EWM27860.1, cds2814 (CDS) Nannochloropsis gaditana

Overview
NameEWM27860.1
Unique Namecds2814
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1331182..1331271 +
Alignment locationCM002459.1:1331451..1331561 +
Alignment locationCM002459.1:1331694..1331854 +
Alignment locationCM002459.1:1332107..1332222 +
Alignment locationCM002459.1:1332337..1332533 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27860.1
Productsignal recognition particle 19 kda
Orig transcript idgnl|cribi|Naga_101134g1.8899.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1331182..1331271 +
CM002459.1supercontigCM002459.1:1331451..1331561 +
CM002459.1supercontigCM002459.1:1331694..1331854 +
CM002459.1supercontigCM002459.1:1332107..1332222 +
CM002459.1supercontigCM002459.1:1332337..1332533 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:00083127S RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002778Signal_recog_particle_SRP19
Homology
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|585110188|gb|EWM27860.1| (signal recognition particle 19 kda [Nannochloropsis gaditana])

HSP 1 Score: 458.373 bits (1178), Expect = 3.226e-163
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224
            MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK
Sbjct:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|553192034|ref|XP_005855502.1| (signal recognition particle subunit SRP19 [Nannochloropsis gaditana CCMP526] >gi|422293560|gb|EKU20860.1| signal recognition particle subunit SRP19 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 356.681 bits (914), Expect = 9.605e-124
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK 170
            MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK
Sbjct:    1 MQRQRREEERISSAAMNAAVSQAEALGMTPEELQQTIDQMHLHDQHAIVAYPGSRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRK 170          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|325186366|emb|CCA20872.1| (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 122.865 bits (307), Expect = 1.040e-30
Identity = 67/174 (38.51%), Postives = 100/174 (57.47%), Query Frame = 0
Query:   27 GMTPEELQQTIDQMHLHDQHAIVAYPG---SRPRDQEQLLEDSKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAA-ALKAAQQKNAAAAAASAT 196
            GM P E             H ++ Y G     P D        ++F+T++PNY++A K L  GRR PK +AC NP V ++S++   + L H++E HKRYPRDW+  GRVRV L++  +    +P+  SR+ L++++G  IP L SR  RLE EAA A+K +     AAA +S++
Sbjct:   88 GMVPPEFNGI--------PHGVIVYHGISKDTPID--------RSFITIYPNYINALKALALGRRTPKSQACDNPLVEELSEICAYFNLPHLIETHKRYPRDWMVLGRVRVRLRNA-SNEWENPNIQSRKQLMVQMGSLIPKLQSRAKRLEKEAAEAVKKSLTVTTAAAVSSSS 244          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|953487600|emb|CEG48428.1| (signal recognition particle 19 kda family protein [Plasmopara halstedii])

HSP 1 Score: 116.316 bits (290), Expect = 2.830e-28
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 0
Query:   66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEA 177
            + TF T +PNY+D +KTL QGRRI KE+AC  P   ++S++     L H++E  K+YPRDW+  GR+RV L +D   G   +P+ P+R++L++K+ E IP L SRKVRLE EA
Sbjct:  107 TSTFTTFYPNYIDIKKTLHQGRRISKEQACDTPIADEMSEICTFLRLPHVLEPAKKYPRDWMVVGRIRVRLVRD--DGTLENPEIPNRKSLMIKMAELIPQLQSRKVRLENEA 217          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|1214702258|gb|OWZ14482.1| (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 115.161 bits (287), Expect = 1.157e-27
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173
            + TF T +PNY+D +KT+ QGRRIP+EKAC  P   ++S++   ++L H++E  K+YPRDWL  GR+RV L +D   G P + + P+R+ L++K+ E IP L SRKVRL
Sbjct:  131 TSTFFTFYPNYIDNKKTVQQGRRIPQEKACEKPIADEMSEVCTYFKLPHVLEPSKKYPRDWLVSGRIRVRLVRD--DGTPENAEIPNRKTLMVKMAELIPKLQSRKVRL 237          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|635358688|emb|CCI11490.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 112.849 bits (281), Expect = 4.216e-27
Identity = 49/107 (45.79%), Postives = 75/107 (70.09%), Query Frame = 0
Query:   67 KTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVELKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173
            ++F+T++PNY++A KTL  GRRIPK +AC +P V ++S++   + L H++E HKRYPRDW+  GRVRV L++       +P+  SR+ L++++G  IP L SR  RL
Sbjct:   89 RSFITIFPNYINAAKTLAMGRRIPKSQACDDPLVEELSEICAYFNLPHLIETHKRYPRDWMVLGRVRVRLRNA-NNEWENPNIQSRKQLMVQMGSLIPKLQSRAKRL 194          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|301121576|ref|XP_002908515.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262103546|gb|EEY61598.1| transmembrane protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 112.849 bits (281), Expect = 1.111e-26
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 0
Query:   66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVE-LKDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173
            + TF+T +PNY+D +KT+ QGRRIPK  AC  P   ++S++   ++L H++E  K+YPRDWL  GR+RV  L+D   G P + D P+R+ L++K+ E IP L SRKVRL
Sbjct:  128 TSTFMTFYPNYIDDKKTVQQGRRIPKLSACEAPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLLRD--DGTPENADIPNRKTLMIKMAELIPKLQSRKVRL 234          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|695405829|ref|XP_009523933.1| (hypothetical protein PHYSODRAFT_299044 [Phytophthora sojae] >gi|348681400|gb|EGZ21216.1| hypothetical protein PHYSODRAFT_299044 [Phytophthora sojae])

