EWM27874.1, cds2806 (CDS) Nannochloropsis gaditana

Overview
NameEWM27874.1
Unique Namecds2806
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1301871..1302234 -
Alignment locationCM002459.1:1301407..1301645 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27874.1
Productpeptide methionine sulfoxide reductase
Orig transcript idgnl|cribi|Naga_100094g2.6809.mrna
GeneMSRA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1301871..1302234 -
CM002459.1supercontigCM002459.1:1301407..1301645 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009987cellular process
GO:0042221response to chemical
GO:0019538protein metabolic process
GO:0030091protein repair
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0008113peptide-methionine (S)-S-oxide reductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR028427Met_Sox_Rdtase
IPR002569Met_Sox_Rdtase_MsrA
Homology
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|553192018|ref|XP_005855498.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|553195423|ref|XP_005856143.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422292910|gb|EKU20211.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422293556|gb|EKU20856.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|585110204|gb|EWM27874.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 418.313 bits (1074), Expect = 4.151e-148
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG
Sbjct:    1 MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|298708882|emb|CBJ30839.1| (methionine sulfoxide reductase [Ectocarpus siliculosus])

HSP 1 Score: 235.728 bits (600), Expect = 8.136e-75
Identity = 113/179 (63.13%), Postives = 136/179 (75.98%), Query Frame = 0
Query:   21 LADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCY 199
            L   VP+ S  GH IATFAGGCFWG+ELAFQRVPGVVAT  GYTQG V +P+Y EVCSG+TGHTEA+QV++ P+EVS+E+L  VF+ RI+P   NGQGGDRGTQYRTG+Y HT  Q   AL+  +  +  Y +PI TEI+ AKV+WPAE+ HQ YL KGG  G AQ+A KG T+ IRCY
Sbjct:  106 LKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKGQSDVALKVVDGLRGNYKQPIATEIEGAKVYWPAELYHQQYLPKGGPNGMAQNAEKGATETIRCY 284          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|585103174|gb|EWM22611.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 237.269 bits (604), Expect = 2.577e-74
Identity = 115/196 (58.67%), Postives = 140/196 (71.43%), Query Frame = 0
Query:    6 YQQLSGL-ALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            Y  L+G+ A EA++ AL   V   S DG+ IATFAGGCFWG+ELA+QRV GV+ T  GYTQG   +P+Y  VCSG +GHTEA+QV F P EVSYE L K+   RI+P ++N  G DRGTQYR GIY H + Q + A +  E  Q ++S+PI+TE  PA V+WPAE  HQ YL KGGRF + QSAAKGCTDPIRCYG
Sbjct:   81 YSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|168030609|ref|XP_001767815.1| (predicted protein [Physcomitrella patens] >gi|162680897|gb|EDQ67329.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 223.787 bits (569), Expect = 3.728e-71
Identity = 110/178 (61.80%), Postives = 126/178 (70.79%), Query Frame = 0
Query:   23 DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            D VPA    GH  ATF  GCFWG+ELAFQRV GV  T  GYTQGH+  P Y  VCSG TGH+E ++V + P E SY  LL VFW+R DP   N QG DRGTQYR+GIY ++  Q +AAL+S+E  QK  S PI+TEI PAK F+ AE  HQ YL KGGR G+AQS AKGCTDPIRCYG
Sbjct:   30 DDVPA---PGHEFATFGAGCFWGVELAFQRVHGVSHTEVGYTQGHIDNPDYYAVCSGDTGHSEVVRVQYDPKECSYNTLLDVFWKRHDPTTLNRQGNDRGTQYRSGIYFYSPEQEKAALESKEQVQKTLSNPIVTEILPAKKFYRAEEYHQQYLAKGGRGGNAQSPAKGCTDPIRCYG 204          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|1109219865|ref|XP_019184426.1| (PREDICTED: peptide methionine sulfoxide reductase A1-like [Ipomoea nil])

HSP 1 Score: 224.172 bits (570), Expect = 1.102e-70
Identity = 111/205 (54.15%), Postives = 137/205 (66.83%), Query Frame = 0
Query:    2 RHAWYQQLSGLALEASKAALADSVPALSVD------GHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            R +W  +L   A  A+++++ DS  A   D      G   A F  GCFWG+ELAFQRVPGV  T  GYTQGHV  PSY++VC+GTT H+E ++V + P E S+E LL  FW R DP   N QG D GTQYR+GIY +T  Q + A++S+E +QK  +R I+TEI PAK F+ AE  HQ YL KGGRFGS QSA KGC DPIRCYG
Sbjct:   51 RMSWLNKLGFGARSAAESSM-DSAIAQGPDDDAPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGHVHNPSYEDVCTGTTNHSEVVRVQYDPKECSFESLLDAFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKEAIESKEKQQKLLNRQIVTEILPAKKFYRAEEYHQQYLAKGGRFGSKQSAEKGCNDPIRCYG 254          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|697100910|ref|XP_009593414.1| (PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana tomentosiformis] >gi|1025235682|ref|XP_016485295.1| PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana tabacum])

HSP 1 Score: 222.631 bits (566), Expect = 5.056e-70
Identity = 108/209 (51.67%), Postives = 140/209 (66.99%), Query Frame = 0
Query:    2 RHAWYQQL------SGLALEASKAALA----DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            + +W  +L         A+++S +A+A    D +PA    G   A F  GCFWG+ELAFQRVPGV  T  GYTQG++  PSY+++CSGTT H+E ++V + P E +++ LL VFW+R DP   N QG D GTQYR+GIY +T  Q +AAL+SR+ +QK  +R I+TEI PAK F+ AE  HQ YL KGGRFG  QS  KGC DPIRCYG
Sbjct:   52 KMSWLNKLGFGAKTDSTAMDSSSSAIAQGPDDDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPSYEDICSGTTFHSEVVRVQYDPKECNFDTLLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESRDKQQKILNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 257          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|1111033155|ref|XP_019223354.1| (PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana attenuata])

HSP 1 Score: 221.861 bits (564), Expect = 1.027e-69
Identity = 107/209 (51.20%), Postives = 140/209 (66.99%), Query Frame = 0
Query:    2 RHAWYQQL------SGLALEASKAALA----DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            + +W  +L        + +++S +A+A    D +PA    G   A F  GCFWG+ELAFQRVPGV  T  GYTQG++  PSY+++CSGTT H+E ++V + P + S++ LL VFW+R DP   N QG D GTQYR+GIY +T  Q +AAL+SR+ +QK  +R I+TEI PAK F+ AE  HQ YL KGGRFG  QS  KGC DPIRCYG
Sbjct:   52 KMSWLNKLGFGAKTDSIPMDSSSSAIAQGPDDDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPSYEDICSGTTFHSEVVRVQYDPKDCSFDTLLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESRDKQQKILNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 257          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|720008835|ref|XP_010258746.1| (PREDICTED: peptide methionine sulfoxide reductase-like [Nelumbo nucifera])

HSP 1 Score: 219.935 bits (559), Expect = 1.386e-69
Identity = 106/178 (59.55%), Postives = 125/178 (70.22%), Query Frame = 0
Query:   23 DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            D +PA    G   A F  GCFWG+ELAFQRVPGV  T  GY+QGH+  PSY +VCSGTT H+E ++V + PNE SYE+LL+VFW R DP   N QG D G QYR+GIY +T  Q +AA +S E  QK+  R I+TEI PAK F+ AE  HQ YL KGGRFG+ QSA KGC DPIRCYG
Sbjct:   34 DDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGHLHNPSYSDVCSGTTQHSEIVRVQYDPNECSYENLLQVFWARHDPTTLNRQGNDVGRQYRSGIYFYTPDQEKAARESMEQHQKELRREIVTEILPAKKFYRAEEYHQQYLEKGGRFGTKQSAGKGCNDPIRCYG 208          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|1027854717|ref|NP_001312732.1| (peptide methionine sulfoxide reductase A1-like [Nicotiana tabacum] >gi|698481005|ref|XP_009787519.1| PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana sylvestris] >gi|671775198|gb|AII99832.1| peptide methionine sulfoxide reductase-like protein [Nicotiana tabacum])

HSP 1 Score: 221.09 bits (562), Expect = 2.086e-69
Identity = 105/191 (54.97%), Postives = 134/191 (70.16%), Query Frame = 0
Query:   14 LEASKAALA----DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            +++S +A+A    D +PA    G   A F  GCFWG+ELAFQRVPGV  T  GYTQG++  PSY+++CSGTT H+E ++V + P E +++ LL VFW+R DP   N QG D GTQYR+GIY +T  Q +AAL+SR+ +QK  +R I+TEI PAK F+ AE  HQ YL KGGRFG  QS  KGC DPIRCYG
Sbjct:   70 MDSSSSAIAQGPDDDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPSYEDICSGTTFHSEVVRVQYDPKECNFDTLLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESRDKQQKILNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 257          
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|219120358|ref|XP_002180919.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407635|gb|EEC47571.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 218.009 bits (554), Expect = 2.102e-69
Identity = 100/166 (60.24%), Postives = 120/166 (72.29%), Query Frame = 0
Query:   35 IATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
            +ATFAGGCFWG+ELA+QRVPGV  T  GY QG    P+Y +VC+G+TGHTEA+ V++ P+E  YEDLL  F+ER+DP   NGQGGDRG QYRTG+Y HT  Q + A      EQ KY+RP+ +E+K A  FWPAE  HQ YL KGGRF   Q+A KG TD IRCYG
Sbjct:    5 LATFAGGCFWGLELAYQRVPGVEYTAVGYAQGPETNPTYNQVCAGSTGHTEAVMVYYNPDECRYEDLLDTFFERVDPTTVNGQGGDRGKQYRTGVYFHTPEQEQVAQARFAAEQPKYNRPMASELKAAAPFWPAEKYHQQYLEKGGRFNQPQNANKGATDTIRCYG 170          
The following BLAST results are available for this feature:
BLAST of EWM27874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553192018|ref|XP_005855498.1|4.151e-148100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|298708882|emb|CBJ30839.1|8.136e-7563.13methionine sulfoxide reductase [Ectocarpus silicul... [more]
gi|585103174|gb|EWM22611.1|2.577e-7458.67peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|168030609|ref|XP_001767815.1|3.728e-7161.80predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1109219865|ref|XP_019184426.1|1.102e-7054.15PREDICTED: peptide methionine sulfoxide reductase ... [more]
gi|697100910|ref|XP_009593414.1|5.056e-7051.67PREDICTED: peptide methionine sulfoxide reductase ... [more]
gi|1111033155|ref|XP_019223354.1|1.027e-6951.20PREDICTED: peptide methionine sulfoxide reductase ... [more]
gi|720008835|ref|XP_010258746.1|1.386e-6959.55PREDICTED: peptide methionine sulfoxide reductase-... [more]
gi|1027854717|ref|NP_001312732.1|2.086e-6954.97peptide methionine sulfoxide reductase A1-like [Ni... [more]
gi|219120358|ref|XP_002180919.1|2.102e-6960.24predicted protein, partial [Phaeodactylum tricornu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2814rna2814Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications