rna2856, rna2856 (mRNA) Nannochloropsis gaditana

Overview
Namerna2856
Unique Namerna2856
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1200
Alignment locationCM002460.1:87535..88696 -

Link to JBrowse

Properties
Property NameValue
Productchlorophyll synthase
Orig transcript idgnl|cribi|Naga_101224g2.7816.mrna
Orig protein idgnl|cribi|Naga_101224g2.7816
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:87535..88696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101224g2gene2732Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2856rna2856-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27825.1cds2848Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2856 ID=rna2856|Name=rna2856|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp
ATGACCTTGGACGAAGCAGACCAACTCCTCGACGCGAAGAACAAGATCGA
CTGCGAACGAATCCGCGGCTTGATTGAAGGAACGGCGCCCGGACGCGCCA
AGTCAGGGACTCCCATCTGTCGGTACGCCTTGTTTTCTGCCACCTATTCG
GACACCATCATGGCCAATGTGCGCGACTTTGTCCCGCGAACCAGCAAACG
TGCTCTAATCCAACTTGACAAGAATGAGGTCATGGTGGAGGAAATCGCCC
AGCTCTATGTCGATCTGAGGGAGCAAGGGTATGACGCGCCACGTTTTGAA
CAGCAGCGACGCAAGGAGGATTTTATCGTTGCCCTTTTGAAGGAAAGGAC
TATTACCGGCAAGGTCGTCATATTTGTTCAATCCAAACGCTCTTGCGCCG
CGCTGGCCGATCGGTTGCGCCAGCTCCGCCACCTGGAGGCCTCTGAGTTT
CACGGAGGGCTCACTCCAGAGGAGCGCGACATATTTTTCGCGGATTTTAT
CCAGGGCCGACGGAACGTGCTGGTCGCCACCGATGTCCTCTCCAGGGGGA
TCGACGTGGAAGGAATTGCCTGGGTGATAAATTTTGACATGCCTTTCCAA
CCGCGTGTGGCGCGGAGCGACGAGGAAGGCAACGTGACCGACACGGGGGC
ACCGGAAACGTACATCCATCGAGTCGGCCGTACGGGTCGTTTTGGCGCCG
AAGGGATCGCGGTCTCTCTGGTCGCGAACAATCAGGAATGGAATCTCCTG
CGCGCCATTGAACGAGACTACGCTCTGGGCATCAAGGCACAGGCTGGTCA
GGAAGCCGCCGTCCTCATTCATCAAGTCCCAGCCGACTCCATTCCCGAGG
TCGAGAAGGTCGCAAAGCAGGTGGCGGACGCAGTGAAAACCCGCAGGGCA
GAGCGATTGGCCGCAGAGGCCGCGGAAGAAAAAGAGCAGGAGAAGAAGGA
AGCAGAAAAAGAGGCGGCAACGGCCGCAACTGCGGCGGCCGCTTCAGGAG
GTCCTGTAACGGCGGGAGAAGGATCAGAAAATGCAGGGAAGGGGAAGATA
AGGGCGAAAAAGGAAGCGAAACCACGGAGAAAGGAACCTGAGATTGAAGA
AAAGGGGGTCGGGAAACTGAGAGGAAGGGAATTTAATGTGATCGGGATGG
AGACAATGTTTCAGTTGTTGCGGTGCAGTGGCTTCTCGATGAAAAGCTAG
back to top

protein sequence of rna2856

>rna2856-protein ID=rna2856-protein|Name=rna2856|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MVVSGDLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTID
VTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQA
SAQPFLVLGILTTALAVDKRRGDRKPIYDTGRAPREAIVSLMTRRA
back to top

