EWM27825.1, cds2848 (CDS) Nannochloropsis gaditana

Overview
NameEWM27825.1
Unique Namecds2848
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:88680..88696 -
Alignment locationCM002460.1:88464..88605 -
Alignment locationCM002460.1:87934..88071 -
Alignment locationCM002460.1:87682..87736 -
Alignment locationCM002460.1:87535..87623 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27825.1
Productchlorophyll synthase
Orig transcript idgnl|cribi|Naga_101224g2.7816.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:88680..88696 -
CM002460.1supercontigCM002460.1:88464..88605 -
CM002460.1supercontigCM002460.1:87934..88071 -
CM002460.1supercontigCM002460.1:87682..87736 -
CM002460.1supercontigCM002460.1:87535..87623 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016020membrane
GO:0009507chloroplast
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004659prenyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR000537UbiA_prenyltransferase
Homology
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|585110147|gb|EWM27825.1| (chlorophyll synthase [Nannochloropsis gaditana])

HSP 1 Score: 291.967 bits (746), Expect = 7.440e-100
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 MVVSGDLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDKRRGDRKPIYDTGRAPREAIVSLMTRRA 146
            MVVSGDLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDKRRGDRKPIYDTGRAPREAIVSLMTRRA
Sbjct:    1 MVVSGDLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDKRRGDRKPIYDTGRAPREAIVSLMTRRA 146          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|1150730893|ref|XP_020276245.1| (chlorophyll synthase, chloroplastic [Asparagus officinalis])

HSP 1 Score: 186.422 bits (472), Expect = 7.771e-57
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKSIEGDRA+GLQSLPVAFG + AKWICVG ID+TQL +AGYL   G+  YALALLGLILPQIFFQFKYFLKDP++YDVKYQASAQPFLVLG+L TALA   
Sbjct:  135 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWICVGAIDITQLSIAGYLLGAGKPYYALALLGLILPQIFFQFKYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH 248          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|1141981433|gb|ONK62656.1| (uncharacterized protein A4U43_C07F6500 [Asparagus officinalis])

HSP 1 Score: 187.963 bits (476), Expect = 5.339e-56
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKSIEGDRA+GLQSLPVAFG + AKWICVG ID+TQL +AGYL   G+  YALALLGLILPQIFFQFKYFLKDP++YDVKYQASAQPFLVLG+L TALA   
Sbjct:  252 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWICVGAIDITQLSIAGYLLGAGKPYYALALLGLILPQIFFQFKYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH 365          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|1109228752|ref|XP_019189084.1| (PREDICTED: chlorophyll synthase, chloroplastic-like [Ipomoea nil])

HSP 1 Score: 187.578 bits (475), Expect = 8.261e-56
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKSIEGDRAMGLQSLPVAFG + AKWICVG ID+TQL VAGYL  +G+  YALALLGL  PQIFFQFKYFLKDP++YDVKYQASAQPFLVLG+L TALA   
Sbjct:  259 SIAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSETAKWICVGAIDLTQLSVAGYLFSVGKPYYALALLGLTAPQIFFQFKYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH 372          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|1040866511|ref|XP_017243789.1| (PREDICTED: chlorophyll synthase, chloroplastic [Daucus carota subsp. sativus] >gi|1021039463|gb|KZM97244.1| hypothetical protein DCAR_015394 [Daucus carota subsp. sativus])

HSP 1 Score: 187.578 bits (475), Expect = 9.573e-56
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKS+EGDRAMGLQSLPVAFG + AKWICVG IDVTQL VAGYL   G+  YALALLGLI PQ+FFQFKYFLKDP++YDVKYQASAQPFL+LG+L TALA   
Sbjct:  261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGFETAKWICVGAIDVTQLSVAGYLLGAGKPYYALALLGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPFLILGLLVTALATSH 374          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|338173751|gb|AEI83422.1| (chlorophyll synthase [Camellia sinensis])

HSP 1 Score: 187.578 bits (475), Expect = 1.150e-55
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKS+EGDRA+GLQSLPVAFG + AKWICVG IDVTQL VAGYL   G+  YALALLGLILPQ+FFQFKYFLKDP++YDVKYQASAQPFL+LG+L TALA   
Sbjct:  261 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWICVGAIDVTQLSVAGYLLGAGKPFYALALLGLILPQVFFQFKYFLKDPVKYDVKYQASAQPFLILGLLVTALATSH 374          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|743066343|gb|AJB84630.1| (chlorophyll synthase [Camellia sinensis])

HSP 1 Score: 187.578 bits (475), Expect = 1.175e-55
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKS+EGDRA+GLQSLPVAFG + AKWICVG IDVTQL VAGYL   G+  YALALLGLILPQ+FFQFKYFLKDP++YDVKYQASAQPFL+LG+L TALA   
Sbjct:  261 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWICVGAIDVTQLSVAGYLLGAGKPFYALALLGLILPQVFFQFKYFLKDPVKYDVKYQASAQPFLILGLLVTALATSH 374          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|1025181798|ref|XP_016473005.1| (PREDICTED: chlorophyll synthase, chloroplastic-like [Nicotiana tabacum])

HSP 1 Score: 187.193 bits (474), Expect = 1.376e-55
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKSIEGDRAMGLQSLPVAFG +AAKWICVG ID+TQ+ VAGYL   G+  YALALLGLI PQ+FFQFKYFLKDP++YDVKYQASAQPFL+LG+L TALA   
Sbjct:  260 SVAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSEAAKWICVGAIDITQISVAGYLLGAGKPYYALALLGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPFLILGLLVTALATSH 373          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|697106201|ref|XP_009606938.1| (PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 187.193 bits (474), Expect = 1.376e-55
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKSIEGDRAMGLQSLPVAFG +AAKWICVG ID+TQ+ VAGYL   G+  YALALLGLI PQ+FFQFKYFLKDP++YDVKYQASAQPFL+LG+L TALA   
Sbjct:  260 SVAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSEAAKWICVGAIDITQISVAGYLLGAGKPYYALALLGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPFLILGLLVTALATSH 373          
BLAST of EWM27825.1 vs. NCBI_GenBank
Match: gi|228535376|gb|ACQ44245.1| (chlorophyll synthase [Nicotiana tabacum])

HSP 1 Score: 186.808 bits (473), Expect = 1.783e-55
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    6 DLAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGIDAAKWICVGTIDVTQLGVAGYLAYIGETAYALALLGLILPQIFFQFKYFLKDPIEYDVKYQASAQPFLVLGILTTALAVDK 119
             +AGLGIAIVNDFKSIEGDRAMGLQSLPVAFG +AAKWICVG ID+TQ+ VAGYL   G+  YALALLGLI PQ+FFQFKYFLKDP++YDVKYQASAQPFL+LG+L TALA   
Sbjct:  260 SVAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSEAAKWICVGAIDITQISVAGYLLGAGKPYYALALLGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPFLILGLLVTALATSH 373          
The following BLAST results are available for this feature:
BLAST of EWM27825.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110147|gb|EWM27825.1|7.440e-100100.00chlorophyll synthase [Nannochloropsis gaditana][more]
gi|1150730893|ref|XP_020276245.1|7.771e-5779.82chlorophyll synthase, chloroplastic [Asparagus off... [more]
gi|1141981433|gb|ONK62656.1|5.339e-5679.82uncharacterized protein A4U43_C07F6500 [Asparagus ... [more]
gi|1109228752|ref|XP_019189084.1|8.261e-5679.82PREDICTED: chlorophyll synthase, chloroplastic-lik... [more]
gi|1040866511|ref|XP_017243789.1|9.573e-5678.95PREDICTED: chlorophyll synthase, chloroplastic [Da... [more]
gi|338173751|gb|AEI83422.1|1.150e-5578.95chlorophyll synthase [Camellia sinensis][more]
gi|743066343|gb|AJB84630.1|1.175e-5578.95chlorophyll synthase [Camellia sinensis][more]
gi|1025181798|ref|XP_016473005.1|1.376e-5578.95PREDICTED: chlorophyll synthase, chloroplastic-lik... [more]
gi|697106201|ref|XP_009606938.1|1.376e-5578.95PREDICTED: chlorophyll synthase, chloroplastic [Ni... [more]
gi|228535376|gb|ACQ44245.1|1.783e-5578.95chlorophyll synthase [Nicotiana tabacum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2856rna2856Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications