EWM27831.1, cds2846 (CDS) Nannochloropsis gaditana

Overview
NameEWM27831.1
Unique Namecds2846
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:78888..79220 +
Alignment locationCM002460.1:79451..80125 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27831.1
ProductEGF-like region, conserved site
Orig transcript idgnl|cribi|Naga_100074g17.789.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:78888..79220 +
CM002460.1supercontigCM002460.1:79451..80125 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|585110155|gb|EWM27831.1| (EGF-like region, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query:    1 MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 335
            MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS
Sbjct:    1 MSLLMTYHSILPITPQKALSMARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 335          
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|553180550|ref|XP_005853422.1| (hypothetical protein NGA_0487310 [Nannochloropsis gaditana CCMP526] >gi|422295639|gb|EKU22938.1| hypothetical protein NGA_0487310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 506.908 bits (1304), Expect = 8.866e-180
Identity = 267/315 (84.76%), Postives = 267/315 (84.76%), Query Frame = 0
Query:   21 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 335
            MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPR                                                AGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS
Sbjct:    1 MARLFSSSALLLISALLPLLDVGGHEAWPGSFTCPPTQTLSPR------------------------------------------------AGFCEITTPAITDLLHGTGFVQMKFEPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTASVDPTVPAALPVPSNPAPGIPLPANSATGTRSGPPRALRS 267          
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|585107600|gb|EWM25738.1| (atp-dependent permease [Nannochloropsis gaditana])

HSP 1 Score: 180.644 bits (457), Expect = 4.369e-47
Identity = 98/249 (39.36%), Postives = 134/249 (53.82%), Query Frame = 0
Query:   51 SFTCPPTQTLSPRVNASGVCDCAAGWVGPECGICTSDEACASI--EGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKFEP-GDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSECLAPVPLVSPKTTPLQPPSVPAAPTAPAAPITRTPPSSTAS 296
            +FTC P   LS  V  +G+C+C  GW GP C ICT+D+AC  +  + +G  C   +F   ++  G+C I    +T+L+HG GFVQ+ +   G F F F+KR  +        YL +FRC S +T V  +   G V Y+SPDL C +TCV+G DR+CT  L  +V  VG+ GGS I CDP  + C V+E TLD F+ GGV+T  C +SEC              +        T   A I R PP+   S
Sbjct:   33 AFTCSPALALSESVGPNGLCECNPGWYGPTCEICTTDQACGILLRDSDGI-CRNDTFTAIRESFGWCAIANEDVTNLIHGDGFVQIYYAANGTFFFDFVKRRGD------GDYLSLFRCHSKKTKVTEDPKLGQVKYSSPDLVCNMTCVIGSDRTCTQGLSGIVDQVGAKGGSKITCDPAARTCDVQEATLDLFL-GGVQTTGCYMSEC-------------ARRGETVVVSTGSFANIARQPPAQQVS 260          
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|585109722|gb|EWM27462.1| (putative abc transporter [Nannochloropsis gaditana])

HSP 1 Score: 82.8037 bits (203), Expect = 1.085e-13
Identity = 59/210 (28.10%), Postives = 86/210 (40.95%), Query Frame = 0
Query:   67 SGVCDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLA------------GFCEITTPAITDLLHGTGFVQMKF-EPGDFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNHGTGAVTYTSPDLSCALTCVVGE-DRSCTSILERVVKTVGSLGGSTIICDPFTKA------CAVKEITLDTFIAGGVKTANCQVSEC 256
            +  C C  GW GPEC +CT+  AC +     +     +  G  +++            G C +TT A+++ L G  FV  +    G   F F+K            Y  +FRC     T   +  T  +  + P   C +TC VG  D SCT  +   +  VG+ G  T+ C+    A      C V E  LD F   GV+  +C   EC
Sbjct:   62 TNACACRTGWTGPECSVCTASSACQAASDRDNEANSNNVLGTTRMSCERSLEVIEKTHGVCRVTTQAVSNFLQGQAFVTAQITAAGAMHFEFVK-----VTGERDVYASMFRCSGVGCTQVKDPKTNKIQTSCPAAQCNMTCEVGGPDESCTEFVASQIAQVGTKGPVTLTCNDEATAPANGAQCIVHENLLD-FYFQGVELDDCHFGEC 265          
BLAST of EWM27831.1 vs. NCBI_GenBank
Match: gi|553186132|ref|XP_005854367.1| (hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526] >gi|553187649|ref|XP_005854649.1| hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >gi|422294406|gb|EKU21706.1| hypothetical protein NGA_0167502, partial [Nannochloropsis gaditana CCMP526] >gi|422294695|gb|EKU21995.1| hypothetical protein NGA_0167501, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.7886 bits (177), Expect = 8.322e-11
Identity = 52/202 (25.74%), Postives = 82/202 (40.59%), Query Frame = 0
Query:   70 CDCAAGWVGPECGICTSDEACASIEGEGSRCAQTSFAGEKKLAGFCEITTPAITDLLHGTGFVQMKF----EPG-----DFSFLFIKRHDNPTDPALATYLPIFRCQSDRTTVKTNH------GTGAVTYTSPDLSCALTCVVGEDRSCTSILERVVKTVGSLGGSTIICDPFTKACAVKEITLDTFIAGGVKTANCQVSEC 256
            C C   W GPEC +CT D  C    G G  C + +    ++L G C I T    D L G G + ++       G     D   L +    NP+ P +  + P+F C   +  +          G   V       SC   C   ED  C  ++ +++ ++G  G   +IC+    +C + E  LD +   G+    C++ EC
Sbjct:   58 CVCVDNWTGPECRVCTDDSVC----GSGQLC-RHALPMYQRLEGVCNIFTKGFADFLGGAGTLALQMGMTDSEGATPAPDAGLLDLTVFANPS-PGI--FRPVFSCAGRQCLLSKEKDSPGAAGGARVGMQCQQSSCTALCDKAEDAFCIDLMLQLLASIGETGTLDLICEADGDSCVMHEAVLDAYFK-GIVFDECRLGEC 250          
The following BLAST results are available for this feature:
BLAST of EWM27831.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585110155|gb|EWM27831.1|0.000e+0100.00EGF-like region, conserved site [Nannochloropsis g... [more]
gi|553180550|ref|XP_005853422.1|8.866e-18084.76hypothetical protein NGA_0487310 [Nannochloropsis ... [more]
gi|585107600|gb|EWM25738.1|4.369e-4739.36atp-dependent permease [Nannochloropsis gaditana][more]
gi|585109722|gb|EWM27462.1|1.085e-1328.10putative abc transporter [Nannochloropsis gaditana... [more]
gi|553186132|ref|XP_005854367.1|8.322e-1125.74hypothetical protein NGA_0167501, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2854rna2854Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications