIPL+WGV+CGAAASGNYHW  NPFD    D +   LGLED AK    M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct:   24 PSSRTTSTDAS--QLAVPPADEKYIPVDSTRASYYPFGASTSSDRLISLSARPPKSNEEVTDGSANVRQLLGLKGASETTDIWKIRLQLTKPVTWIPLVWGVMCGAAASGNYHWIWNPFDPNDRDVM---LGLEDTAKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 200          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1210527295|dbj|GAX13930.1| (chlorophyll/bacteriochlorophyll a synthase [Fistulifera solaris])

HSP 1 Score: 187.578 bits (475), Expect = 1.944e-55
Identity = 102/191 (53.40%), Postives = 126/191 (65.97%), Query Frame = 0
Query:    1 MRHILSLFLAPTLMVTGFLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETSLGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            MR IL   LA  L+        +P +  TS+  + L + LP+  E     ASFYPFE S     +   S       RQLLG++GA++  D+ KIR+QL KPVTW+PL+WGV+CGAAASGNYHW  NPFD   P+   ++LG EDA K    M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct:    1 MRFIL---LASFLVTASSF--TVPSWTLTSQQKTGLSL-LPTQAEQ----ASFYPFEDSKSALQQAKGSTEKDGKVRQLLGLRGASEETDIWKIRLQLTKPVTWVPLVWGVMCGAAASGNYHWMWNPFD---PNDRDIALGAEDALKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 178          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|298714003|emb|CBJ27235.1| (Chlorophyll synthase, putative chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 188.348 bits (477), Expect = 1.099e-54
Identity = 102/193 (52.85%), Postives = 121/193 (62.69%), Query Frame = 0
Query:   18 FLLPRLPQYHTTSRAASPLRMVLPSAKEGKGKVASFYPFETS--------------LGV------KGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            F +P LP    ++RA +     +        K  SFYPF+ S               GV      KG     E    A RQL+G+KGA+ TD++LKIR+QL KPVTWIPLIWGV+CGAAASGNYHW NPF  G    V   LG +D  KA+ CM+L+GP LTG+TQTINDWYD+DIDAINEPYRPIPSG ISE
Sbjct:   21 FHVPALP----SARATAAANRHVSRMSTADDKPKSFYPFQRSDAPSTRPGSIPRLEAGVTPTPETKGGTKEGEGAGGAFRQLVGLKGASTTDEILKIRLQLTKPVTWIPLIWGVLCGAAASGNYHWWNPFGGGD---VSFDLGSQDLLKALGCMILSGPFLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 206          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|223999603|ref|XP_002289474.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974682|gb|EED93011.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 186.808 bits (473), Expect = 2.166e-54
Identity = 96/151 (63.58%), Postives = 111/151 (73.51%), Query Frame = 0
Query:   47 KGKVASFYPFE----TSLGVKGKKDNSEV--GTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            K +  SFYPF+    + L     K N EV  G+   RQLLG+KGA+ T D+ KIR+QL KPVTWIPL+WGV+CGAAASGNYHW  NPFD   P+   + LGLED AK    M+LAGP LTG+TQTINDWYD+DIDAINEPYRPIPSG ISE
Sbjct:   38 KQQTDSFYPFDKESSSKLSAVPPKSNEEVSDGSADVRQLLGVKGASGTTDIWKIRLQLTKPVTWIPLVWGVMCGAAASGNYHWIWNPFD---PNDRNVMLGLEDMAKGFVAMILAGPFLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 185          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|873232162|emb|CEM06441.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 184.496 bits (467), Expect = 2.564e-53
Identity = 88/131 (67.18%), Postives = 105/131 (80.15%), Query Frame = 0
Query:   60 LGVKGKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            + +K  KD  +    + RQLLG++GAA+T D+ KIR+QLMKPVTWIPLIWGV+CGAAASGNYH  NP +   P+AV LS   ED  K++ CMVLAGPLLTGFTQT+NDWYD++IDAINEPYRPIPSG ISE
Sbjct:   67 VAMKEAKDEVKSNDKSVRQLLGVRGAAETTDIWKIRLQLMKPVTWIPLIWGVICGAAASGNYHTWNPLN---PEAVSLSEAGEDLLKSLACMVLAGPLLTGFTQTMNDWYDREIDAINEPYRPIPSGAISE 194          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|219119256|ref|XP_002180392.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407865|gb|EEC47800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 181.415 bits (459), Expect = 5.379e-52
Identity = 106/219 (48.40%), Postives = 133/219 (60.73%), Query Frame = 0
Query:    1 MRHILSL-FLAPTLMVTGFLLPRLPQYHTTSRAA---SPLRMVLPSAKEGKG---------KVASFYPFE----------TSLGVK-----GKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            MR + ++ FL+      GF +        T+RA+   +P   +LPS K             K +SFYPF+          T+ GV      G    +E G+   RQLLG+KGA+   ++ KIR+QL KPVTWIPL+WGV+CGAAASGNYHW  NP D   P+   + LGLEDA K    M+LAGP LTG+TQTINDWYD++IDAINEPYRPIPSG ISE
Sbjct:    1 MRFLFTIAFLSSVTTTRGFTV-------GTTRASVVKAPGLAMLPSNKNANHARHKSLRPPKTSSFYPFDESSTTSTKRPTTSGVSLQAKPGPNAEAEDGSAGVRQLLGLKGASAESNIWKIRLQLTKPVTWIPLVWGVMCGAAASGNYHWIWNPLD---PNDRNVMLGLEDALKGFVAMILAGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 209          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1072237816|gb|OEU22543.1| (chlorophyll synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 178.333 bits (451), Expect = 6.646e-51
Identity = 88/134 (65.67%), Postives = 104/134 (77.61%), Query Frame = 0
Query:   60 LGVKGKKDNSEV--GTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWA-NPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            L  K  K N EV  G+   RQLLG++GAAQ  ++ KIR+QL KP+TW+PL+WGV+CGAAASGNYHW  NP+D    D +   LGLED AKA+T M+LAGP LTG+TQTINDWYD+DIDAINEP RPIPSG ISE
Sbjct:   63 LEAKEGKGNEEVEDGSAGFRQLLGVRGAAQETNIWKIRLQLTKPITWVPLLWGVMCGAAASGNYHWIWNPWDPNDRDVM---LGLEDTAKAITAMILAGPFLTGYTQTINDWYDRDIDAINEPNRPIPSGAISE 193          
BLAST of EWM27823.1 vs. NCBI_GenBank
Match: gi|1189391884|gb|OSX78807.1| (hypothetical protein BU14_0098s0032 [Porphyra umbilicalis])

HSP 1 Score: 172.17 bits (435), Expect = 1.619e-48
Identity = 78/127 (61.42%), Postives = 96/127 (75.59%), Query Frame = 0
Query:   64 GKKDNSEVGTDAARQLLGMKGAAQTDDLLKIRVQLMKPVTWIPLIWGVVCGAAASGNYHWANPFDQGSPDAVPLSLGLEDAAKAVTCMVLAGPLLTGFTQTINDWYDKDIDAINEPYRPIPSGRISE 190
            G  D  +    +ARQLLGMKGA+   ++ KIR+QL+KPVTW+PLIWGV CGAAASGN+HW++P               ED AKAV  M+L+GPL+TGFTQT+NDWYD+D+DAINEPYRPIPSGRI+E
Sbjct:   93 GNTDAEDASGSSARQLLGMKGASAETNIWKIRLQLLKPVTWVPLIWGVACGAAASGNFHWSDP---------------EDIAKAVVTMILSGPLMTGFTQTVNDWYDRDLDAINEPYRPIPSGRITE 204          
The following BLAST results are available for this feature:
BLAST of EWM27823.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110143|gb|EWM27823.1|1.906e-142100.00chlorophyll synthetase, partial [Nannochloropsis g... [more]
gi|1210524065|dbj|GAX16794.1|3.838e-5652.88chlorophyll/bacteriochlorophyll a synthase [Fistul... [more]
gi|397575767|gb|EJK49881.1|9.284e-5657.69hypothetical protein THAOC_31201 [Thalassiosira oc... [more]
gi|1210527295|dbj|GAX13930.1|1.944e-5553.40chlorophyll/bacteriochlorophyll a synthase [Fistul... [more]
gi|298714003|emb|CBJ27235.1|1.099e-5452.85Chlorophyll synthase, putative chloroplast precurs... [more]
gi|223999603|ref|XP_002289474.1|2.166e-5463.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|873232162|emb|CEM06441.1|2.564e-5367.18unnamed protein product [Vitrella brassicaformis C... [more]
gi|219119256|ref|XP_002180392.1|5.379e-5248.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072237816|gb|OEU22543.1|6.646e-5165.67chlorophyll synthase [Fragilariopsis cylindrus CCM... [more]
gi|1189391884|gb|OSX78807.1|1.619e-4861.42hypothetical protein BU14_0098s0032 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2857rna2857Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications