rna2821, rna2821 (mRNA) Nannochloropsis gaditana

Overview
Namerna2821
Unique Namerna2821
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1495
Alignment locationCM002459.1:1329246..1330353 -

Link to JBrowse

Properties
Property NameValue
ProductProtease-associated domain, PA
Orig transcript idgnl|cribi|Naga_101134g2.8898.mrna
Orig protein idgnl|cribi|Naga_101134g2.8898
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1329246..1330353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101134g2gene2700Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2821rna2821-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27859.1cds2813Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2821 ID=rna2821|Name=rna2821|organism=Nannochloropsis gaditana|type=mRNA|length=1495bp
GCGAAACGACGGCGAATGGTGTCTGCGTGGAGTGACGGCGAGTCTCCCAC
ACCGTGTCCCTTGGAACGCCTAGATCATGGCCGATGACGGCAGTGGGGCG
GACATTACCATCCCGTCCTTCCTCCTCTACAAGCCTGACGCGGATGCGAT
CAAGGAGAAGCTGCGACAGGAGTCGCTTGTGCAGGTGGAGATGACTTGGT
CCCTACCCACCCCGGACGACCGCGTCGAGTGGAGCCTGTGGACGTCGGCA
AACGACTCCTCCTCCGCGGCTCTCAAGGAGGAGTTCAAGGAGGCGATGGC
CGCCCTGGGCCAGCACCAGTACTTCACTCCCTACTACCAGGTCTACGACG
GTGCCGCCTACAATTGCGTGAACTTCCCGGACCACTGCGGCTCCCTCTGC
ACGAACCACGGCCGCTACTGCATGCCGGATCCAGACAAGGACCCCTACCA
CGGCTACTCGGGGAGGGACATCGTCATCGAGAACCTCCGGCAAAAGTGTA
TCTGGAACCACTACGGCGGCGAGAACACGGGGAAGGAGGAAGGGGTGGGC
CTTCCCTGGTGGGGCTATGTGCGGGAGTTCACGGAGAAGTGCAGCCGGCG
TTCGCGCTTCACGGATCCGAACTGCATCAAGGAGGCGATGGGCGCGGCGG
GCGTGGACCACAAGAAGATCGAGGCCTGCATGGAGGACGCGGGGGGGGTG
GACCAAGACAGGGAGAACCTGATCCTGCAGGCAGAGCTCTCGGAGAAACT
CAAGAAGAGCATCGTCATCGTCCCCTCCGTCTACGTCAACAACGTCGTGC
AGCGAGGTGGCATCTCCTCCGTAACCGTCCTCTCCTCAATATGCGCCGGG
TATCTAGAGGGGACCCAACCTAAGGTGTGCAACTGCGTGGGCGTGGCCCC
CGACCAGGTCATGACCTGCGTCCAAGGCGGTGACTACCGGCCCGTCTCAC
AAAAGATGGGCGGAAGCGGCGGGGGCGTGTCCTGGGGCGGTGTGCTCGGC
ATTGTCACATTGGTGATCTTGGGCATGACGGCAGCGGGCTTCGTGTATTG
GAAGCGGACACAGGAACAGATGCGCGAGCAAGTCCGTTCCATCTTAGCCG
AGTACATGCCTCTTGAAGACGCACCGGGGGATAGTAATCCATCCACCACG
GCTGGCGGTGGGAGTGTTGATTCTTTCTCGGGTTCAAGAGCGAATAGCAG
GTACTACGACCTGCAGCCTATGAAGGCTACCGGTGGAAGCGGGATTAATG
GAGACACAGCTGCCGTCGCAGCGAAGCGCTTTTACTGTATAAAGCGGGAG
AGAACAGCAATGGGACAAGTCGAGAAGGAATCCGGGGATGAGCATAGAAG
GCGAGTGCCACGTTCACGCAGAGTGGGAGGCACGGCTGTCAAAAAGACGG
ATATGAAGGAGGAAAAGGTGGAAGTGGTGCGTGGCAAAGATGAAAGAATT
CTTGAGGAAAGAATTAACAACAATGCGCAGCAACAAAAAGCGTGA
back to top

protein sequence of rna2821

>rna2821-protein ID=rna2821-protein|Name=rna2821|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLP
ISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFG
IPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTK
VRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR
back to top

mRNA from alignment at CM002459.1:1329246..1330353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2821 ID=rna2821|Name=rna2821|organism=Nannochloropsis gaditana|type=mRNA|length=1108bp|location=Sequence derived from alignment at CM002459.1:1329246..1330353- (Nannochloropsis gaditana)
CCTTTTTTTCCCGACAGAAAGAAGCAGGAGGGACAGCATGCTCTTCCCAA
GAGGGACTCACTGTCTGTCCTGCAGAAAGCGTGGGTTTTATATCGGACGC
CTATTCTCCGTGCTGGCATTCGCCTCCTTGGCGGCGCCCTCCCTTGCCCG
TCCGCGCCACCATGTGGAATACGTGCCATCTTTGCCCATTTCGAGTGGTA
ACGCCGTCGTGAGCAATGCCATGGGTGTGATGGAAGGCGCTGGTGGAATC
GAGGACGAAACCAGTCGACTGCAGAGTACGTTTGATGAAGGAGGAGGCAT
TTGCAGGAAGGAGGAAGAAGAGAGAGACAGCGGGCTCGGCCTAGGAAGCG
GGGGCATACACGCACATGAATAGAGAATAAGGCATCTGAGGGACGCGTCG
CAAGAAGGGACTCACCAATTCTCCACCCTGACCCCTCTCCGATCCTCCCA
GTCCAAATCCCTCGCGACCTGTTCAAACCTGACGGCTACAACCACAAGGA
GGCGCTCTTTGGGATCCCGGTCTACGGGTGCGGGGGGGTGCGGGGGAGGG
CGGAGCCAAGGGTCTAGATCAGAGACTCACATTGCCAGGCGCTTGAAACG
TGGTGCTCAACCCCCCTCCCCCTTCCTCCTTCCCGCTTCCTCCTCCCCCT
CCCTCCCCCCTAAACCCCTCCCCTCTCAACAGCGGCTTCATTGCGGAGAA
GCTTTACTACGCCAATACCACCAAAATGTGCTCTGCGCCCACAGCCGACG
AGGTGGCGCAGTGGAAGAGTCCTTATATTCTCATGGTGGACCGCGGGGAC
TGCACCTTTGTCACTAAGGTCCTGCGCCCCCCCACGACTTTTCACCTCTC
ATTTCCCGCCCTCCCCTTGTCGACTCCTGTTTCTTCTCCGCCTGATCCTT
CTTCAATTTTCGAGTTTCTACCACAAACTTCTGGTGCCCGCCCTTTGCCT
GTTCTCACAACCCCCCTCTCCCTCCTCCCCCAGGTCCGGCACGCCCAGCA
CGCTGGGGCCTCCGGCGTTCTGGTCGCAGACAACTTGTGCGTCTGCAAGG
ACCTCGCCTGCCACCCCGACCCTGACACCTCCTGCCAGGGCATTGAGCCG
GTGCGTTT
back to top

Coding sequence (CDS) from alignment at CM002459.1:1329246..1330353-

>rna2821 ID=rna2821|Name=rna2821|organism=Nannochloropsis gaditana|type=CDS|length=2300bp|location=Sequence derived from alignment at CM002459.1:1329246..1330353- (Nannochloropsis gaditana)
GTCCGGCACGCCCAGCACGCTGGGGCCTCCGGCGTTCTGGTCGCAGACAA
CTTGTGCGTCTGCAAGGACCTCGCCTGCCACCCCGACCCTGACACCTCCT
GCCAGGGCATTGAGCCGGTGCGTTTCGGCTTCATTGCGGAGAAGCTTTAC
TACGCCAATACCACCAAAATGTGCTCTGCGCCCACAGCCGACGAGGTGGC
GCAGTGGAAGAGTCCTTATATTCTCATGGTGGACCGCGGGGACTGCACCT
TTGTCACTAAGTCCAAATCCCTCGCGACCTGTTCAAACCTGACGGCTACA
ACCACAAGGAGGCGCTCTTTGGGATCCCGGTCTACGGATGCTCTTCCCAA
GAGGGACTCACTGTCTGTCCTGCAGAAAGCGTGGGTTTTATATCGGACGC
CTATTCTCCGTGCTGGCATTCGCCTCCTTGGCGGCGCCCTCCCTTGCCCG
TCCGCGCCACCATGTGGAATACGTGCCATCTTTGCCCATTTCGAGTGGTA
ACGCCGTCGTGAGCAATGCCATGGGTGTGATGGAAGGCGCTGGTGGAATC
GAGGACGAAACCAGTCGACTGCAGAGTCCGGCACGCCCAGCACGCTGGGG
CCTCCGGCGTTCTGGTCGCAGACAACTTGTGCGTCTGCAAGGACCTCGCC
TGCCACCCCGACCCTGACACCTCCTGCCAGGGCATTGAGCCGGTGCGTTT
CGGCTTCATTGCGGAGAAGCTTTACTACGCCAATACCACCAAAATGTGCT
CTGCGCCCACAGCCGACGAGGTGGCGCAGTGGAAGAGTCCTTATATTCTC
ATGGTGGACCGCGGGGACTGCACCTTTGTCACTAAGTCCAAATCCCTCGC
GACCTGTTCAAACCTGACGGCTACAACCACAAGGAGGCGCTCTTTGGGAT
CCCGGTCTACGGATGCTCTTCCCAAGAGGGACTCACTGTCTGTCCTGCAG
AAAGCGTGGGTTTTATATCGGACGCCTATTCTCCGTGCTGGCATTCGCCT
CCTTGGCGGCGCCCTCCCTTGCCCGTCCGCGCCACCATGTGGAATACGTG
CCATCTTTGCCCATTTCGAGTGGTAACGCCGTCGTGAGCAATGCCATGGG
TGTGATGGAAGGCGCTGGTGGAATCGAGGACGAAACCAGTCGACTGCAGA
GTCCGGCACGCCCAGCACGCTGGGGCCTCCGGCGTTCTGGTCGCAGACAA
CTTGTGCGTCTGCAAGGACCTCGCCTGCCACCCCGACCCTGACACCTCCT
GCCAGGGCATTGAGCCGGTGCGTTTCGGCTTCATTGCGGAGAAGCTTTAC
TACGCCAATACCACCAAAATGTGCTCTGCGCCCACAGCCGACGAGGTGGC
GCAGTGGAAGAGTCCTTATATTCTCATGGTGGACCGCGGGGACTGCACCT
TTGTCACTAAGTCCAAATCCCTCGCGACCTGTTCAAACCTGACGGCTACA
ACCACAAGGAGGCGCTCTTTGGGATCCCGGTCTACGGATGCTCTTCCCAA
GAGGGACTCACTGTCTGTCCTGCAGAAAGCGTGGGTTTTATATCGGACGC
CTATTCTCCGTGCTGGCATTCGCCTCCTTGGCGGCGCCCTCCCTTGCCCG
TCCGCGCCACCATGTGGAATACGTGCCATCTTTGCCCATTTCGAGTGGTA
ACGCCGTCGTGAGCAATGCCATGGGTGTGATGGAAGGCGCTGGTGGAATC
GAGGACGAAACCAGTCGACTGCAGAGTCCGGCACGCCCAGCACGCTGGGG
CCTCCGGCGTTCTGGTCGCAGACAACTTGTGCGTCTGCAAGGACCTCGCC
TGCCACCCCGACCCTGACACCTCCTGCCAGGGCATTGAGCCGGTGCGTTT
CGGCTTCATTGCGGAGAAGCTTTACTACGCCAATACCACCAAAATGTGCT
CTGCGCCCACAGCCGACGAGGTGGCGCAGTGGAAGAGTCCTTATATTCTC
ATGGTGGACCGCGGGGACTGCACCTTTGTCACTAAGTCCAAATCCCTCGC
GACCTGTTCAAACCTGACGGCTACAACCACAAGGAGGCGCTCTTTGGGAT
CCCGGTCTACGGATGCTCTTCCCAAGAGGGACTCACTGTCTGTCCTGCAG
AAAGCGTGGGTTTTATATCGGACGCCTATTCTCCGTGCTGGCATTCGCCT
CCTTGGCGGCGCCCTCCCTTGCCCGTCCGCGCCACCATGTGGAATACGTG
CCATCTTTGCCCATTTCGAGTGGTAACGCCGTCGTGAGCAATGCCATGGG
TGTGATGGAAGGCGCTGGTGGAATCGAGGACGAAACCAGTCGACTGCAGA
back to top
Synonyms
Publications