rna2811, rna2811 (mRNA) Nannochloropsis gaditana

Overview
Namerna2811
Unique Namerna2811
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1593
Alignment locationCM002459.1:1293670..1295091 +

Link to JBrowse

Properties
Property NameValue
Productcof-like hydrolase
Orig transcript idgnl|cribi|Naga_100094g5.6805.mrna
Orig protein idgnl|cribi|Naga_100094g5.6805
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1293670..1295091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100094g5gene2691Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2811rna2811-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27870.1cds2803Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2811 ID=rna2811|Name=rna2811|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp
TGATCTGATTCGTTTCACACAATAATCGTGGCGTTTGATCCATCCATTGT
TTGGCATCAAGTAAATCAAATGAATAAGTCTGCTTGTTTTGAATAATCTT
TAATGGGTAATTTCTCAAATATTTATGGAAACCATGAGATAGATTGCCTA
TCTTTTTTGTGTTGTGCTTTAGCAGCTTTTGCAAGGATGTCGTGAGGTTA
AAACGGTAATCGTTCACAAATCCTGATCAAAAATTAAGCTTAGTACAAGT
CGTACGGAATTTCTCCCCTTTGAATTTGATGCCGGCATGTTCCGCTCGAT
AAGTGGATGCTTCAAAATTTACGTCGCTTCACTATGTCTGTAGCAAAGAT
ATCTTGTCACATGATTCGTGTCAGGTAATCATAATGCCATAGTGGTCAGC
AATTTTGCCTTGTGGTCAGTTTGGAGACCATAAGAATCCACTTATTTATC
ACTTCTCTGACTTTCGTCATCCCTTCTCCTCATACCAATGATTTTATGTA
TCAGCCTTTCTTATTTATCAAAGCCGCTTTAAAGATGCGTACATTTTCTC
TCATCACATCTGCCACCGTTCTGCTCTGCGCGAGCGCCGCAACTGAGAAC
CTCCGCGGTTCGGAACGATCCCTTTATGTCGCCACTTATGGAGGCAATGC
TTTCATGGGTAACTACCCCATTGACGCTTGTTTTCACTTCGAGCGGTACC
CTGAAGCTAAATTCTGGGATTGCGATGGGAAAGCCGCCGCTGATTTCTTC
TGCCACAAGGAGGGTTATGCGCGCTCCGTCGGATTCGATCTGACCAATTT
TCGTGGCCTGAAACTCGCTTCCTCCCTTGTCGTTGGCTCGGATAAGGTCG
TGGAGGCGGCGCTTCACGAGCCTGAGCAGAAGGTCATCACCAACGTGCAA
TGCGCCCAAGAGTAAACGAAGCCCCGCTGGTAAGACGGCGGCTACGGGCA
AGGAGAAGACGGGGAATTGAGAATTTAATGTGATGTGAGCAGGACGACTC
TTTAAATGGGTATAAAGGATGGAGGGGATAAAAAATACGTAAATGAAGCG
TGCTGTGAACGCGGGCGCTTCGAGAATGGTAAGCAAATGATGTGGGCGAC
GCACATAGAGCTGTGCTCCGTTTGGAGAACGTTCATTTTCGGAGAAGGGT
GTGTTTATGGGTCTGTATATGGGGGTTCACATTTGTGTGACTAAAATTAA
GGCCGAGCATGACAGACCTTTGGCTCAGCTGGTTGAGAGGCAAAGGAGGC
AAGCTCTGTCGCCTCAATAGTACCCCTACTCGGTGACGCACGCACTGGAG
AAGTGGCAGAGATTCCAGTGATAACTGGTGCCCTCTGCCATCTTTTTAGC
ATGATGACACCATCTCATTGAAACCAGGGTGGCAACATGGCGTTTCAGAC
TATTTGGGCAGTGGAAAGAACCCAACAAATCAAGTGTGCGAAAAAGTATC
TTGCAGAGTGTGGGGAGGATGGATCTGAGGAATTTTTCAAATCTTGCATT
TTTCAGACTCGACACAACCCGTTAGAAGACGGGCTGCATGTCAGGGGGTT
ACTGAAGGGTTTATCAAAATTATAATCGTTTTCGGGTATAAAA
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protein sequence of rna2811

