rna2814, rna2814 (mRNA) Nannochloropsis gaditana

Overview
Namerna2814
Unique Namerna2814
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1890
Alignment locationCM002459.1:1301157..1302367 -

Link to JBrowse

Properties
Property NameValue
Productpeptide methionine sulfoxide reductase
Orig transcript idgnl|cribi|Naga_100094g2.6809.mrna
Orig protein idgnl|cribi|Naga_100094g2.6809
GeneMSRA
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1301157..1302367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSRAgene2694Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2814rna2814-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27874.1cds2806Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2814 ID=rna2814|Name=rna2814|organism=Nannochloropsis gaditana|type=mRNA|length=1890bp
ATGAGTGCACAGTTGCTCGACCACCAGGGAAAAGACGGGAAATCCTACGG
GGCGGTGGCTATCTCCTCGCCGCGCGTCGATCTCAACAGCAAGGAACTGT
CTTGGCAACCTTCTATTCGTGACTTACCCGCGGCTCGTCCCACGCGAACC
AACAGCTGCGACAACGCTGGCAAGGCATTCACAGCGTCAGGCATGCCTCC
TGTTACACCGGCAGCAGCCTCGCCGCAACGTATTCCACGGACTCACCGCT
CTTGGGTCACTGTTCGTGTTGTCTCGGGCATCATAATGTTTTCGATGATC
GGGAACATAATACGGATCGAACTAGAAAGATACATCATCCAGCTCGATGC
GAGGCAAGGGAATATCAAAAGCTCCATGTATCCCTCCATCCTAGCGAATC
TCCTTGGCTGTTTTATCATGGGTCTCCTCTACGAATGCAGGGGTTTCCTG
GAGAGGCATCTGCACGGCATCCTTTCCTTCCCCAGCATGCCCGACGCTTC
CTCCCTCTACGTGGCCATCACCACCTGGATGTGCGGGAGCATTACCACCT
ACAGTGGATGGAACAGCGTGGTTGCGCATCGCATGGTCTATGACTCCTTC
ACCTATGGTATCTTCAGCGCCATGACCGGTGCTGCCACGGCCTACCTGGC
CTTACTCCATGGCATGGACGTGGGTAGTGGCTTTACCCGCGTCCAACTCG
TCGAGGACACAGACAAGAAAGCCTCGCCTCCCTCCCTCCCTTCCCCCCCC
GCGGACAGCTCCTCCCTCTCCATTTCTGTGGCGTCTCCCCGTCAGTCACC
CTCTGGACTGACACATCTACCATCCGGCCCCCTTCCGGAGGAGGAGGAGG
AGGGAGATTTGCTTGAAAGGGACGAGGAAGCCGCGGCAGAGGAAGAGGAG
AGCAGGAGGAGGATGTGGGGTGCGCGTCGTGGGAAAAGGAAGGAGAGGAG
GAGTGAGGAAGGGAGAGGGACTTCTGGCGGTATGACGTGGTTGACGGCAT
GGCTGGGGCTTAGGAGGGGGAAGGAGGATGGAGGGAGTGAAGAGGAAGAG
GAGGAGGAAGGAGGAGGAGGGGAAGAGCGAAGAAAAGAGGATGGAAAGGT
GCTCTTTGGCCCGCTGCCCGAGGAGTTGGCTGCCTCTGGCGCGGCTTTGA
TGGAACCGCACAGGTATATATCACCGGAGCGAAAGCCGGTGTCACGGCCT
ACCAACTCTGCCTCTTCGGCGTCTAGCTACTCCCGACCGCTGGGGCAACA
GGGGGGAGGGAGGGAGGGAGGGAGCGAGGCAGGGAGAGAGGGAGGAGGCA
TCCAAATGCAGGCCCAGCCTCCAGGGTTCAATCCCACTGAGGACGATGAC
GACGTTGAGTACTCAATCTATAGTTTCCGGAAACCGAACCAACGTGATGC
GTTTATTCTGGGTGAGGTGTCATTTTACACAGCTGGGGCCGCCGGATTGT
TAGCTCTGGCAGCCATCAAAATCAAGACCGTGGAGTCCTCAGAGATGGAA
CCGCGGTGGCTGTCTTGTCTCTTCGCCCCTCTAGGCGCAGCGTTGCGTTA
CGTGCTCGCTTTAGCCATGGCGCAGCATCCGACCATTCACCTTATCCTCC
CTCACTTCCCCCTTCAAACATTTACCGCGAATGTGTTGGGGGCGACTCTT
TCGGCCTTTTTTGATACTATCATTCCTGTCCTCAAGGACAGAGGAGATGG
GAGGACTGCGCATATAATGAAGGCGCTCCTTGTTGGCTTCGATGGATGCT
TGAGCACATATTCTACTTTTGCGCTCGAGCTACACAAACTGCCTACGCAG
CATGCTTGGAAGTATGCCCTCGCCACTTTCATTACGACACAGGCCATTGC
CCAGCTCATCATTGCAAGCCACAGGTGGGGGTGGTGGTGA
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protein sequence of rna2814

