EWM27859.1, cds2813 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|585110187|gb|EWM27859.1| (Protease-associated domain, PA, partial [Nannochloropsis gaditana]) HSP 1 Score: 400.208 bits (1027), Expect = 2.835e-141 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query: 1 MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLPISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR 191
MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLPISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR
Sbjct: 1 MLFPRGTHCLSCRKRGFYIGRLFSVLAFASLAAPSLARPRHHVEYVPSLPISSGNAVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTSCQGIEPVR 191
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|397621843|gb|EJK66490.1| (hypothetical protein THAOC_12589 [Thalassiosira oceanica]) HSP 1 Score: 128.257 bits (321), Expect = 2.102e-31 Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 0
Query: 75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTAD--------------EVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLAC-HPDPDTSCQGIEPV 190
+SRLQ+ +P LF+PDGY+H+EALFG+P YGG IA+ ++YA++ +C PT D ++ W SPYILMVDRG C+FV KVR+AQ +GA+GV++ADN C+C D C + + CQ EP+
Sbjct: 29 SSRLQVHVPHTLFRPDGYDHREALFGVPPYGGSIAQSIFYADS-DLCD-PTVDTRKGYPIRSKDSKGKMEPWPSPYILMVDRGGCSFVQKVRNAQRSGAAGVVIADNTCLCSDTNCVSANGEDVCQPAEPI 157
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1072229267|gb|OEU14002.1| (hypothetical protein FRACYDRAFT_171314 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 127.872 bits (320), Expect = 3.066e-31 Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 0
Query: 56 AVVSNAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN---------TTKMCSAPTADE----VAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDT-SCQGIEPV 190
A++ + V A ++ +SRL I IP LFK +GY+H+EALFGIP YGG IA+ +YYA+ TTK D+ + W+SPYILMV+RG+CTFV KVR+AQ +GA+GV++ADN C+C D+ C D +C+ EP+
Sbjct: 8 ALIPFLLSVAVQAATPDNVSSRLMIHIPHSLFKEEGYDHREALFGIPPYGGSIAQNVYYADDDLCDPNVDTTKGYPRREKDDKTGKMPAWESPYILMVNRGECTFVKKVRNAQRSGAAGVIIADNTCLCSDVECIEAADNPTCETSEPI 156
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210518225|dbj|GAX22837.1| (hypothetical protein FisN_24Lh120 [Fistulifera solaris]) HSP 1 Score: 127.872 bits (320), Expect = 3.827e-31 Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 0
Query: 75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN---------TTKMCSAPTADEVAQ--WKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTS-CQGIEPV 190
+S+L +QIP+ L K GY+H+EALFG+P YGG IA+++YYA+ T K D+ Q W+SPYILMVDRG CTFV KVR+AQ AGA+GVL+ADN C+C DL C S C+ EP+
Sbjct: 27 SSKLTVQIPQRLNKEGGYDHREALFGMPPYGGSIAQQVYYADADLCDSDVDTRKGYPQKKGDDGQQLPWESPYILMVDRGGCTFVQKVRNAQKAGAAGVLIADNTCLCSDLDCKSKTGISTCENSEPI 154
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|224010355|ref|XP_002294135.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970152|gb|EED88490.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 127.102 bits (318), Expect = 6.447e-31 Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 0
Query: 62 MGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTAD--------------EVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLAC-HPDPDTSCQGIEPV 190
+GV G ++ +SRLQ+ +P+ LF+P+GY+H+EALFG+P YGG IA+ +YYA + +C PT D ++ W SPYILMVDRG C+FV KVR+AQ +GA+GV++ADN C+C D C + CQ EP+
Sbjct: 13 LGVANGDSA-DNVSSRLQVHVPQTLFRPEGYDHREALFGVPPYGGSIAQSVYYA-ASDLCD-PTVDTRGGYPIRAKDNTGKMEPWPSPYILMVDRGGCSFVQKVRNAQRSGAAGVVIADNTCLCSDKDCVSANGQDVCQPAEPI 153
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|299473335|emb|CBN77734.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 126.716 bits (317), Expect = 8.972e-31 Identity = 69/144 (47.92%), Postives = 89/144 (61.81%), Query Frame = 0
Query: 60 NAMGVMEGAGGIEDETSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN--------TTKMCSAPTADEVAQ--WKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLA---CHPDPDTSCQGIEPV 190
+A+G E A E SRLQ IP L++ +GY H+EALFGIP YGG IAE++ + T +CS +V SP+ILMVDRGDCTF +KVR AQH GA GV++ADN C+CKD A C+ DT C+ +EP+
Sbjct: 17 SAIGWREAAA--ESSGSRLQFTIPSVLYRDEGYAHEEALFGIPKYGGTIAERIVHGGVDPGQSVRTWTLCSDDDVKDVPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGICNKSGDTPCEQVEPI 158
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|397563266|gb|EJK43726.1| (hypothetical protein THAOC_37793 [Thalassiosira oceanica]) HSP 1 Score: 125.176 bits (313), Expect = 3.959e-30 Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query: 75 TSRLQIQIPRDLFKPDG-YNHKEALFGIPVYGGFIAEKLYYANTTKMCSAP-------------TADEVAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCK-DLACHPDPDTSCQGIEPV 190
+S+LQI +P+ L K G Y H+EALFGIP YGG IA++LYYA+ T + P + E+ W+SPYILMVDRG CTFV KVR+AQ GA+GV++ADN C+C CH DP C+ EP+
Sbjct: 41 SSKLQIHVPKTLTKAGGGYAHREALFGIPPYGGSIAQQLYYADDTLCENKPGVTRGGYPIRAKDESGEMMPWQSPYILMVDRGGCTFVQKVRNAQRVGAAGVIIADNTCLCSAGDQCHSDPGRDCEEREPI 171
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210528901|dbj|GAX12544.1| (hypothetical protein FisN_24Hh120 [Fistulifera solaris]) HSP 1 Score: 122.094 bits (305), Expect = 3.943e-29 Identity = 64/125 (51.20%), Postives = 81/125 (64.80%), Query Frame = 0
Query: 78 LQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYAN---------TTKMCSAPTADEVAQ--WKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDPDTS-CQGIEPV 190
+ QIP+ L K GY+H+EALFG+P YGG IA+++YYA+ T K D+ Q W+SPYILMVDRG CTFV KVR+AQ AGA+GVL+ADN C+C DL C S C+ EP+
Sbjct: 11 ISYQIPQRLNKEGGYDHREALFGMPPYGGSIAQQVYYADSDLCDSDVDTRKGYPQKKGDDGQQLPWESPYILMVDRGGCTFVQKVRNAQKAGAAGVLIADNTCLCSDLDCKSKTGISTCENSEPI 135
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210528902|dbj|GAX12545.1| (hypothetical protein FisN_24Hh121 [Fistulifera solaris]) HSP 1 Score: 120.939 bits (302), Expect = 1.297e-28 Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 0
Query: 75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADE--------------VAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDP-DTSCQGIEP 189
TS LQ+ IP+ L KPDGY+H++ALFGIP YGG IA+++YYA+ +CS P D+ W +P+ILM+DRG+C FV KVR+AQ AGAS VL+AD C C D C + D +C+ EP
Sbjct: 27 TSFLQVHIPQKLSKPDGYDHRDALFGIPPYGGSIAQQVYYADA-DLCS-PQVDKRRGYPERNRDSNGNQEPWPAPFILMIDRGNCDFVEKVRNAQRAGASAVLIADTSCRCADDICMNETGDVTCEATEP 154
BLAST of EWM27859.1 vs. NCBI_GenBank
Match: gi|1210518226|dbj|GAX22838.1| (hypothetical protein FisN_24Lh121 [Fistulifera solaris]) HSP 1 Score: 120.168 bits (300), Expect = 2.074e-28 Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 0
Query: 75 TSRLQIQIPRDLFKPDGYNHKEALFGIPVYGGFIAEKLYYANTTKMCSAPTADE--------------VAQWKSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLACHPDP-DTSCQGIEP 189
TS LQ+ IP+ L KPDGY+H++ALFGIP YGG IA+++YYA+ +CS P D+ W +P+ILM+DRG+C FV KVR+AQ AGAS VL+AD C C D C + D +C+ EP
Sbjct: 27 TSFLQVHIPQKLSKPDGYDHRDALFGIPPYGGSIAQQVYYADA-DLCS-PQVDKRRGYPERNRDSDGNQEPWPAPFILMIDRGNCDFVEKVRNAQRAGASAVLIADTSCRCADDICMNETGDLTCEATEP 154 The following BLAST results are available for this feature:
BLAST of EWM27859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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