EWM27859.1, cds2813 (CDS) Nannochloropsis gaditana

Overview
NameEWM27859.1
Unique Namecds2813
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1330079..1330316 -
Alignment locationCM002459.1:1329827..1329902 -
Alignment locationCM002459.1:1329536..1329671 -
Alignment locationCM002459.1:1329246..1329370 -

Link to JBrowse

Properties
Property NameValue
Start range1329246
Start range.
Protein idEWM27859.1
ProductProtease-associated domain, PA
Partialtrue
Orig transcript idgnl|cribi|Naga_101134g2.8898.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1330079..1330316 -
CM002459.1supercontigCM002459.1:1329827..1329902 -
CM002459.1supercontigCM002459.1:1329536..1329671 -
CM002459.1supercontigCM002459.1:1329246..1329370 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003137Protease-assoc_domain
Homology
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|585110187|gb|EWM27859.1| (Protease-associated domain, PA, partial [Nannochloropsis gaditana])

HSP 1 Score: 400.208 bits (1027), Expect = 2.835e-141
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLPISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR 191
            MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLPISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR
Sbjct:    1 MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLPISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR 191          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|397621843|gb|EJK66490.1| (hypothetical protein THAOC_12589 [Thalassiosira oceanica])

HSP 1 Score: 128.257 bits (321), Expect = 2.102e-31
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 0
Query:   75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTAD--------------EVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLAC-HPDPDTSCQGIEPV 190
            +SRLQ+ +P  LF+PDGY+H+EALFG+P YGG IA+ ++YA++  +C  PT D              ++  W SPYILMVDRG C+FV KVR+AQ +GA+GV++ADN C+C D  C   + +  CQ  EP+
Sbjct:   29 SSRLQVHVPHTLFRPDGYDHREALFGVPPYGGSIAQSIFYADS-DLCD-PTVDTRKGYPIRSKDSKGKMEPWPSPYILMVDRGGCSFVQKVRNAQRSGAAGVVIADNTCLCSDTNCVSANGEDVCQPAEPI 157          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1072229267|gb|OEU14002.1| (hypothetical protein FRACYDRAFT_171314 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 127.872 bits (320), Expect = 3.066e-31
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 0
Query:   56 AVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN---------TTKMCSAPTADE----VAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDT-SCQGIEPV 190
            A++   + V   A   ++ +SRL I IP  LFK +GY+H+EALFGIP YGG IA+ +YYA+         TTK       D+    +  W+SPYILMV+RG+CTFV KVR+AQ +GA+GV++ADN C+C D+ C    D  +C+  EP+
Sbjct:    8 ALIPFLLSVAVQAATPDNVSSRLMIHIPHSLFKEEGYDHREALFGIPPYGGSIAQNVYYADDDLCDPNVDTTKGYPRREKDDKTGKMPAWESPYILMVNRGECTFVKKVRNAQRSGAAGVIIADNTCLCSDVECIEAADNPTCETSEPI 156          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210518225|dbj|GAX22837.1| (hypothetical protein FisN_24Lh120 [Fistulifera solaris])

HSP 1 Score: 127.872 bits (320), Expect = 3.827e-31
Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 0
Query:   75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN---------TTKMCSAPTADEVAQ--WKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTS-CQGIEPV 190
            +S+L +QIP+ L K  GY+H+EALFG+P YGG IA+++YYA+         T K       D+  Q  W+SPYILMVDRG CTFV KVR+AQ AGA+GVL+ADN C+C DL C      S C+  EP+
Sbjct:   27 SSKLTVQIPQRLNKEGGYDHREALFGMPPYGGSIAQQVYYADADLCDSDVDTRKGYPQKKGDDGQQLPWESPYILMVDRGGCTFVQKVRNAQKAGAAGVLIADNTCLCSDLDCKSKTGISTCENSEPI 154          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|224010355|ref|XP_002294135.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970152|gb|EED88490.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 127.102 bits (318), Expect = 6.447e-31
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 0
Query:   62 MGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTAD--------------EVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLAC-HPDPDTSCQGIEPV 190
            +GV  G    ++ +SRLQ+ +P+ LF+P+GY+H+EALFG+P YGG IA+ +YYA  + +C  PT D              ++  W SPYILMVDRG C+FV KVR+AQ +GA+GV++ADN C+C D  C   +    CQ  EP+
Sbjct:   13 LGVANGDSA-DNVSSRLQVHVPQTLFRPEGYDHREALFGVPPYGGSIAQSVYYA-ASDLCD-PTVDTRGGYPIRAKDNTGKMEPWPSPYILMVDRGGCSFVQKVRNAQRSGAAGVVIADNTCLCSDKDCVSANGQDVCQPAEPI 153          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|299473335|emb|CBN77734.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 126.716 bits (317), Expect = 8.972e-31
Identity = 69/144 (47.92%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   60 NAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN--------TTKMCSAPTADEVAQ--WKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLA---CHPDPDTSCQGIEPV 190
            +A+G  E A   E   SRLQ  IP  L++ +GY H+EALFGIP YGG IAE++ +          T  +CS     +V      SP+ILMVDRGDCTF +KVR AQH GA GV++ADN C+CKD A   C+   DT C+ +EP+
Sbjct:   17 SAIGWREAAA--ESSGSRLQFTIPSVLYRDEGYAHEEALFGIPKYGGTIAERIVHGGVDPGQSVRTWTLCSDDDVKDVPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGICNKSGDTPCEQVEPI 158          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|397563266|gb|EJK43726.1| (hypothetical protein THAOC_37793 [Thalassiosira oceanica])

HSP 1 Score: 125.176 bits (313), Expect = 3.959e-30
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query:   75 TSRLQIQIPRDLFKPDG-YNHKEALFGIPVYGGFIAEKLYYANTTKMCSAP-------------TADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCK-DLACHPDPDTSCQGIEPV 190
            +S+LQI +P+ L K  G Y H+EALFGIP YGG IA++LYYA+ T   + P              + E+  W+SPYILMVDRG CTFV KVR+AQ  GA+GV++ADN C+C     CH DP   C+  EP+
Sbjct:   41 SSKLQIHVPKTLTKAGGGYAHREALFGIPPYGGSIAQQLYYADDTLCENKPGVTRGGYPIRAKDESGEMMPWQSPYILMVDRGGCTFVQKVRNAQRVGAAGVIIADNTCLCSAGDQCHSDPGRDCEEREPI 171          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210528901|dbj|GAX12544.1| (hypothetical protein FisN_24Hh120 [Fistulifera solaris])

HSP 1 Score: 122.094 bits (305), Expect = 3.943e-29
Identity = 64/125 (51.20%), Postives = 81/125 (64.80%), Query Frame = 0
Query:   78 LQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN---------TTKMCSAPTADEVAQ--WKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTS-CQGIEPV 190
            +  QIP+ L K  GY+H+EALFG+P YGG IA+++YYA+         T K       D+  Q  W+SPYILMVDRG CTFV KVR+AQ AGA+GVL+ADN C+C DL C      S C+  EP+
Sbjct:   11 ISYQIPQRLNKEGGYDHREALFGMPPYGGSIAQQVYYADSDLCDSDVDTRKGYPQKKGDDGQQLPWESPYILMVDRGGCTFVQKVRNAQKAGAAGVLIADNTCLCSDLDCKSKTGISTCENSEPI 135          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210528902|dbj|GAX12545.1| (hypothetical protein FisN_24Hh121 [Fistulifera solaris])

HSP 1 Score: 120.939 bits (302), Expect = 1.297e-28
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 0
Query:   75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADE--------------VAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDP-DTSCQGIEP 189
            TS LQ+ IP+ L KPDGY+H++ALFGIP YGG IA+++YYA+   +CS P  D+                 W +P+ILM+DRG+C FV KVR+AQ AGAS VL+AD  C C D  C  +  D +C+  EP
Sbjct:   27 TSFLQVHIPQKLSKPDGYDHRDALFGIPPYGGSIAQQVYYADA-DLCS-PQVDKRRGYPERNRDSNGNQEPWPAPFILMIDRGNCDFVEKVRNAQRAGASAVLIADTSCRCADDICMNETGDVTCEATEP 154          
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210518226|dbj|GAX22838.1| (hypothetical protein FisN_24Lh121 [Fistulifera solaris])

HSP 1 Score: 120.168 bits (300), Expect = 2.074e-28
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 0
Query:   75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADE--------------VAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDP-DTSCQGIEP 189
            TS LQ+ IP+ L KPDGY+H++ALFGIP YGG IA+++YYA+   +CS P  D+                 W +P+ILM+DRG+C FV KVR+AQ AGAS VL+AD  C C D  C  +  D +C+  EP
Sbjct:   27 TSFLQVHIPQKLSKPDGYDHRDALFGIPPYGGSIAQQVYYADA-DLCS-PQVDKRRGYPERNRDSDGNQEPWPAPFILMIDRGNCDFVEKVRNAQRAGASAVLIADTSCRCADDICMNETGDLTCEATEP 154          
The following BLAST results are available for this feature:
BLAST of EWM27859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110187|gb|EWM27859.1|2.835e-141100.00Protease-associated domain, PA, partial [Nannochlo... [more]
gi|397621843|gb|EJK66490.1|2.102e-3148.09hypothetical protein THAOC_12589 [Thalassiosira oc... [more]
gi|1072229267|gb|OEU14002.1|3.066e-3145.64hypothetical protein FRACYDRAFT_171314 [Fragilario... [more]
gi|1210518225|dbj|GAX22837.1|3.827e-3151.56hypothetical protein FisN_24Lh120 [Fistulifera sol... [more]
gi|224010355|ref|XP_002294135.1|6.447e-3145.83predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299473335|emb|CBN77734.1|8.972e-3147.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|397563266|gb|EJK43726.1|3.959e-3049.62hypothetical protein THAOC_37793 [Thalassiosira oc... [more]
gi|1210528901|dbj|GAX12544.1|3.943e-2951.20hypothetical protein FisN_24Hh120 [Fistulifera sol... [more]
gi|1210528902|dbj|GAX12545.1|1.297e-2848.46hypothetical protein FisN_24Hh121 [Fistulifera sol... [more]
gi|1210518226|dbj|GAX22838.1|2.074e-2848.46hypothetical protein FisN_24Lh121 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2821rna2821Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications