EWM27860.1, cds2814 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|585110188|gb|EWM27860.1| (signal recognition particle 19 kda [Nannochloropsis gaditana]) HSP 1 Score: 458.373 bits (1178), Expect = 3.226e-163 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 Query: 1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK Sbjct: 1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|553192034|ref|XP_005855502.1| (signal recognition particle subunit SRP19 [Nannochloropsis gaditana CCMP526] >gi|422293560|gb|EKU20860.1| signal recognition particle subunit SRP19 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 356.681 bits (914), Expect = 9.605e-124 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 Query: 1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK 170 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK Sbjct: 1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK 170
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|325186366|emb|CCA20872.1| (transmembrane protein putative [Albugo laibachii Nc14]) HSP 1 Score: 122.865 bits (307), Expect = 1.040e-30 Identity = 67/174 (38.51%), Postives = 100/174 (57.47%), Query Frame = 0 Query: 27 GMTPEELQQTIDQMHLHDQHAIVAYPG---SRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAA-ALKAAQQKNAAAAAASAT 196 GM P E H ++ Y G P D ++F+T++PNY++A K L GRR PK +AC NP V ++S++ + L H++E HKRYPRDW+ GRVRV L++ + +P+ SR+ L++++G IP L SR RLE EAA A+K + AAA +S++ Sbjct: 88 GMVPPEFNGI--------PHGVIVYHGISKDTPID--------RSFITIYPNYINALKALALGRRTPKSQACDNPLVEELSEICAYFNLPHLIETHKRYPRDWMVLGRVRVRLRNA-SNEWENPNIQSRKQLMVQMGSLIPKLQSRAKRLEKEAAEAVKKSLTVTTAAAVSSSS 244
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|953487600|emb|CEG48428.1| (signal recognition particle 19 kda family protein [Plasmopara halstedii]) HSP 1 Score: 116.316 bits (290), Expect = 2.830e-28 Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 0 Query: 66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEA 177 + TF T +PNY+D +KTL QGRRI KE+AC P ++S++ L H++E K+YPRDW+ GR+RV L +D G +P+ P+R++L++K+ E IP L SRKVRLE EA Sbjct: 107 TSTFTTFYPNYIDIKKTLHQGRRISKEQACDTPIADEMSEICTFLRLPHVLEPAKKYPRDWMVVGRIRVRLVRD--DGTLENPEIPNRKSLMIKMAELIPQLQSRKVRLENEA 217
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|1214702258|gb|OWZ14482.1| (Transmembrane protein [Phytophthora megakarya]) HSP 1 Score: 115.161 bits (287), Expect = 1.157e-27 Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 0 Query: 66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173 + TF T +PNY+D +KT+ QGRRIP+EKAC P ++S++ ++L H++E K+YPRDWL GR+RV L +D G P + + P+R+ L++K+ E IP L SRKVRL Sbjct: 131 TSTFFTFYPNYIDNKKTVQQGRRIPQEKACEKPIADEMSEVCTYFKLPHVLEPSKKYPRDWLVSGRIRVRLVRD--DGTPENAEIPNRKTLMVKMAELIPKLQSRKVRL 237
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|635358688|emb|CCI11490.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 112.849 bits (281), Expect = 4.216e-27 Identity = 49/107 (45.79%), Postives = 75/107 (70.09%), Query Frame = 0 Query: 67 KTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173 ++F+T++PNY++A KTL GRRIPK +AC +P V ++S++ + L H++E HKRYPRDW+ GRVRV L++ +P+ SR+ L++++G IP L SR RL Sbjct: 89 RSFITIFPNYINAAKTLAMGRRIPKSQACDDPLVEELSEICAYFNLPHLIETHKRYPRDWMVLGRVRVRLRNA-NNEWENPNIQSRKQLMVQMGSLIPKLQSRAKRL 194
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|301121576|ref|XP_002908515.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262103546|gb|EEY61598.1| transmembrane protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 112.849 bits (281), Expect = 1.111e-26 Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 0 Query: 66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVE-LKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173 + TF+T +PNY+D +KT+ QGRRIPK AC P ++S++ ++L H++E K+YPRDWL GR+RV L+D G P + D P+R+ L++K+ E IP L SRKVRL Sbjct: 128 TSTFMTFYPNYIDDKKTVQQGRRIPKLSACEAPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLLRD--DGTPENADIPNRKTLMIKMAELIPKLQSRKVRL 234
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|695405829|ref|XP_009523933.1| (hypothetical protein PHYSODRAFT_299044 [Phytophthora sojae] >gi|348681400|gb|EGZ21216.1| hypothetical protein PHYSODRAFT_299044 [Phytophthora sojae]) HSP 1 Score: 108.997 bits (271), Expect = 3.463e-25 Identity = 50/109 (45.87%), Postives = 77/109 (70.64%), Query Frame = 0 Query: 66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173 + +F T +PNY+D +KT+ QGRRI + +AC P ++S++ ++L H++E K+YPRDWL GR+RV L +D GAP +P+ P+R+ L++K+ E IP L SRK+RL Sbjct: 129 TASFFTFYPNYIDNKKTVQQGRRISQAQACEAPLADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRD--DGAPENPEIPTRKVLMVKMAELIPKLQSRKLRL 235
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|970643975|gb|KUF85013.1| (Signal recognition particle 19 kDa protein [Phytophthora nicotianae]) HSP 1 Score: 106.301 bits (264), Expect = 3.297e-24 Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 0 Query: 66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224 + TF+T +PNY+D +KT+ QGRRIPK+ AC P ++S++ ++L H++E K+YPRDWL GR+RV L +D G P +PD P+R+ L++K+ E IP L SRKVRLE EA K A AA S KKK KKGR+ Sbjct: 129 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRD--NGTPENPDIPNRKTLMIKMAELIPKLQSRKVRLEKEAEEAKKKAAAAAGAATTSGG-----------------GKKKGKKKGRR 269
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|675213393|ref|XP_008915581.1| (hypothetical protein PPTG_19074, partial [Phytophthora parasitica INRA-310] >gi|568084161|gb|ETM99101.1| hypothetical protein PPTG_19074, partial [Phytophthora parasitica INRA-310]) HSP 1 Score: 106.301 bits (264), Expect = 3.874e-24 Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 0 Query: 66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224 + TF+T +PNY+D +KT+ QGRRIPK+ AC P ++S++ ++L H++E K+YPRDWL GR+RV L +D G P +PD P+R+ L++K+ E IP L SRKVRLE EA K A AA S KKK KKGR+ Sbjct: 142 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRD--NGTPENPDIPNRKTLMIKMAELIPKLQSRKVRLEKEAEEAKKKAAAAAGAATTSGG-----------------GKKKGKKKGRR 282 The following BLAST results are available for this feature:
BLAST of EWM27860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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