mRNA from alignment at CM002460.1:87535..88696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2856 ID=rna2856|Name=rna2856|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at CM002460.1:87535..88696- (Nannochloropsis gaditana)
ATGGTAGTTTCTGGTGAGTGGTCGATCGCCAGCCGTGACCCCTCCCTCCC
TCCCTCCCTCGCTCCCTCCCTCCCACCACCCACCACGCCAGCCTGGCCGG
GCTTGGCATCGCCATCGTCAACGATTTTAAATCCATCGAGGGAGACCGGG
CCATGGGCCTGCAGTCCCTCCCCGTCGCGTTCGGAATCGACGCCGCCAAG
TGGATCTGCGTGGGAACCATCGACGTGACCCAGGTAAGCCGTTTCCGCGC
GTCGGTGTTTTTCGGGATTTCGTCGGGATTTCGCCGAGGAGAATGTGGCT
GTATATCCGGACTGGGAGATGGGGGAGTTTTGTAAAGGGGGAAAGTTGGG
GGAAGGGGATGGATGGGATGAAGGGAGGTGTAGGAGGCAAAGATGAGGAG
AGCGATGCCAGTCACCTAGCATGCTTTCTATTGCCCCGTGACATTCTTTG
AAATTGTGCGCTCTCCTACTTTTCCTCCTTGCAACCTTTTTCTTCTCAAA
CTTCTCGTGTGATTAATTGAGAGTGGGACGGGCCAGTCTTCTCTACTTGA
CGATCTAGCCTCCCCCTCACGTCTATCTTGTTATCCCGCTCTTGTGCCCC
TCCCTTTCCGTTCCCCGTGTACCAGCTCGGTGTCGCTGGCTATCTAGCGT
ATATCGGAGAGACAGCGTACGCCCTCGCACTCCTGGGGCTGATATTGCCG
CAAATCTTCTTTCAATTCAAATACTTCTTGAAGGACCCCATAGAGTACGA
CGTCAAATACCAGGTAGGACGTATGGGAGGAAAGGAGGAGGAACTTTTTT
GTGGTACAAAGTGTTTTCTTCTTTCTTGCAGTGTCGTAGCAGGAAAATCT
TCTTCGGGAATGCTCTCTCCCGGTGTGCTACGCATCATCATAATAGCCTA
CGTCCCCTTACATGCCCATGTTTCCCTTCTTTATCAACATGCACGGTTTC
GCCCTGGCAGGCGAGTGCGCAGCCTTTCCTTGTGCTGGGCATCTTGACGA
CGGCATTGGCTGTGGGTCACCATGACTTCGCTTCCATTTAATTGTGAAGG
GTTTAAACGGGGTTGTGCCCGAGACAAACGTCGCGGGGATCGAAAGCCTA
TTTATGACACCGGCCGGGCTCCCAGAGAAGCTATTGTTTCACTTATGACT
CGTCGGGCATAA
back to top

