rna2805, rna2805 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2805
Unique Name	rna2805
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	369
Alignment location	CM002459.1:1268219..1269477 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF2870
Orig transcript id	gnl\|cribi\|Naga_100094g12.6806.mrna
Orig protein id	gnl\|cribi\|Naga_100094g12.6806
Gene	FAP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1268219..1269477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
FAP	gene2685	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27871.1	cds2797	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2805	rna2805-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1268219..1269477-
coding sequence from alignment at CM002459.1:1268219..1269477-

mRNA sequence

>rna2805 ID=rna2805|Name=rna2805|organism=Nannochloropsis gaditana|type=mRNA|length=369bp
ATGCACTTCATGAGGCGCAACGGTGTGGCGCGTCGCACTTTCCCTACTAT
TTTTCCGGCCGATACCTTCAGAACTTTTGCCATGAGTGACTTTTTACCGG
GCTTAATATGTCTCCGCACGTTTCATCGGTCTGCAAGACGTTTTGTCTTG
GATACCTCCAATTTGGTTATGTTTTGTTTCCGCACGAGCGATGTTACACT
AGATACACAAGATTTATCAGCAATGCAAATAAACTATCATTTTGAACATA
ATCGATGGGCACAGAAAAAGATAAGCCGCGACCCCGGAAATTTGAGAAAT
ACAGAAATTCTGTGTCCCATGTTTCTGGCATTCCATTCATCACCCGTGGC
ACCACGGGTAGCATACTAG

protein sequence of rna2805

>rna2805-protein ID=rna2805-protein|Name=rna2805|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MVVLHVKRSDGDEFLYETTCETKNEDLIQDLVWVWNARLLLQRLVNMVQS
IPQEPDELGVRSNSSEDITPRKDVLVRVAFDAEAYLGSNSTSQEEKKTGD
DGTLQVNKPKKPQHAMSRTLLQEQLDNFHGAIESASPSVSSPLATSFNQN
VKQSDGTKDVVLAEMSRVIRSGRSPTLLQALSSCEANKANSANNPEQDGS
LSGLDPTTARLWAMGKKFVREKTVGEQLGGCRNEKTKIVVKLAGPGQGPP
VREPVVREEERLAMLAHYFKRQEELKRLAEAEDDEYLHAEWADGKQLQRG
LRGVGDVGAPGIGGVR

mRNA from alignment at CM002459.1:1268219..1269477-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2805 ID=rna2805|Name=rna2805|organism=Nannochloropsis gaditana|type=mRNA|length=1259bp|location=Sequence derived from alignment at CM002459.1:1268219..1269477- (Nannochloropsis gaditana)
ACTTAGTAGGGAAAAAGAATAGCAGGAATTCTGCAAAACCTTTGTCGCCC
TCTGGGACCAACGCCAAAAGTTTACGGAACAAATCTTGGAGGCTTTTTTC
CCCATTTTTTTTGATAATTTTGCCATCTTCTCAACACCAACAGGCTTTGC
GTGACACAGCACAATATAAATTACTTCTTTAATCAGCCATATGGTGGTAC
TTCATGTCAAACGGTCAGATGGAGACGAGTTTTTGTACGAGACTACATGT
GAAACAAAAAATGAAGACCTAATCCAGGACTTGGTATGGGTGTGGAACGC
CCGCCTACTCTTGCAGCGTCTCGTCAATATGGTGCAAAGTATCCCTCAAG
AGCCTGATGAGCTTGGCGTGCGAAGCAACAGTAGCGAGGACATCACACCT
AGAAAGGACGTACTAGTTCGGGTGGCGTTTGATGCGGAAGCGTACTTAGG
CAGTAACAGCACAAGTCAAGAGGAGAAAAAGACTGGAGATGATGGAACTT
TACAGGTAAATAAACCCAAAAAACCACAACACGCTATGTCTCGCACTCTG
CTTCAAGAACAACTGGACAACTTCCATGGCGCTATCGAGTCTGCCTCTCC
TTCGGTCTCGTCTCCCCTGGCGACGTCTTTTAACCAAAACGTGAAACAAA
GCGATGGCACCAAAGACGTGGTATTGGCCGAGATGTCACGTGTAATTAGA
AGTGGAAGGTCTCCAACCCTACTCCAGGCTCTTTCTTCATGTGAGGCGAA
CAAGGCAAATAGTGCTAACAATCCTGAGCAGGATGGGAGCCTTTCGGGTC
TTGACCCCACAACCGCACGACTGTGGGCCATGGGGAAAAAATTCGTGCGT
GAGAAAACAGTTGGAGAACAATTGGGTGGCTGTCGCAATGAGAAGACCAA
GATTGTTGTCAAGCTAGCAGGGCCTGGCCAAGGTCCTCCAGTGCGTGAGC
CCGTAGTCAGGGAGGAAGAGAGGTTGGCAATGTTGGCACACTACTTTAAA
AGGCAAGAGGAGCTGAAAAGACTAGCTGAGGCTGAGGATGACGAATACCT
GCATGCTGAATGGGCGGATGGAAAACAATTGCAGCGGGGTCTGCGGGGTG
TAGGAGACGTCGGAGCGCCTGGCATTGGAGGCGTTCGGTAAGATGATTAG
CGCTTGATGACGACGTATAGAGATACTAAAAAGCTCTCATATAAGTAGAT
CTAGAAGCTGGAAAATGTTAAGATTCTTCAACGGAGAAGCAATCAATCTT
TTTGAGACC