>rna2811-protein ID=rna2811-protein|Name=rna2811|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MHGYMSITIFLTVMMANSSFRAVARTNLHVHVVRSTAWLAHRPSSMRPTD
RLKSSSISSAAPSPFSSASHPYTSPIVLVASDVDGTLLGSSHTISPRTIA
SIRALRKKGILFVPATGKSRGGVRNALGALGEELTSSMATGGVYLQGLIV
YKGGEVIYERMLDPQVALDVMRFARERNVSLIAFNGDRILCEKMDATIAS
VTQQHEPMPVVVSLEAFLLASCHSLGPASAPSSSSTPSVKVSVTTSTSSP
TSTASSVQPPPPVAATAVYASSRTPHSPQAPAPSSSNRTESTSIHKLILL
GPPPLMASLRPALESFLGPRASITKAQDDMLEVLPSGGSKGLGLRKLLEA
LDVPTSRILAIGDQENDLEMLKMAGTAVAMGNAPRHVKAVAGHSTRSNDE
DGAARAFERFCLQELSGLI
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mRNA from alignment at CM002459.1:1293670..1295091+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2811 ID=rna2811|Name=rna2811|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp|location=Sequence derived from alignment at CM002459.1:1293670..1295091+ (Nannochloropsis gaditana)
CACCTGCCTGCAAACACCCTGATCAAGCCGCTTAGaagacctcttcctct
tcttcttgaacCTGATGCATGGATACATGTCTATTACCATTTTCTTAACG
GTTATGATGGCAAACTCTTCTTTTCGGGCTGTTGCTCGTACAAATTTACA
TGTGCATGTCGTAAGATCGACAGCTTGGCTTGCGCATCGTCCATCTTCAA
TGCGCCCTACAGATCGTCTTAAATCATCATCTATTTCGTCCGCGGCACca
tctcccttttcctctgcttcccaTCCATATACATCGCCCATCGTATTGGT
TGCCTCCGACGTGGATGGCACCCTCCTTGGTAGCTCGCACACAATTTCTC
CTCGTACAATTGCTTCCATCCGCGCCCTCCGAAAGAAGGGAATTCTCTTT
GTGCCTGCCACAGGAAAATCCCGTGGGGGGGTTCGAAATGCGCTAGGCGC
GTTGGGTGAGGAGCTCACCTCAAGTATGGCTACAGGCGGGGTCTATCTCC
AAGGTTTGATCGTGTACAAAGGTGGAGAAGTCATTTATGAACGAATGCTA
GATCCCCAAGTCGCGCTGGACGTGATGAGATTCGCACGGGAGAGAAACGT
GTCCCTCATCGCCTTCAATGGAGATCGCATTCTATGTGAGAAGATGGATG
CGACCATTGCGAGCGTTACACAACAACACGAGCCCATGCCGGTGGTTGTC
TCCCTCGAAGCGTTTTTGTTAGCGTCGTGCCACTCCCTCGGCCCGGCTTC
AgccccatcttcctcttcaactcCGTCAGTCAAAGTGTCTGTAACTACGT
CGACTTCCTCTCCTACATCTACGGCCTCTTCTGTACAaccgccccctccc
gtgGCGGCTACAGCAGTGTATGCATCCTCACGAACCCCACATTCGCCGCA
GGCCCCGGCGCCCTCATCATCCAACCGCACAGAAAGCACCAGCATCCATA
AGCTTATTCTtctcggccctcctcccctcatgGCATCCCTTCGGCCTGCC
CTCGAAAGCTTTCTGGGGCCAAGGGCAAGCATCACCAAGGCCCAAGACGA
CATGCTAGAAGTCCTTCCGTCCGGCGGTTCGAAGGGATTGGGACTGAGGA
AGCTGCTGGAAGCTTTAGACGTGCCAACATCCAGAATTCTTGCCATAGGA
GACCAGGAGAATGATTTAGAGATGCTGAagatggcggggacggcggtAGC
CATGGGGAACGCGCCCAGGCACGTGAAGGCAGTTGCGGGTCATAGCACTC
GCTCGAACGACGAGGATggcgccgccagggcctttGAACGATTTTGCTTG
CAGGAATTGTCTGGCTTGATATGAATGATGCTCGAAGCATTGATTGGAAG
CTTTTGTGGTTTGTGTATATTAGCGGGGCAAAAAGACTTGTGTTCTGAAC
atagaaaaagggaaaaagcgTC
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Coding sequence (CDS) from alignment at CM002459.1:1293670..1295091+

>rna2811 ID=rna2811|Name=rna2811|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002459.1:1293670..1295091+ (Nannochloropsis gaditana)
ATGCATGGATACATGTCTATTACCATTTTCTTAACGGTTATGATGGCAAA
CTCTTCTTTTCGGGCTGTTGCTCGTACAAATTTACATGTGCATGTCGTAA
GATCGACAGCTTGGCTTGCGCATCGTCCATCTTCAATGCGCCCTACAGAT
CGTCTTAAATCATCATCTATTTCGTCCGCGGCACcatctcccttttcctc
tgcttcccaTCCATATACATCGCCCATCGTATTGGTTGCCTCCGACGTGG
ATGGCACCCTCCTTGGTAGCTCGCACACAATTTCTCCTCGTACAATTGCT
TCCATCCGCGCCCTCCGAAAGAAGGGAATTCTCTTTGTGCCTGCCACAGG
AAAATCCCGTGGGGGGGTTCGAAATGCGCTAGGCGCGTTGGGTGAGGAGC
TCACCTCAAGTATGGCTACAGGCGGGGTCTATCTCCAAGGTTTGATCGTG
TACAAAGGTGGAGAAGTCATTTATGAACGAATGCTAGATCCCCAAGTCGC
GCTGGACGTGATGAGATTCGCACGGGAGAGAAACGTGTCCCTCATCGCCT
TCAATGGAGATCGCATTCTATGTGAGAAGATGGATGCGACCATTGCGAGC
GTTACACAACAACACGAGCCCATGCCGGTGGTTGTCTCCCTCGAAGCGTT
TTTGTTAGCGTCGTGCCACTCCCTCGGCCCGGCTTCAgccccatcttcct
cttcaactcCGTCAGTCAAAGTGTCTGTAACTACGTCGACTTCCTCTCCT
ACATCTACGGCCTCTTCTGTACAaccgccccctcccgtgGCGGCTACAGC
AGTGTATGCATCCTCACGAACCCCACATTCGCCGCAGGCCCCGGCGCCCT
CATCATCCAACCGCACAGAAAGCACCAGCATCCATAAGCTTATTCTtctc
ggccctcctcccctcatgGCATCCCTTCGGCCTGCCCTCGAAAGCTTTCT
GGGGCCAAGGGCAAGCATCACCAAGGCCCAAGACGACATGCTAGAAGTCC
TTCCGTCCGGCGGTTCGAAGGGATTGGGACTGAGGAAGCTGCTGGAAGCT
TTAGACGTGCCAACATCCAGAATTCTTGCCATAGGAGACCAGGAGAATGA
TTTAGAGATGCTGAagatggcggggacggcggtAGCCATGGGGAACGCGC
CCAGGCACGTGAAGGCAGTTGCGGGTCATAGCACTCGCTCGAACGACGAG
GATggcgccgccagggcctttGAACGATTTTGCTTGCAGGAATTGTCTGG
CTTGATATGA
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Synonyms
Publications