rna2800, rna2800 (mRNA) Nannochloropsis gaditana

Overview
Namerna2800
Unique Namerna2800
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1722
Alignment locationCM002459.1:1251272..1252820 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100323g2.1692.mrna
Orig protein idgnl|cribi|Naga_100323g2.1692
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1251272..1252820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100323g2gene2680Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27881.1cds2792Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2800rna2800-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2800 ID=rna2800|Name=rna2800|organism=Nannochloropsis gaditana|type=mRNA|length=1722bp
ATGCCTCAAGGCACGAGTGAAAATGTGGCTGTATACGTGCATAGTTCGTC
AGTAAACCCATCAGAAGGAGATACTGTTGTACATGTTGCCGATACAAAAC
CCTCCGCCAACGTGCCACCAGACGGAGAGGCTTCGTCCCCCGAAATTCCA
CCGACATCTCTACAAGACGCCCGAGGCTCCAGTCTTTCATCATCAATATC
ACGCATTGAATCGACGTTGAGTGACAATGTCTTCACTCATCCGCCTCCTT
CCAAATATTCCTACTTCGTGGCGGCCATGGCCTGCTTAAATAGCTGCAAT
CTAGGCTACGATGTTGGTTCTGTCGGAGGCGCGGCACTCTTGATGCAGGA
AGAATTCGAGTGGTCATCCTGGGACCTTAGCTTCTATGTTGGTTCCATGA
ATTTCTTTTGCATTTTTGGGGCTTTGAACGCGGGATACATTTGTGACATG
GTTGGCCGTCGCCGCACTTTCTCGATATCCTGCGTTATTTTCATTACGGG
CATCCTGATTCAGGTGCTAGCACGGGCCTTTCCCCTCGCCATGTTTGGCC
GTTTTCTCATTGGTATTGGGGTGGGCCTCGGGCTCGCCATTGACGCACTT
TACATTGGCGAAATCGCCCCTCCCAGCCACCGTGGGCACCTGGTGTCCTT
CTCGGAGGTGGCGCTGAATTTTGGGATCATGTTGGGTTTTGTCGCGGACT
ACGCACTTCTAGATGTGGGGCCTGGACTGGATTGGCGCTTGATGCTGGGC
TTAGGGATGGTGATGCCCTCCATCCTCATCGTCCTCTCCTTCACGGTCAT
GCCGGAATCTCCCCGCTGGCTTTTGATGCGGGGTCGGCGGGAGGAAGCCG
TAGCAGTATTGCGGAAAGTTTACATGCCAGGGAGCAATGTGGACGGTGTT
GTTGCTCAGATAGAACATCATATACAAGCTGATTTCGCCGCGGATAAACA
CAGCAGTTGGCACGCCATTTTTTGTCCGACTCCGCCCGTGCGGCTGATGC
TTTTGGCAGGGATTGGGCTTGCGGCTTGCCAGCAATTGAGCGGGTGTGAA
AGTTTGATATATTTCTCTCCAGAATTCATGAGAGACGCCGGCTTTGTCAC
GAAGAACGCGGCCTTTGGGATGACCATCCTTGTAGGGGCGAGCAAAACGC
TTTTCACCATCTTAGCCGCCCTGTACGTGGACCAAATGGGTCGTCGGCCC
TTGCTTTTCATCTCCATCGGAGGACTCTTTGTCTTCCTGATCGTGATGGG
CCTGGCCTTTGAACGAGAGAGTCTGGCCTGGTTGATGGTGGTAGGTATGT
GCCTCTATGTCGCTTTTTTCTCCTTGGGAGTTGGTCCATTAACGTGGGTA
GGGACCACTGAGGTATTCAGCACGCGCATCCGTGCCAAGGCCATGTCATT
GGCAACGTCCTCCAACCGTCTTATCGCTGGAATCGTTGCGAGTACAACGC
TCCCCCTGGTCCAGGCGCTGACACCCATGGGGTTCTTCTTCTTCTACGCC
TGCATGACGATGGGCACTGGGGCCTACGTGTATGTCTTCTTTCCTGAAAC
GAAAGGAAAGTCTCTTGAAGAGGTGGAAGAATATTTTGAACGGGTTGCAG
CACAGGCGGGTGCCCGGAGAAATAGGAAGAAGGGAGGTAACCGGGAGGGT
GAGCAGATGTACACGGCCCACACCGACGGATCGAATGAAAGTGAGGAACG
CCAAGTTGAAATGATCAGCTGA
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protein sequence of rna2800

>rna2800-protein ID=rna2800-protein|Name=rna2800|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
MNTGYRQLSLQFPFHLIVCQRNNSGSLLHWLRPLFPFRVMGRLYVLIAGS
FLAGFLVACTSSTPTSPPPHRLRRALEAFSLIPDAKVRMGELEAPFAAKE
HDVGSEGEIKNTVNEHYNPAGGRGAAASQTTEEVYKVTTENSEPTIEHVR
LVPRYITLAEESERPARVVLPDNYPADQSEDGSEDQAGAKLWPLIMMLHG
YGSDASYHDHFLGLSARINQHGGFLALLPNGTVNSEGKHFWNGIRCCDFD
HQGPDDVTYLTSLVKEAIRTLDVDPRRVYMLGHSNGGAMTQILACEHGEL
FAAIASVTPGEIPSVCAPSHPISVLEVCASEDVIVKAELCASVVGNWTTV
DRCPAAPHLETSRDYDCDPSRPFDDNEGYDQWRDHNCKLEGRETEVTGWV
CKGGSQVEFWWMRGAAHNPALSPQWSDDVVAWLLSKDYVAADS
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mRNA from alignment at CM002459.1:1251272..1252820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2800 ID=rna2800|Name=rna2800|organism=Nannochloropsis gaditana|type=mRNA|length=1549bp|location=Sequence derived from alignment at CM002459.1:1251272..1252820- (Nannochloropsis gaditana)
TTTCCCCATAAAACATAATGAATACAGGATACCGCCAATTGTCTTTACAG
TTTCCCTTCCATTTGATTGTCTGTCAACGAAATAATTCTGGCTCCCTCCT
TCACTGGCTTCGTCCTCTCTTCCCTTTCAGAGTCATGGGTCGTTTGTACG
TTCTGATTGCCGGCAGTTTTCTTGCGGGATTTCTTGTGGCTTGCACATCA
AGCACGCCTACATCTCCCCCACCTCACCGGTTGCGTCGTGCCTTGGAGGC
GTTCAGTCTAATTCCGGACGCAAAGGTCCGCATGGGTGAGCTTGAAGCGC
CTTTCGCGGCAAAAGAGCATGATGTAGGATCAGAGGGGGAAATCAAGAAT
ACTGTGAATGAGCACTACAATCCTGCAGGTGGGCGTGGTGCAGCAGCCTC
TCAGACAACGGAGGAAGTGTACAAAGTGACGACAGAAAACAGTGAGCCTA
CGATAGAGCACGTAAGGCTCGTCCCAAGGTACATAACATTGGCGGAGGAG
TCGGAGAGACCGGCTCGCGTCGTTCTACCCGATAACTATCCCGCCGATCA
ATCGGAAGATGGAAGTGAGGACCAAGCAGGAGCGAAACTTTGGCCCTTGA
TCATGATGCTTCACGGCTACGGGTCTGATGCCTCCTATCACGACCATTTT
TTGGGGCTCAGCGCGCGAATCAACCAACATGGTGGCTTTCTGGCTCTCTT
GCCGAATGGGACCGTGAACAGCGAAGGCAAGCATTTCTGGAACGGGATTC
GCTGTTGCGATTTCGATCATCAGGGCCCCGACGACGTGACGTACCTGACG
AGTTTGGTGAAAGAGGCCATCCGCACTCTCGACGTGGACCCTCGTCGGGT
CTACATGCTGGGGCACTCGAACGGCGGGGCCATGACGCAGATCTTGGCCT
GTGAGCACGGGGAACTCTTCGCGGCCATCGCCAGCGTCACCCCGGGCGAA
ATCCCCAGTGTGTGCGCACCCTCCCACCCCATCTCTGTGTTGGAAGTATG