Coding sequence (CDS) from alignment at CM002459.1:1268219..1269477-

>rna2805 ID=rna2805|Name=rna2805|organism=Nannochloropsis gaditana|type=CDS|length=951bp|location=Sequence derived from alignment at CM002459.1:1268219..1269477- (Nannochloropsis gaditana)
ATGGTGGTACTTCATGTCAAACGGTCAGATGGAGACGAGTTTTTGTACGA
GACTACATGTGAAACAAAAAATGAAGACCTAATCCAGGACTTGGTATGGG
TGTGGAACGCCCGCCTACTCTTGCAGCGTCTCGTCAATATGGTGCAAAGT
ATCCCTCAAGAGCCTGATGAGCTTGGCGTGCGAAGCAACAGTAGCGAGGA
CATCACACCTAGAAAGGACGTACTAGTTCGGGTGGCGTTTGATGCGGAAG
CGTACTTAGGCAGTAACAGCACAAGTCAAGAGGAGAAAAAGACTGGAGAT
GATGGAACTTTACAGGTAAATAAACCCAAAAAACCACAACACGCTATGTC
TCGCACTCTGCTTCAAGAACAACTGGACAACTTCCATGGCGCTATCGAGT
CTGCCTCTCCTTCGGTCTCGTCTCCCCTGGCGACGTCTTTTAACCAAAAC
GTGAAACAAAGCGATGGCACCAAAGACGTGGTATTGGCCGAGATGTCACG
TGTAATTAGAAGTGGAAGGTCTCCAACCCTACTCCAGGCTCTTTCTTCAT
GTGAGGCGAACAAGGCAAATAGTGCTAACAATCCTGAGCAGGATGGGAGC
CTTTCGGGTCTTGACCCCACAACCGCACGACTGTGGGCCATGGGGAAAAA
ATTCGTGCGTGAGAAAACAGTTGGAGAACAATTGGGTGGCTGTCGCAATG
AGAAGACCAAGATTGTTGTCAAGCTAGCAGGGCCTGGCCAAGGTCCTCCA
GTGCGTGAGCCCGTAGTCAGGGAGGAAGAGAGGTTGGCAATGTTGGCACA
CTACTTTAAAAGGCAAGAGGAGCTGAAAAGACTAGCTGAGGCTGAGGATG
ACGAATACCTGCATGCTGAATGGGCGGATGGAAAACAATTGCAGCGGGGT
CTGCGGGGTGTAGGAGACGTCGGAGCGCCTGGCATTGGAGGCGTTCGGTA
A

Synonyms

Publications