Coding sequence (CDS) from alignment at CM002460.1:87535..88696-

>rna2856 ID=rna2856|Name=rna2856|organism=Nannochloropsis gaditana|type=CDS|length=2205bp|location=Sequence derived from alignment at CM002460.1:87535..88696- (Nannochloropsis gaditana)
ACAAACGTCGCGGGGATCGAAAGCCTATTTATGACACCGGCCGGGCTCCC
AGAGAAGCTATTGTTTCACTTATGACTCGTCGGGCATAAGCGAGTGCGCA
GCCTTTCCTTGTGCTGGGCATCTTGACGACGGCATTGGCTGTGGCTCGGT
GTCGCTGGCTATCTAGCGTATATCGGAGAGACAGCGTACGCCCTCGCACT
CCTGGGGCTGATATTGCCGCAAATCTTCTTTCAATTCAAATACTTCTTGA
AGGACCCCATAGAGTACGACGTCAAATACCAGCCTGGCCGGGCTTGGCAT
CGCCATCGTCAACGATTTTAAATCCATCGAGGGAGACCGGGCCATGGGCC
TGCAGTCCCTCCCCGTCGCGTTCGGAATCGACGCCGCCAAGTGGATCTGC
GTGGGAACCATCGACGTGACCCAGATGGTAGTTTCTGGTGAACAAACGTC
GCGGGGATCGAAAGCCTATTTATGACACCGGCCGGGCTCCCAGAGAAGCT
ATTGTTTCACTTATGACTCGTCGGGCATAAGCGAGTGCGCAGCCTTTCCT
TGTGCTGGGCATCTTGACGACGGCATTGGCTGTGGCTCGGTGTCGCTGGC
TATCTAGCGTATATCGGAGAGACAGCGTACGCCCTCGCACTCCTGGGGCT
GATATTGCCGCAAATCTTCTTTCAATTCAAATACTTCTTGAAGGACCCCA
TAGAGTACGACGTCAAATACCAGCCTGGCCGGGCTTGGCATCGCCATCGT
CAACGATTTTAAATCCATCGAGGGAGACCGGGCCATGGGCCTGCAGTCCC
TCCCCGTCGCGTTCGGAATCGACGCCGCCAAGTGGATCTGCGTGGGAACC
ATCGACGTGACCCAGATGGTAGTTTCTGGTGAACAAACGTCGCGGGGATC
GAAAGCCTATTTATGACACCGGCCGGGCTCCCAGAGAAGCTATTGTTTCA
CTTATGACTCGTCGGGCATAAGCGAGTGCGCAGCCTTTCCTTGTGCTGGG
CATCTTGACGACGGCATTGGCTGTGGCTCGGTGTCGCTGGCTATCTAGCG
TATATCGGAGAGACAGCGTACGCCCTCGCACTCCTGGGGCTGATATTGCC
GCAAATCTTCTTTCAATTCAAATACTTCTTGAAGGACCCCATAGAGTACG
ACGTCAAATACCAGCCTGGCCGGGCTTGGCATCGCCATCGTCAACGATTT
TAAATCCATCGAGGGAGACCGGGCCATGGGCCTGCAGTCCCTCCCCGTCG
CGTTCGGAATCGACGCCGCCAAGTGGATCTGCGTGGGAACCATCGACGTG
ACCCAGATGGTAGTTTCTGGTGAACAAACGTCGCGGGGATCGAAAGCCTA
TTTATGACACCGGCCGGGCTCCCAGAGAAGCTATTGTTTCACTTATGACT
CGTCGGGCATAAGCGAGTGCGCAGCCTTTCCTTGTGCTGGGCATCTTGAC
GACGGCATTGGCTGTGGCTCGGTGTCGCTGGCTATCTAGCGTATATCGGA
GAGACAGCGTACGCCCTCGCACTCCTGGGGCTGATATTGCCGCAAATCTT
CTTTCAATTCAAATACTTCTTGAAGGACCCCATAGAGTACGACGTCAAAT
ACCAGCCTGGCCGGGCTTGGCATCGCCATCGTCAACGATTTTAAATCCAT
CGAGGGAGACCGGGCCATGGGCCTGCAGTCCCTCCCCGTCGCGTTCGGAA
TCGACGCCGCCAAGTGGATCTGCGTGGGAACCATCGACGTGACCCAGATG
GTAGTTTCTGGTGAACAAACGTCGCGGGGATCGAAAGCCTATTTATGACA
CCGGCCGGGCTCCCAGAGAAGCTATTGTTTCACTTATGACTCGTCGGGCA
TAAGCGAGTGCGCAGCCTTTCCTTGTGCTGGGCATCTTGACGACGGCATT
GGCTGTGGCTCGGTGTCGCTGGCTATCTAGCGTATATCGGAGAGACAGCG
TACGCCCTCGCACTCCTGGGGCTGATATTGCCGCAAATCTTCTTTCAATT
CAAATACTTCTTGAAGGACCCCATAGAGTACGACGTCAAATACCAGCCTG
GCCGGGCTTGGCATCGCCATCGTCAACGATTTTAAATCCATCGAGGGAGA
CCGGGCCATGGGCCTGCAGTCCCTCCCCGTCGCGTTCGGAATCGACGCCG
CCAAGTGGATCTGCGTGGGAACCATCGACGTGACCCAGATGGTAGTTTCT
GGTGA
back to top
Synonyms
Publications