CGCCTCTGAGGACGTGATTGTGAAGGCGGAGTTGTGTGCAAGTGTCGTAG
GGAACTGGACAACCGTGGATCGTTGCCCCGCCGCCCCTCATTTGGAGACG
AGCAGGGACTATGACTGTGACCCCTCGAGACCTTTCGACGATAACGAGGG
CTATGATCAATGGAGAGACCACAATTGCAAGCTGGAGGGAAGGGAAACGG
AAGTGACAGGATGGGTCTGTAAGGGCGGGAGCCAGGTAGAGTTTTGGTGG
ATGCGCGGGGCCGCCCACAATCCGGCGCTTTCTCCGCAATGGTCCGATGA
TGTCGTCGCGTGGTTGTTGTCAAAGGACTATGTGGCTGCCGACTCTTGAG
GCATTCGGTACGCGGCGCTGAGTACAAAAACAGACAGGTCGCAGTTGTTG
CATGGTTTGGTGAAAGACAGAAACATGGCAGCAAATAGCCCTTTGATAAT
GACGACTTCGACCAGGAGAGTAAAGTGAACTCTTGGAATAGTCACAGATA
CGGAAAGGTGGATTTACGGCAAAGTAATTAAACAAACAGCGGTTTTATG
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Coding sequence (CDS) from alignment at CM002459.1:1251272..1252820-

>rna2800 ID=rna2800|Name=rna2800|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002459.1:1251272..1252820- (Nannochloropsis gaditana)
ATGAATACAGGATACCGCCAATTGTCTTTACAGTTTCCCTTCCATTTGAT
TGTCTGTCAACGAAATAATTCTGGCTCCCTCCTTCACTGGCTTCGTCCTC
TCTTCCCTTTCAGAGTCATGGGTCGTTTGTACGTTCTGATTGCCGGCAGT
TTTCTTGCGGGATTTCTTGTGGCTTGCACATCAAGCACGCCTACATCTCC
CCCACCTCACCGGTTGCGTCGTGCCTTGGAGGCGTTCAGTCTAATTCCGG
ACGCAAAGGTCCGCATGGGTGAGCTTGAAGCGCCTTTCGCGGCAAAAGAG
CATGATGTAGGATCAGAGGGGGAAATCAAGAATACTGTGAATGAGCACTA
CAATCCTGCAGGTGGGCGTGGTGCAGCAGCCTCTCAGACAACGGAGGAAG
TGTACAAAGTGACGACAGAAAACAGTGAGCCTACGATAGAGCACGTAAGG
CTCGTCCCAAGGTACATAACATTGGCGGAGGAGTCGGAGAGACCGGCTCG
CGTCGTTCTACCCGATAACTATCCCGCCGATCAATCGGAAGATGGAAGTG
AGGACCAAGCAGGAGCGAAACTTTGGCCCTTGATCATGATGCTTCACGGC
TACGGGTCTGATGCCTCCTATCACGACCATTTTTTGGGGCTCAGCGCGCG
AATCAACCAACATGGTGGCTTTCTGGCTCTCTTGCCGAATGGGACCGTGA
ACAGCGAAGGCAAGCATTTCTGGAACGGGATTCGCTGTTGCGATTTCGAT
CATCAGGGCCCCGACGACGTGACGTACCTGACGAGTTTGGTGAAAGAGGC
CATCCGCACTCTCGACGTGGACCCTCGTCGGGTCTACATGCTGGGGCACT
CGAACGGCGGGGCCATGACGCAGATCTTGGCCTGTGAGCACGGGGAACTC
TTCGCGGCCATCGCCAGCGTCACCCCGGGCGAAATCCCCAGTGTGTGCGC
ACCCTCCCACCCCATCTCTGTGTTGGAAGTATGCGCCTCTGAGGACGTGA
TTGTGAAGGCGGAGTTGTGTGCAAGTGTCGTAGGGAACTGGACAACCGTG
GATCGTTGCCCCGCCGCCCCTCATTTGGAGACGAGCAGGGACTATGACTG
TGACCCCTCGAGACCTTTCGACGATAACGAGGGCTATGATCAATGGAGAG
ACCACAATTGCAAGCTGGAGGGAAGGGAAACGGAAGTGACAGGATGGGTC
TGTAAGGGCGGGAGCCAGGTAGAGTTTTGGTGGATGCGCGGGGCCGCCCA
CAATCCGGCGCTTTCTCCGCAATGGTCCGATGATGTCGTCGCGTGGTTGT
TGTCAAAGGACTATGTGGCTGCCGACTCTTGA
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Synonyms
Publications