EWM27874.1, cds2806 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|553192018|ref|XP_005855498.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|553195423|ref|XP_005856143.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422292910|gb|EKU20211.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422293556|gb|EKU20856.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|585110204|gb|EWM27874.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana]) HSP 1 Score: 418.313 bits (1074), Expect = 4.151e-148 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG
Sbjct: 1 MRHAWYQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|298708882|emb|CBJ30839.1| (methionine sulfoxide reductase [Ectocarpus siliculosus]) HSP 1 Score: 235.728 bits (600), Expect = 8.136e-75 Identity = 113/179 (63.13%), Postives = 136/179 (75.98%), Query Frame = 0
Query: 21 LADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCY 199
L VP+ S GH IATFAGGCFWG+ELAFQRVPGVVAT GYTQG V +P+Y EVCSG+TGHTEA+QV++ P+EVS+E+L VF+ RI+P NGQGGDRGTQYRTG+Y HT Q AL+ + + Y +PI TEI+ AKV+WPAE+ HQ YL KGG G AQ+A KG T+ IRCY
Sbjct: 106 LKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKGQSDVALKVVDGLRGNYKQPIATEIEGAKVYWPAELYHQQYLPKGGPNGMAQNAEKGATETIRCY 284
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|585103174|gb|EWM22611.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana]) HSP 1 Score: 237.269 bits (604), Expect = 2.577e-74 Identity = 115/196 (58.67%), Postives = 140/196 (71.43%), Query Frame = 0
Query: 6 YQQLSGL-ALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
Y L+G+ A EA++ AL V S DG+ IATFAGGCFWG+ELA+QRV GV+ T GYTQG +P+Y VCSG +GHTEA+QV F P EVSYE L K+ RI+P ++N G DRGTQYR GIY H + Q + A + E Q ++S+PI+TE PA V+WPAE HQ YL KGGRF + QSAAKGCTDPIRCYG
Sbjct: 81 YSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|168030609|ref|XP_001767815.1| (predicted protein [Physcomitrella patens] >gi|162680897|gb|EDQ67329.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 223.787 bits (569), Expect = 3.728e-71 Identity = 110/178 (61.80%), Postives = 126/178 (70.79%), Query Frame = 0
Query: 23 DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
D VPA GH ATF GCFWG+ELAFQRV GV T GYTQGH+ P Y VCSG TGH+E ++V + P E SY LL VFW+R DP N QG DRGTQYR+GIY ++ Q +AAL+S+E QK S PI+TEI PAK F+ AE HQ YL KGGR G+AQS AKGCTDPIRCYG
Sbjct: 30 DDVPA---PGHEFATFGAGCFWGVELAFQRVHGVSHTEVGYTQGHIDNPDYYAVCSGDTGHSEVVRVQYDPKECSYNTLLDVFWKRHDPTTLNRQGNDRGTQYRSGIYFYSPEQEKAALESKEQVQKTLSNPIVTEILPAKKFYRAEEYHQQYLAKGGRGGNAQSPAKGCTDPIRCYG 204
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|1109219865|ref|XP_019184426.1| (PREDICTED: peptide methionine sulfoxide reductase A1-like [Ipomoea nil]) HSP 1 Score: 224.172 bits (570), Expect = 1.102e-70 Identity = 111/205 (54.15%), Postives = 137/205 (66.83%), Query Frame = 0
Query: 2 RHAWYQQLSGLALEASKAALADSVPALSVD------GHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
R +W +L A A+++++ DS A D G A F GCFWG+ELAFQRVPGV T GYTQGHV PSY++VC+GTT H+E ++V + P E S+E LL FW R DP N QG D GTQYR+GIY +T Q + A++S+E +QK +R I+TEI PAK F+ AE HQ YL KGGRFGS QSA KGC DPIRCYG
Sbjct: 51 RMSWLNKLGFGARSAAESSM-DSAIAQGPDDDAPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGHVHNPSYEDVCTGTTNHSEVVRVQYDPKECSFESLLDAFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKEAIESKEKQQKLLNRQIVTEILPAKKFYRAEEYHQQYLAKGGRFGSKQSAEKGCNDPIRCYG 254
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|697100910|ref|XP_009593414.1| (PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana tomentosiformis] >gi|1025235682|ref|XP_016485295.1| PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana tabacum]) HSP 1 Score: 222.631 bits (566), Expect = 5.056e-70 Identity = 108/209 (51.67%), Postives = 140/209 (66.99%), Query Frame = 0
Query: 2 RHAWYQQL------SGLALEASKAALA----DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
+ +W +L A+++S +A+A D +PA G A F GCFWG+ELAFQRVPGV T GYTQG++ PSY+++CSGTT H+E ++V + P E +++ LL VFW+R DP N QG D GTQYR+GIY +T Q +AAL+SR+ +QK +R I+TEI PAK F+ AE HQ YL KGGRFG QS KGC DPIRCYG
Sbjct: 52 KMSWLNKLGFGAKTDSTAMDSSSSAIAQGPDDDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPSYEDICSGTTFHSEVVRVQYDPKECNFDTLLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESRDKQQKILNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 257
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|1111033155|ref|XP_019223354.1| (PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana attenuata]) HSP 1 Score: 221.861 bits (564), Expect = 1.027e-69 Identity = 107/209 (51.20%), Postives = 140/209 (66.99%), Query Frame = 0
Query: 2 RHAWYQQL------SGLALEASKAALA----DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
+ +W +L + +++S +A+A D +PA G A F GCFWG+ELAFQRVPGV T GYTQG++ PSY+++CSGTT H+E ++V + P + S++ LL VFW+R DP N QG D GTQYR+GIY +T Q +AAL+SR+ +QK +R I+TEI PAK F+ AE HQ YL KGGRFG QS KGC DPIRCYG
Sbjct: 52 KMSWLNKLGFGAKTDSIPMDSSSSAIAQGPDDDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPSYEDICSGTTFHSEVVRVQYDPKDCSFDTLLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESRDKQQKILNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 257
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|720008835|ref|XP_010258746.1| (PREDICTED: peptide methionine sulfoxide reductase-like [Nelumbo nucifera]) HSP 1 Score: 219.935 bits (559), Expect = 1.386e-69 Identity = 106/178 (59.55%), Postives = 125/178 (70.22%), Query Frame = 0
Query: 23 DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
D +PA G A F GCFWG+ELAFQRVPGV T GY+QGH+ PSY +VCSGTT H+E ++V + PNE SYE+LL+VFW R DP N QG D G QYR+GIY +T Q +AA +S E QK+ R I+TEI PAK F+ AE HQ YL KGGRFG+ QSA KGC DPIRCYG
Sbjct: 34 DDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGHLHNPSYSDVCSGTTQHSEIVRVQYDPNECSYENLLQVFWARHDPTTLNRQGNDVGRQYRSGIYFYTPDQEKAARESMEQHQKELRREIVTEILPAKKFYRAEEYHQQYLEKGGRFGTKQSAGKGCNDPIRCYG 208
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|1027854717|ref|NP_001312732.1| (peptide methionine sulfoxide reductase A1-like [Nicotiana tabacum] >gi|698481005|ref|XP_009787519.1| PREDICTED: peptide methionine sulfoxide reductase A1-like [Nicotiana sylvestris] >gi|671775198|gb|AII99832.1| peptide methionine sulfoxide reductase-like protein [Nicotiana tabacum]) HSP 1 Score: 221.09 bits (562), Expect = 2.086e-69 Identity = 105/191 (54.97%), Postives = 134/191 (70.16%), Query Frame = 0
Query: 14 LEASKAALA----DSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
+++S +A+A D +PA G A F GCFWG+ELAFQRVPGV T GYTQG++ PSY+++CSGTT H+E ++V + P E +++ LL VFW+R DP N QG D GTQYR+GIY +T Q +AAL+SR+ +QK +R I+TEI PAK F+ AE HQ YL KGGRFG QS KGC DPIRCYG
Sbjct: 70 MDSSSSAIAQGPDDDIPA---PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGYLHNPSYEDICSGTTFHSEVVRVQYDPKECNFDTLLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAALESRDKQQKILNRNIVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 257
BLAST of EWM27874.1 vs. NCBI_GenBank
Match: gi|219120358|ref|XP_002180919.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407635|gb|EEC47571.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 218.009 bits (554), Expect = 2.102e-69 Identity = 100/166 (60.24%), Postives = 120/166 (72.29%), Query Frame = 0
Query: 35 IATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
+ATFAGGCFWG+ELA+QRVPGV T GY QG P+Y +VC+G+TGHTEA+ V++ P+E YEDLL F+ER+DP NGQGGDRG QYRTG+Y HT Q + A EQ KY+RP+ +E+K A FWPAE HQ YL KGGRF Q+A KG TD IRCYG
Sbjct: 5 LATFAGGCFWGLELAYQRVPGVEYTAVGYAQGPETNPTYNQVCAGSTGHTEAVMVYYNPDECRYEDLLDTFFERVDPTTVNGQGGDRGKQYRTGVYFHTPEQEQVAQARFAAEQPKYNRPMASELKAAAPFWPAEKYHQQYLEKGGRFNQPQNANKGATDTIRCYG 170 The following BLAST results are available for this feature:
BLAST of EWM27874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|