rna2822, rna2822 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2822
Unique Name	rna2822
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	612
Alignment location	CM002459.1:1331101..1332674 +

Link to JBrowse

Properties


Property Name	Value
Product	signal recognition particle 19 kda
Orig transcript id	gnl\|cribi\|Naga_101134g1.8899.mrna
Orig protein id	gnl\|cribi\|Naga_101134g1.8899
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1331101..1332674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101134g1	gene2701	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2822	rna2822-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27860.1	cds2814	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1331101..1332674+
coding sequence from alignment at CM002459.1:1331101..1332674+

mRNA sequence

>rna2822 ID=rna2822|Name=rna2822|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
CCTTTTTTTCCCGACAGAAAGAAGCAGGAGGGACAGCATGCTCTTCCCAA
GAGGGACTCACTGTCTGTCCTGCAGAAAGCGTGGGTTTTATATCGGACGC
CTATTCTCCGTGCTGGCATTCGCCTCCTTGGCGGCGCCCTCCCTTGCCCG
TCCGCGCCACCATGTGGAATACGTGCCATCTTTGCCCATTTCGAGTGGTA
ACGCCGTCGTGAGCAATGCCATGGGTGTGATGGAAGGCGCTGGTGGAATC
GAGGACGAAACCAGTCGACTGCAGATCCAAATCCCTCGCGACCTGTTCAA
ACCTGACGGCTACAACCACAAGGAGGCGCTCTTTGGGATCCCGGTCTACG
GCGGCTTCATTGCGGAGAAGCTTTACTACGCCAATACCACCAAAATGTGC
TCTGCGCCCACAGCCGACGAGGTGGCGCAGTGGAAGAGTCCTTATATTCT
CATGGTGGACCGCGGGGACTGCACCTTTGTCACTAAGGTCCGGCACGCCC
AGCACGCTGGGGCCTCCGGCGTTCTGGTCGCAGACAACTTGTGCGTCTGC
AAGGACCTCGCCTGCCACCCCGACCCTGACACCTCCTGCCAGGGCATTGA
GCCGGTGCGTTT

protein sequence of rna2822

>rna2822-protein ID=rna2822-protein|Name=rna2822|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVA
YPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSV
HDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFP
SRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGA
GGGESGEGGGGGNRKKKKGKKGRK

mRNA from alignment at CM002459.1:1331101..1332674+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2822 ID=rna2822|Name=rna2822|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp|location=Sequence derived from alignment at CM002459.1:1331101..1332674+ (Nannochloropsis gaditana)
gaggtcTACTTGCTTTGTATTCACTCGTGTATCTCCTTCCACAACACCAC
TCCACAGCCGTCTAGGGAGAGTTTACACACAATGCAACGgcagcgaaggg
aggaagagcgcaTCAGCAGCGCTGCGATGAATGCAGCTGTGTCACAGGCA
GAGGCACTGGGCATGACGCCTGTAAGTGTGGTACGGGGTGCGGGGATGAG
gttgggaggaaggcatcaGGCAACGGAGAAACACAAGTGAGCTCGCTTTG
AAGGGATACCTTTCAAAATTGCATACCGTCAGGACTCTCTGCTCAGGCCC
TGCGATGCAGTGAGCGGCATTCACACGCTCATTCATGCACATGCGAACAG
GAAGAGTTGCAACAGACTATCGACCAGATGCACCTGCACGATCAACACGC
CATAGTCGCCTATCCCGGCTCCAGGCCTCGAGATCAAGAGCAATTGCTAG
AGGACAGCAAGGTTGTTATGGCTGTGATTATCGATGACAAGAATGCTAGA
GAAGAAATTGCGTGGATTATGTTTCTTGTGAAGTTGTACAGGTCTCCCTT
TTCACACAgttctctctcctctccctgatTGTTACCCTTCAAGACCTTCG
TGACAGTGTGGCCCAATTACCTGGATGCAGAAAAAACACTATTCCAAGGC
CGGCGGATACCCAAAGAGAAGGCATGCCCCAACCCGTCGGTGCACGATAT
CTCGGACCTGCTGGTCCAGTGGGAGCTCGCGCACATTGTTGAGCAGCACA
AAAGGTGGGTGGGCCGAGGGCCtgggcgacgaggaggcgcgggacgGGCA
TCGATGTCATGAACAGGAGGGTAGTGCcgagtggtggaggagggatgggc
gaCAGGAGGCGATGAAGCGCTGGCAGGACACACCTGGCTTGCTCAGCCTG
ACcaacgctttcctccccctgcggGCTGGTCGTGGGCCTACCGTCCCCAC
TACTGACACCAACACTAAGACTGCCTGCGCGCGACAAcaacttccctccc
ccccaggtACCCGCGGGACTGGCTCTCCTACGGCCGCGTCCGGGTGGAGC
TCAAAGACCCGATCACAGGcgcgcccctccaccccgatTTTCCCTCCAGG
AGGGCCCTGCTCTTGAAGCTGGGTGAGGAATCAAacgcggcgggagggca
aAGGCGTCGGGTCgggtagggggggggctACCTGCGTCGCATCCCCTCAC
GCTGTcatgcccctctctctttgaCCCGGTGCACAGGCGAGTCGATTCCC
GGCCTGAGCAGCCGCAAGGTGCGtctggaggcggaagcagcGGCCCTGAA
GGCTGCCCAGCAGAAGaatgctgccgccgccgctgcctccgcaACGCCCT
TGggagccgggggaggggaaagcggggaagggggggggggcggcaatcgg
aagaaaaagaagggaaagaagggacggaAATAGCTCTGTAGATAGCTATT
GAAAGGCCTTGTCGTCGAATAAAATCAAAATAAAGCAAAGATCCCGCTGC
CTTGAGGACAGGACTTGCGCTCGACTGATCGTGATCTACATGTTTGGTTA
AAGTCTAGTCCGCACACGCATGCC

Coding sequence (CDS) from alignment at CM002459.1:1331101..1332674+

>rna2822 ID=rna2822|Name=rna2822|organism=Nannochloropsis gaditana|type=CDS|length=3375bp|location=Sequence derived from alignment at CM002459.1:1331101..1332674+ (Nannochloropsis gaditana)
ATGCAACGgcagcgaagggaggaagagcgcaTCAGCAGCGCTGCGATGAA
TGCAGCTGTGTCACAGGCAGAGGCACTGGGCATGACGCCTGAAGAGTTGC
AACAGACTATCGACCAGATGCACCTGCACGATCAACACGCCATAGTCGCC
TATCCCGGCTCCAGGCCTCGAGATCAAGAGCAATTGCTAGAGGACAGCAA
GACCTTCGTGACAGTGTGGCCCAATTACCTGGATGCAGAAAAAACACTAT
TCCAAGGCCGGCGGATACCCAAAGAGAAGGCATGCCCCAACCCGTCGGTG
CACGATATCTCGGACCTGCTGGTCCAGTGGGAGCTCGCGCACATTGTTGA
GCAGCACAAAAGgtACCCGCGGGACTGGCTCTCCTACGGCCGCGTCCGGG
TGGAGCTCAAAGACCCGATCACAGGcgcgcccctccaccccgatTTTCCC
TCCAGGAGGGCCCTGCTCTTGAAGCTGGGCGAGTCGATTCCCGGCCTGAG
CAGCCGCAAGGTGCGtctggaggcggaagcagcGGCCCTGAAGGCTGCCC
AGCAGAAGaatgctgccgccgccgctgcctccgcaACGCCCTTGggagcc
gggggaggggaaagcggggaagggggggggggcggcaatcggaagaaaaa
gaagggaaagaagggacggaAATAGATGCAACGgcagcgaagggaggaag
agcgcaTCAGCAGCGCTGCGATGAATGCAGCTGTGTCACAGGCAGAGGCA
CTGGGCATGACGCCTGAAGAGTTGCAACAGACTATCGACCAGATGCACCT
GCACGATCAACACGCCATAGTCGCCTATCCCGGCTCCAGGCCTCGAGATC
AAGAGCAATTGCTAGAGGACAGCAAGACCTTCGTGACAGTGTGGCCCAAT
TACCTGGATGCAGAAAAAACACTATTCCAAGGCCGGCGGATACCCAAAGA
GAAGGCATGCCCCAACCCGTCGGTGCACGATATCTCGGACCTGCTGGTCC
AGTGGGAGCTCGCGCACATTGTTGAGCAGCACAAAAGgtACCCGCGGGAC
TGGCTCTCCTACGGCCGCGTCCGGGTGGAGCTCAAAGACCCGATCACAGG
cgcgcccctccaccccgatTTTCCCTCCAGGAGGGCCCTGCTCTTGAAGC
TGGGCGAGTCGATTCCCGGCCTGAGCAGCCGCAAGGTGCGtctggaggcg
gaagcagcGGCCCTGAAGGCTGCCCAGCAGAAGaatgctgccgccgccgc
tgcctccgcaACGCCCTTGggagccgggggaggggaaagcggggaagggg
gggggggcggcaatcggaagaaaaagaagggaaagaagggacggaAATAG
ATGCAACGgcagcgaagggaggaagagcgcaTCAGCAGCGCTGCGATGAA
TGCAGCTGTGTCACAGGCAGAGGCACTGGGCATGACGCCTGAAGAGTTGC
AACAGACTATCGACCAGATGCACCTGCACGATCAACACGCCATAGTCGCC
TATCCCGGCTCCAGGCCTCGAGATCAAGAGCAATTGCTAGAGGACAGCAA
GACCTTCGTGACAGTGTGGCCCAATTACCTGGATGCAGAAAAAACACTAT
TCCAAGGCCGGCGGATACCCAAAGAGAAGGCATGCCCCAACCCGTCGGTG
CACGATATCTCGGACCTGCTGGTCCAGTGGGAGCTCGCGCACATTGTTGA
GCAGCACAAAAGgtACCCGCGGGACTGGCTCTCCTACGGCCGCGTCCGGG
TGGAGCTCAAAGACCCGATCACAGGcgcgcccctccaccccgatTTTCCC
TCCAGGAGGGCCCTGCTCTTGAAGCTGGGCGAGTCGATTCCCGGCCTGAG
CAGCCGCAAGGTGCGtctggaggcggaagcagcGGCCCTGAAGGCTGCCC
AGCAGAAGaatgctgccgccgccgctgcctccgcaACGCCCTTGggagcc
gggggaggggaaagcggggaagggggggggggcggcaatcggaagaaaaa
gaagggaaagaagggacggaAATAGATGCAACGgcagcgaagggaggaag
agcgcaTCAGCAGCGCTGCGATGAATGCAGCTGTGTCACAGGCAGAGGCA
CTGGGCATGACGCCTGAAGAGTTGCAACAGACTATCGACCAGATGCACCT
GCACGATCAACACGCCATAGTCGCCTATCCCGGCTCCAGGCCTCGAGATC
AAGAGCAATTGCTAGAGGACAGCAAGACCTTCGTGACAGTGTGGCCCAAT
TACCTGGATGCAGAAAAAACACTATTCCAAGGCCGGCGGATACCCAAAGA
GAAGGCATGCCCCAACCCGTCGGTGCACGATATCTCGGACCTGCTGGTCC
AGTGGGAGCTCGCGCACATTGTTGAGCAGCACAAAAGgtACCCGCGGGAC
TGGCTCTCCTACGGCCGCGTCCGGGTGGAGCTCAAAGACCCGATCACAGG
cgcgcccctccaccccgatTTTCCCTCCAGGAGGGCCCTGCTCTTGAAGC
TGGGCGAGTCGATTCCCGGCCTGAGCAGCCGCAAGGTGCGtctggaggcg
gaagcagcGGCCCTGAAGGCTGCCCAGCAGAAGaatgctgccgccgccgc
tgcctccgcaACGCCCTTGggagccgggggaggggaaagcggggaagggg
gggggggcggcaatcggaagaaaaagaagggaaagaagggacggaAATAG
ATGCAACGgcagcgaagggaggaagagcgcaTCAGCAGCGCTGCGATGAA
TGCAGCTGTGTCACAGGCAGAGGCACTGGGCATGACGCCTGAAGAGTTGC
AACAGACTATCGACCAGATGCACCTGCACGATCAACACGCCATAGTCGCC
TATCCCGGCTCCAGGCCTCGAGATCAAGAGCAATTGCTAGAGGACAGCAA
GACCTTCGTGACAGTGTGGCCCAATTACCTGGATGCAGAAAAAACACTAT
TCCAAGGCCGGCGGATACCCAAAGAGAAGGCATGCCCCAACCCGTCGGTG
CACGATATCTCGGACCTGCTGGTCCAGTGGGAGCTCGCGCACATTGTTGA
GCAGCACAAAAGgtACCCGCGGGACTGGCTCTCCTACGGCCGCGTCCGGG
TGGAGCTCAAAGACCCGATCACAGGcgcgcccctccaccccgatTTTCCC
TCCAGGAGGGCCCTGCTCTTGAAGCTGGGCGAGTCGATTCCCGGCCTGAG
CAGCCGCAAGGTGCGtctggaggcggaagcagcGGCCCTGAAGGCTGCCC
AGCAGAAGaatgctgccgccgccgctgcctccgcaACGCCCTTGggagcc
gggggaggggaaagcggggaagggggggggggcggcaatcggaagaaaaa
gaagggaaagaagggacggaAATAG

Synonyms

Publications