rna2854, rna2854 (mRNA) Nannochloropsis gaditana

Overview
Namerna2854
Unique Namerna2854
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length216
Alignment locationCM002460.1:78888..80891 +

Link to JBrowse

Properties
Property NameValue
ProductEGF-like region, conserved site
Orig transcript idgnl|cribi|Naga_100074g17.789.mrna
Orig protein idgnl|cribi|Naga_100074g17.789
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:78888..80891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100074g17gene2730Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2854rna2854-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27831.1cds2846Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2854 ID=rna2854|Name=rna2854|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGAGGGGAAAGTATCGAAAAGCAACTGTTCAAATGCGACCAAAACATGA
CATCCCACATTATCAGCAGTATTTGAAAAAGGACGCGAGTAGAGAGAGAC
CACGTCAACGTATGAAGCTGATACCAAGGAAAACCAAACAAAAGTTCAAG
TCCCCTTTCAATCGTGTAAAAGTATTTTCCTTTCACTCCCTTACTTTCCA
AAATGGAGTAGATTAA
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protein sequence of rna2854

>rna2854-protein ID=rna2854-protein|Name=rna2854|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPG
SFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRC
AQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHD
NPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGED
RSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTAN
CQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPT
VPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS
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mRNA from alignment at CM002460.1:78888..80891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2854 ID=rna2854|Name=rna2854|organism=Nannochloropsis gaditana|type=mRNA|length=2004bp|location=Sequence derived from alignment at CM002460.1:78888..80891+ (Nannochloropsis gaditana)
ATGTCGCTCCTCATGACCTACCACTCTATCTTACCAATCACGCCACAGAA
GGCCCTCTCCATGGCCCGtttattttcctcctccgctctccTGCTTATTT
CTgcgcttctccctcttctagACGTCGGAGGACATGAGGCATGGCCCGGG
AGCTTTACTTGCCCCCCAACGCAaaccctctctcccagggTGAATGCGTC
AGGCGTATGCGACTGTGCCGCTGGATGGGTCGGTCCGGAATGTGGAATTT
GCACGTCTGACGAAGCCTGTGCCAGcatcgaaggagagggtTCTAGGTGT
GCACAAACGTCCTTCGCCGGAGAAAAGAAACTGGTGAGGAGCTTCGTGAG
GGTGATGATGCGTGTAGGAAAGCCGCcgaagcaggaaaaagcgTAGGGGC
ACGCAGCGGATGGGGACAACTGTTATCGATATCATctctgctttctccct
caaTGTCTTAGGAAGCAATGCAAGTGAGGCGATGGCCAGCAACCCAAGTC
ACTTTTTTCCATtctgccctttctcctttattcttccatccccggtctct
ttttcttctttagGCGGGCTTTTGTGAAATAACGACCCCTGCCATTACGG
ACCTTTTGCACGGCACTGGCTTTGTGCAGATGAAGTTCGAGCCGGGcgac
ttctccttccttttcatcaAACGCCACGATAACCCCACAGACCCTGCCTT
GGCGACGTACCTGCCTATCTTCCGCTGCCAATCGGACAGGACGACCGTAA
AAACAAATCATGGCACCGGCGCTGTCACGTACACCTCTCCGGACTTATCC
TGCGCTTTGACCTGTGTGGTGGGGGAAGACCGTTCTTGCACGAGCATCTT
GGAGCGGGTGGTCAAAACCGTTGGGTCCTTGGGTGGAAGCACCATCATAT
GCGACCCCTTCACCAAAGCCTGCGCCGTGAAAGAGATCACGCTCGATACA
TTCATCGCCGGAGGGGTGAAAACGGCCAATTGTCAAGTGAGCGAATGCCT
GGCGCCTGTTCCTTTGGTGTCGCCCAAGACCACACCTTTGCAGCCTCCCT
CTGTGCCTGCGGCTCCCACAGCACCCGCCGCCCCAATTACCcgaacccct
ccctcttccacggcCTCTGTCGACCCGACCGTACCTGCAGCCTTGCCTGT
ACCCTCCAATCCTGCTCCTggcatccctctccccgcgaATTCCGCGACTG
GCACCCGTTCTGGCCCCCCCCGGGCGCTGCGAAGCTAAATGCAATCGCTT
AAGCGGAAAAGGATTGCTTGTCGCCGTGAGAGAGTTTGACAGTCGTTGGC
TCGGTAAGGAATCTAAATCATTGCAGGGGTCGTTTTTCACAGGGTGGTAA
TGTTGCGGCAGCGCAAGCATATGGCAGACGTTTACATATTTTCCTGCTCT
TCGCCTTTCAAACCAAGGTGTTGTAGGCACTGTGGTGTTCGTGTGGTTCA
GGGTTTCACACAACACTAGACAAGGACATAGGAAGGAATCttgtggatgg
agggaaggaaaaggacaggCGGAAGGGGCCATATCGGATTGCTTTTGCCG
TatgtggaggacaggggatGCGACGTAGCCCTACGATAGTCCCTTTACCT
CTGGATGACATGCTgctgaaggaaggaaaagaaggaaaaggcgaccagag
gttggggcggagggacggcgggaaAAAAGATGGAGTGGGGCAATGGAAGC
ACACTGCACAGACAGAGGGGTCTTGAcgcaggaaaggcggggagggcaag
agagaAGCGTGTACATAGGGCAAGCGGGCGTGCCCGAGGCTCGACAGTAC
GTTTGCATACAGACACATAGCAGGTATATGTATATTTGTTGCCAGGTTAA
TGGAGGTTGAAAAGCGCAATGGGAGCGGTCGCATTTGGAAAAAAAGCACG
CAAAAATTATGGATGATGTAATTATTGCTCTTCGTGATATCTAGCTTTTC
ATCGAGAAGCCACTGCACCGCAACAACTGAAACATTGTCTCCATCCCGAT
CACA
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Coding sequence (CDS) from alignment at CM002460.1:78888..80891+

>rna2854 ID=rna2854|Name=rna2854|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002460.1:78888..80891+ (Nannochloropsis gaditana)
ATGTCGCTCCTCATGACCTACCACTCTATCTTACCAATCACGCCACAGAA
GGCCCTCTCCATGGCCCGtttattttcctcctccgctctccTGCTTATTT
CTgcgcttctccctcttctagACGTCGGAGGACATGAGGCATGGCCCGGG
AGCTTTACTTGCCCCCCAACGCAaaccctctctcccagggTGAATGCGTC
AGGCGTATGCGACTGTGCCGCTGGATGGGTCGGTCCGGAATGTGGAATTT
GCACGTCTGACGAAGCCTGTGCCAGcatcgaaggagagggtTCTAGGTGT
GCACAAACGTCCTTCGCCGGAGAAAAGAAACTGGCGGGCTTTTGTGAAAT
AACGACCCCTGCCATTACGGACCTTTTGCACGGCACTGGCTTTGTGCAGA
TGAAGTTCGAGCCGGGcgacttctccttccttttcatcaAACGCCACGAT
AACCCCACAGACCCTGCCTTGGCGACGTACCTGCCTATCTTCCGCTGCCA
ATCGGACAGGACGACCGTAAAAACAAATCATGGCACCGGCGCTGTCACGT
ACACCTCTCCGGACTTATCCTGCGCTTTGACCTGTGTGGTGGGGGAAGAC
CGTTCTTGCACGAGCATCTTGGAGCGGGTGGTCAAAACCGTTGGGTCCTT
GGGTGGAAGCACCATCATATGCGACCCCTTCACCAAAGCCTGCGCCGTGA
AAGAGATCACGCTCGATACATTCATCGCCGGAGGGGTGAAAACGGCCAAT
TGTCAAGTGAGCGAATGCCTGGCGCCTGTTCCTTTGGTGTCGCCCAAGAC
CACACCTTTGCAGCCTCCCTCTGTGCCTGCGGCTCCCACAGCACCCGCCG
CCCCAATTACCcgaacccctccctcttccacggcCTCTGTCGACCCGACC
GTACCTGCAGCCTTGCCTGTACCCTCCAATCCTGCTCCTggcatccctct
ccccgcgaATTCCGCGACTGGCACCCGTTCTGGCCCCCCCCGGGCGCTGC
GAAGCTAAATGTCGCTCCTCATGACCTACCACTCTATCTTACCAATCACG
CCACAGAAGGCCCTCTCCATGGCCCGtttattttcctcctccgctctccT
GCTTATTTCTgcgcttctccctcttctagACGTCGGAGGACATGAGGCAT
GGCCCGGGAGCTTTACTTGCCCCCCAACGCAaaccctctctcccagggTG
AATGCGTCAGGCGTATGCGACTGTGCCGCTGGATGGGTCGGTCCGGAATG
TGGAATTTGCACGTCTGACGAAGCCTGTGCCAGcatcgaaggagagggtT
CTAGGTGTGCACAAACGTCCTTCGCCGGAGAAAAGAAACTGGCGGGCTTT
TGTGAAATAACGACCCCTGCCATTACGGACCTTTTGCACGGCACTGGCTT
TGTGCAGATGAAGTTCGAGCCGGGcgacttctccttccttttcatcaAAC
GCCACGATAACCCCACAGACCCTGCCTTGGCGACGTACCTGCCTATCTTC
CGCTGCCAATCGGACAGGACGACCGTAAAAACAAATCATGGCACCGGCGC
TGTCACGTACACCTCTCCGGACTTATCCTGCGCTTTGACCTGTGTGGTGG
GGGAAGACCGTTCTTGCACGAGCATCTTGGAGCGGGTGGTCAAAACCGTT
GGGTCCTTGGGTGGAAGCACCATCATATGCGACCCCTTCACCAAAGCCTG
CGCCGTGAAAGAGATCACGCTCGATACATTCATCGCCGGAGGGGTGAAAA
CGGCCAATTGTCAAGTGAGCGAATGCCTGGCGCCTGTTCCTTTGGTGTCG
CCCAAGACCACACCTTTGCAGCCTCCCTCTGTGCCTGCGGCTCCCACAGC
ACCCGCCGCCCCAATTACCcgaacccctccctcttccacggcCTCTGTCG
ACCCGACCGTACCTGCAGCCTTGCCTGTACCCTCCAATCCTGCTCCTggc
atccctctccccgcgaATTCCGCGACTGGCACCCGTTCTGGCCCCCCCCG
GGCGCTGCGAAGCTAA
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Synonyms
Publications