HSP 1 Score: 108.997 bits (271), Expect = 3.463e-25
Identity = 50/109 (45.87%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRL 173
            + +F T +PNY+D +KT+ QGRRI + +AC  P   ++S++   ++L H++E  K+YPRDWL  GR+RV L +D   GAP +P+ P+R+ L++K+ E IP L SRK+RL
Sbjct:  129 TASFFTFYPNYIDNKKTVQQGRRISQAQACEAPLADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRD--DGAPENPEIPTRKVLMVKMAELIPKLQSRKLRL 235          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|970643975|gb|KUF85013.1| (Signal recognition particle 19 kDa protein [Phytophthora nicotianae])

HSP 1 Score: 106.301 bits (264), Expect = 3.297e-24
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 0
Query:   66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224
            + TF+T +PNY+D +KT+ QGRRIPK+ AC  P   ++S++   ++L H++E  K+YPRDWL  GR+RV L +D   G P +PD P+R+ L++K+ E IP L SRKVRLE EA   K      A AA  S                    KKK  KKGR+
Sbjct:  129 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRD--NGTPENPDIPNRKTLMIKMAELIPKLQSRKVRLEKEAEEAKKKAAAAAGAATTSGG-----------------GKKKGKKKGRR 269          
BLAST of EWM27860.1 vs. NCBI_GenBank
Match: gi|675213393|ref|XP_008915581.1| (hypothetical protein PPTG_19074, partial [Phytophthora parasitica INRA-310] >gi|568084161|gb|ETM99101.1| hypothetical protein PPTG_19074, partial [Phytophthora parasitica INRA-310])

HSP 1 Score: 106.301 bits (264), Expect = 3.874e-24
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 0
Query:   66 SKTFVTVWPNYLDAEKTLFQGRRIPKEKACPNPSVHDISDLLVQWELAHIVEQHKRYPRDWLSYGRVRVEL-KDPITGAPLHPDFPSRRALLLKLGESIPGLSSRKVRLEAEAAALKAAQQKNAAAAAASATPLGAGGGESGEGGGGGNRKKKKGKKGRK 224
            + TF+T +PNY+D +KT+ QGRRIPK+ AC  P   ++S++   ++L H++E  K+YPRDWL  GR+RV L +D   G P +PD P+R+ L++K+ E IP L SRKVRLE EA   K      A AA  S                    KKK  KKGR+
Sbjct:  142 TSTFMTFYPNYIDNKKTVQQGRRIPKQNACETPIADEMSEVCTYFKLPHVLEPAKKYPRDWLVSGRIRVRLVRD--NGTPENPDIPNRKTLMIKMAELIPKLQSRKVRLEKEAEEAKKKAAAAAGAATTSGG-----------------GKKKGKKKGRR 282          
The following BLAST results are available for this feature:
BLAST of EWM27860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110188|gb|EWM27860.1|3.226e-163100.00signal recognition particle 19 kda [Nannochloropsi... [more]
gi|553192034|ref|XP_005855502.1|9.605e-124100.00signal recognition particle subunit SRP19 [Nannoch... [more]
gi|325186366|emb|CCA20872.1|1.040e-3038.51transmembrane protein putative [Albugo laibachii N... [more]
gi|953487600|emb|CEG48428.1|2.830e-2848.67signal recognition particle 19 kda family protein ... [more]
gi|1214702258|gb|OWZ14482.1|1.157e-2748.62Transmembrane protein [Phytophthora megakarya][more]
gi|635358688|emb|CCI11490.1|4.216e-2745.79unnamed protein product [Albugo candida][more]
gi|301121576|ref|XP_002908515.1|1.111e-2648.62transmembrane protein, putative [Phytophthora infe... [more]
gi|695405829|ref|XP_009523933.1|3.463e-2545.87hypothetical protein PHYSODRAFT_299044 [Phytophtho... [more]
gi|970643975|gb|KUF85013.1|3.297e-2443.13Signal recognition particle 19 kDa protein [Phytop... [more]
gi|675213393|ref|XP_008915581.1|3.874e-2443.13hypothetical protein PPTG_19074, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2822rna2822Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications