EWM27831.1, cds2846 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|585110155|gb|EWM27831.1| (EGF-like region, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0 Query: 1 MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 335 MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS Sbjct: 1 MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 335
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|553180550|ref|XP_005853422.1| (hypothetical protein NGA_0487310 [Nannochloropsis gaditana CCMP526] >gi|422295639|gb|EKU22938.1| hypothetical protein NGA_0487310 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 506.908 bits (1304), Expect = 8.866e-180 Identity = 267/315 (84.76%), Postives = 267/315 (84.76%), Query Frame = 0 Query: 21 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 335 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPR AGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS Sbjct: 1 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPR------------------------------------------------AGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 267
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|585107600|gb|EWM25738.1| (atp-dependent permease [Nannochloropsis gaditana]) HSP 1 Score: 180.644 bits (457), Expect = 4.369e-47 Identity = 98/249 (39.36%), Postives = 134/249 (53.82%), Query Frame = 0 Query: 51 SFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASI--EGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEP-GDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTAS 296 +FTC P LS V +G+C+C GW GP C ICT+D+AC + + +G C +F ++ G+C I +T+L+HG GFVQ+ + G F F F+KR + YL +FRC S +T V + G V Y+SPDL C +TCV+G DR+CT L +V VG+ GGS I CDP + C V+E TLD F+ GGV+T C +SEC + T A I R PP+ S Sbjct: 33 AFTCSPALALSESVGPNGLCECNPGWYGPTCEICTTDQACGILLRDSDGI-CRNDTFTAIRESFGWCAIANEDVTNLIHGDGFVQIYYAANGTFFFDFVKRRGD------GDYLSLFRCHSKKTKVTEDPKLGQVKYSSPDLVCNMTCVIGSDRTCTQGLSGIVDQVGAKGGSKITCDPAARTCDVQEATLDLFL-GGVQTTGCYMSEC-------------ARRGETVVVSTGSFANIARQPPAQQVS 260
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|585109722|gb|EWM27462.1| (putative abc transporter [Nannochloropsis gaditana]) HSP 1 Score: 82.8037 bits (203), Expect = 1.085e-13 Identity = 59/210 (28.10%), Postives = 86/210 (40.95%), Query Frame = 0 Query: 67 SGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLA------------GFCEITTPAITDLLHGTGFVQMKF-EPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGE-DRSCTSILERVVKTVGSLGGSTIICDPFTKA------CAVKEITLDTFIAGGVKTANCQVSEC 256 + C C GW GPEC +CT+ AC + + + G +++ G C +TT A+++ L G FV + G F F+K Y +FRC T + T + + P C +TC VG D SCT + + VG+ G T+ C+ A C V E LD F GV+ +C EC Sbjct: 62 TNACACRTGWTGPECSVCTASSACQAASDRDNEANSNNVLGTTRMSCERSLEVIEKTHGVCRVTTQAVSNFLQGQAFVTAQITAAGAMHFEFVK-----VTGERDVYASMFRCSGVGCTQVKDPKTNKIQTSCPAAQCNMTCEVGGPDESCTEFVASQIAQVGTKGPVTLTCNDEATAPANGAQCIVHENLLD-FYFQGVELDDCHFGEC 265
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|553186132|ref|XP_005854367.1| (hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526] >gi|553187649|ref|XP_005854649.1| hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >gi|422294406|gb|EKU21706.1| hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >gi|422294695|gb|EKU21995.1| hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 72.7886 bits (177), Expect = 8.322e-11 Identity = 52/202 (25.74%), Postives = 82/202 (40.59%), Query Frame = 0 Query: 70 CDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKF----EPG-----DFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNH------GTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSEC 256 C C W GPEC +CT D C G G C + + ++L G C I T D L G G + ++ G D L + NP+ P + + P+F C + + G V SC C ED C ++ +++ ++G G +IC+ +C + E LD + G+ C++ EC Sbjct: 58 CVCVDNWTGPECRVCTDDSVC----GSGQLC-RHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGATPAPDAGLLDLTVFANPS-PGI--FRPVFSCAGRQCLLSKEKDSPGAAGGARVGMQCQQSSCTALCDKAEDAFCIDLMLQLLASIGETGTLDLICEADGDSCVMHEAVLDAYFK-GIVFDECRLGEC 250 The following BLAST results are available for this feature:
BLAST of EWM27831.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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