>rna2814-protein ID=rna2814-protein|Name=rna2814|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAF
QRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYED
LLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKK
YSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG
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mRNA from alignment at CM002459.1:1301157..1302367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2814 ID=rna2814|Name=rna2814|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp|location=Sequence derived from alignment at CM002459.1:1301157..1302367- (Nannochloropsis gaditana)
CATCATCTATCGTTTGTGACCATATAGCAGACTACTTTCGGAGACGAGGC
TGTGAGATTTACTCTGACGGACAGACCCCTGCCATTTCAGTACTGATTTT
TTTTCGTCCAGGTGATAACATCACTCCTTCAGCATGCGCCATGCTTGGTA
TCAGCAATTGAGCGGCTTAGCACTTGAGGCTAGCAAGGCTGCTCTGGCTG
ATTCCGTCCCTGCACTCTCTGTGGACGGTCACTCTATTGCGACTTTCGCT
GGAGGCTGCTTCTGGGGCATCGAGCTTGCATTTCAGCGTGTTCCAGGTGT
TGTCGCGACTGGAACGGGATACACGCAGGGTCACGTGGCAGAGCCCTCGT
ATCAGGAAGTATGCAGCGGGACAACGGGTCACACAGAGGCCATTCAAGTG
CACTTCAAACCAAACGAAGTCTCGTACGAGGACTTGCTGAAGGTATTCTG
GGAACGCATAGACCCACTGATGGAAAATGGCCAAGGGGGTGACAGAGGTA
AGAGAGGTCACGACTTCTGCCTGACACAGGAGCGCTTGGTGGCAGACCAT
AGAAAAATATCTGGATTTTCCCCGGTGTTGGGAAGCTTGCTCTTCGAAAT
TTTCTGCCACCGTATTTGAGTAGATGAGCGGGATCAGTAGCTAAACCTTT
ACAACAAGGTATAGAAATCGCTAGTCACCGTTTAAACCCTCTTTCATCCT
CTTCCTCTCCTCCTCTTCGAAGGCACGCAATATCGGACGGGCATCTACAC
CCACACAGACGCGCAACACCGAGCTGCCCTACAGAGCCGCGAGATTGAAC
AAAAGAAGTATTCACGGCCCATCATGACGGAAATTAAACCGGCAAAAGTG
TTCTGGCCCGCGGAGGTCAGCCACCAGGGCTACCTGTGGAAAGGAGGGAG
GTTTGGCTCGGCGCAAAGTGCCGCAAAGGGATGCACGGACCCCATCCGTT
GTTATGGCTGAAGAGTGATGTGCGTGACGTGGGAAAAACGAACCGGGCGA
CGAGGATGAGAGAAAAGAAAAGTGAGCCTCAGGACGCCATTACTCAGAAT
TGCGAGGGTACAAGAGACACAAATCTCCTTGCTTCTTGTTTTTGTTGGAT
TGGCCCACTAAGTGTCTGCGTTTTTTTCGCGCAATAACAGCTCAGTCCCG
GGCTTTGATTTCGAATGCATTGTTGTCATCACACATCCACATGCCAGGCG
TCTCTACTCCA
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Coding sequence (CDS) from alignment at CM002459.1:1301157..1302367-

>rna2814 ID=rna2814|Name=rna2814|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002459.1:1301157..1302367- (Nannochloropsis gaditana)
GCACGCAATATCGGACGGGCATCTACACCCACACAGACGCGCAACACCGA
GCTGCCCTACAGAGCCGCGAGATTGAACAAAAGAAGTATTCACGGCCCAT
CATGACGGAAATTAAACCGGCAAAAGTGTTCTGGCCCGCGGAGGTCAGCC
ACCAGGGCTACCTGTGGAAAGGAGGGAGGTTTGGCTCGGCGCAAAGTGCC
GCAAAGGGATGCACGGACCCCATCCGTTGTTATGGCTGAATGCGCCATGC
TTGGTATCAGCAATTGAGCGGCTTAGCACTTGAGGCTAGCAAGGCTGCTC
TGGCTGATTCCGTCCCTGCACTCTCTGTGGACGGTCACTCTATTGCGACT
TTCGCTGGAGGCTGCTTCTGGGGCATCGAGCTTGCATTTCAGCGTGTTCC
AGGTGTTGTCGCGACTGGAACGGGATACACGCAGGGTCACGTGGCAGAGC
CCTCGTATCAGGAAGTATGCAGCGGGACAACGGGTCACACAGAGGCCATT
CAAGTGCACTTCAAACCAAACGAAGTCTCGTACGAGGACTTGCTGAAGGT
ATTCTGGGAACGCATAGACCCACTGATGGAAAATGGCCAAGGGGGTGACA
GAGGCACGCAATATCGGACGGGCATCTACACCCACACAGACGCGCAACAC
CGAGCTGCCCTACAGAGCCGCGAGATTGAACAAAAGAAGTATTCACGGCC
CATCATGACGGAAATTAAACCGGCAAAAGTGTTCTGGCCCGCGGAGGTCA
GCCACCAGGGCTACCTGTGGAAAGGAGGGAGGTTTGGCTCGGCGCAAAGT
GCCGCAAAGGGATGCACGGACCCCATCCGTTGTTATGGCTGAATGCGCCA
TGCTTGGTATCAGCAATTGAGCGGCTTAGCACTTGAGGCTAGCAAGGCTG
CTCTGGCTGATTCCGTCCCTGCACTCTCTGTGGACGGTCACTCTATTGCG
ACTTTCGCTGGAGGCTGCTTCTGGGGCATCGAGCTTGCATTTCAGCGTGT
TCCAGGTGTTGTCGCGACTGGAACGGGATACACGCAGGGTCACGTGGCAG
AGCCCTCGTATCAGGAAGTATGCAGCGGGACAACGGGTCACACAGAGGCC
ATTCAAGTGCACTTCAAACCAAACGAAGTCTCGTACGAGGACTTGCTGAA
GGTATTCTGGGAACGCATAGACCCACTGATGGAAAATGGCCAAGGGGGTG
ACAGAG
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Synonyms
Publications