rna280, rna280 (mRNA) Nannochloropsis gaditana

Overview
Namerna280
Unique Namerna280
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1056
Alignment locationCM002455.1:704318..705246 -

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Properties
Property NameValue
Productsugar transporter
Orig transcript idgnl|cribi|Naga_100026g36.10666.mrna
Orig protein idgnl|cribi|Naga_100026g36.10666
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:704318..705246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g36gene269Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30412.1cds280Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna280rna280-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna280 ID=rna280|Name=rna280|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp
ATGGACGCCATCATCGTCAAGTACGACCAAGGCCAAGCAAGCTTCATACG
CTACACTATCTTGGTCACCCTCGGCGACCAGTCTTGGTCCATACTCCGGC
GATTCAATGATTTTAGTCATTTACACGAGGCCCTGTGTCGTTCTTTTCCA
CATTTCCCCGGCCGTCTTCCCCCGAAGAAATGGTTTGGCCGCTTCAATCC
TGAATTTTTGCAGGAACGGAAGGTTGAGCTGCAACAATATTTAGATTCGG
TCACTTCTTTGCCAGGATTTCTGGAGAGAAGTCAGGAGGGCTGCGTGTTC
TTTGAGGTGGATCGCCACTTGGCAGGACAGGACGCGGAGGATAAAGTTCA
TCAAGATGCGAGCGCTCTAGGAAGCCCGTACGTCCCCCTTGTGTCCCTTG
CGATCGCCCCCCCCCTGCTCTCTCACTCCCTCAGAGCCCCGCCGCCGCAC
ATGGCTTTAGTGCCCTCCTCTCTACCCTCAAGCTTTTTGCTCTCACTTCT
ACTTTCTCCTGTTTTCTTTCTTGACGACTGCAGAGCCCAAGTGGAGGAGG
CGCGCATCTCCTCCATCCTGTGGGAGGCCTCGCACGCATTCATCAACACA
TCCTCGCCCCTGCATCAGGTGTCAATTGAACAAATGGACCCCGAGGAGCT
CGCACAACAACGCAACAAGCTGTTGCAGCGCACTTCTGGCCTCCGTGTCC
TCACTGCCACAGTCCCCAGATTGATTTCTGCGACTCACCTGCAGCAGGCG
CATCGACAGGGGCAGCCACAGCCTGGTCACGACGTTGTAGGAAGGGGGAA
GAGCGCACGCCTTCGCACAGGGGGAAGGGGGGTCCATGGATCGGACGGGA
GAGAGTGTAGCAGAGGCAGTATAGAGGAGGGAGGAGTGGGGGTGATAGAC
GTTCTCTCAGCCCCGTCGAGGATGACTCTCGGCGCGCAGGCCGACCTGTT
GGAGCAGCAAGGCTTGAGCGTGGCGGATAAGTTGAGAGAAGCGCGCCTGA
TACGGACGACCGACGACAAGGACTTGATATACAGGGTGGGGGAGGAGAGG
GCCTAA
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protein sequence of rna280

>rna280-protein ID=rna280-protein|Name=rna280|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MDRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGA
YSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQ
RLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATS
CGLIAASR
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mRNA from alignment at CM002455.1:704318..705246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna280 ID=rna280|Name=rna280|organism=Nannochloropsis gaditana|type=mRNA|length=929bp|location=Sequence derived from alignment at CM002455.1:704318..705246- (Nannochloropsis gaditana)
CCGGGAACTCTGACCACGATCCGCCCCTTACACCCCCCTGCCCCTTCTCC
TTTTTGACCTTGCCCAGCGGACGCATTCCTTCCCTCCGTCACCGGGCCTC
TCCGCGTCTTCCTTGGGGCCTCGGCGGCCCTCCTGGCCGGCCTCTTCTTC
GGCGCCTCCTTCAACCCCTCCTACCACATCATGGACCGCGCCGCCGAGCC
TGACTCCTCTTTCGCCAGATATCAAGACCTGCAAATGCTTGACTTCGTCT
TCGCACACTTTTCCGGGATATTCTTGGCCTCGTCCAGCTTTTTCCTTCTC
GCCCTCCTCCTCCACGCCCTGGCAGGCGCCTACTCCCGCCGAGGAGGCAA
GAAGGGCCCCTCGGGCTTTTCCCCCACTGCCTTCAGGCCCTTCGAGCTCT
ACCCCGCCGCCCTGCTCCCCGCCTTCCTCGCGGGCCTCGTGTGGGCGGTC
GCCATGGTCGCCTGGTTTGTCGCCAACCAGCGCCTCACCTCTCTGGCCGT
CACCTTCCCCATCATAACCGCCACGCCGGGGCTGGTCGCCTCCCTCTGGG
GCGTTGTGGTCTTCGGGGAGATCAGGGGCAGGCGGAACCTGGGCGTGTTG
GCGGCGGCCTTTGGCCTGACCGCCACCTCTTGCGGTCTGATAGCCGCGTC
CAGGTAGGCCCCCTGGGGCTGGGGACGAGGCAGCTGACACCACAGTGGGC
AGATGGGTGAGATGGCTGGAAAGTCGGGATCAGACGCTGTGGCTGTCAAT
CAGCCGCTTCGCGGGCCCGTCAGAAAAACAGGGCACGAAAAGCAGGCGAT
ATCTTTTCACGATCGTTTCCGTTGGTACCGCGCATTTCTTTTGTGATTGC
TTCTAGTTATAAATTCGATCTGATATGCAATGGATAGGCAGTGAAGCACG
TTTACTGGCTTTACTGGGCACCTCAAGCC
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Coding sequence (CDS) from alignment at CM002455.1:704318..705246-

>rna280 ID=rna280|Name=rna280|organism=Nannochloropsis gaditana|type=CDS|length=477bp|location=Sequence derived from alignment at CM002455.1:704318..705246- (Nannochloropsis gaditana)
ATGGACCGCGCCGCCGAGCCTGACTCCTCTTTCGCCAGATATCAAGACCT
GCAAATGCTTGACTTCGTCTTCGCACACTTTTCCGGGATATTCTTGGCCT
CGTCCAGCTTTTTCCTTCTCGCCCTCCTCCTCCACGCCCTGGCAGGCGCC
TACTCCCGCCGAGGAGGCAAGAAGGGCCCCTCGGGCTTTTCCCCCACTGC
CTTCAGGCCCTTCGAGCTCTACCCCGCCGCCCTGCTCCCCGCCTTCCTCG
CGGGCCTCGTGTGGGCGGTCGCCATGGTCGCCTGGTTTGTCGCCAACCAG
CGCCTCACCTCTCTGGCCGTCACCTTCCCCATCATAACCGCCACGCCGGG
GCTGGTCGCCTCCCTCTGGGGCGTTGTGGTCTTCGGGGAGATCAGGGGCA
GGCGGAACCTGGGCGTGTTGGCGGCGGCCTTTGGCCTGACCGCCACCTCT
TGCGGTCTGATAGCCGCGTCCAGGTAG
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Synonyms
Publications