EWM30412.1, cds280 (CDS) Nannochloropsis gaditana

Overview
NameEWM30412.1
Unique Namecds280
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:704590..705066 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30412.1
Productsugar transporter
Orig transcript idgnl|cribi|Naga_100026g36.10666.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:704590..705066 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0034219carbohydrate transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015144carbohydrate transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR010651Sugar_transport
Homology
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|585113072|gb|EWM30412.1| (sugar transporter [Nannochloropsis gaditana])

HSP 1 Score: 310.071 bits (793), Expect = 1.107e-106
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MDRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
            MDRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR
Sbjct:    1 MDRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|696974099|ref|XP_009556754.1| (PREDICTED: transmembrane protein 144-like [Cuculus canorus])

HSP 1 Score: 109.768 bits (273), Expect = 7.566e-27
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   20 LDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGL 146
            LD+VFAHFSGIFL S+ +FL+   +            K  P+           +YP A+LP F++G++WA+A   WF+AN  L+++ V+FPIITA PGLVA++WGV+VF EI+G RN  +L+ AF +
Sbjct:  112 LDYVFAHFSGIFLTSTVYFLIYCAVR-----------KNKPN-----------VYPQAILPGFVSGVLWAIANCCWFIANHYLSAV-VSFPIITAGPGLVAAMWGVLVFKEIKGLRNYALLSVAFCI 215          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|1101612578|ref|XP_018970691.1| (PREDICTED: transmembrane protein 144-like [Cyprinus carpio])

HSP 1 Score: 112.849 bits (281), Expect = 8.569e-27
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
            + A++PDS ++       LD+VFA +SGIFL S+ +F+L   +            KK          RP +++P A+LP FL+G++W VA   WF+AN  L+++ V+FPIIT  PGL+A+LWGVVVF E++G RN  VL  AF L  +   L A S+
Sbjct:  258 NHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFILYCAI------------KKN---------RP-QVFPKAVLPGFLSGIMWGVATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 390          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|1020491998|ref|XP_016084431.1| (PREDICTED: transmembrane protein 144-like [Sinocyclocheilus grahami])

HSP 1 Score: 112.849 bits (281), Expect = 1.119e-26
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
            + A++PDS ++       LD+VFA +SGIFL S+ +F+L   +            KK          RP +++P A+LP FL+G++W +A   WF+AN  L+++ V+FPIIT  PGL+A+LWGVVVF E++G RN  VL  AF L  +   L A S+
Sbjct:  257 NHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFILYCAI------------KKN---------RP-QVFPKAVLPGFLSGIMWGIATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 389          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|1025130022|ref|XP_016414386.1| (PREDICTED: transmembrane protein 144-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 112.464 bits (280), Expect = 1.154e-26
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
            + A++PDS ++       LD+VFA +SGIFL S+ +F+L   +            KK          RP +++P A+LP FL+G++W +A   WF+AN  L+++ V+FPIIT  PGL+A+LWGVVVF E++G RN  VL  AF L  +   L A S+
Sbjct:  257 NHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFILYCAI------------KKN---------RP-QVFPKAVLPGFLSGIMWGIATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 389          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|1024929438|ref|XP_016300312.1| (PREDICTED: transmembrane protein 144-like [Sinocyclocheilus anshuiensis])

HSP 1 Score: 112.464 bits (280), Expect = 1.324e-26
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
            + A++PDS ++       LD+VFA +SGIFL S+ +F+L   +            KK          RP +++P A+LP FL+G++W +A   WF+AN  L+++ V+FPIIT  PGL+A+LWGVVVF E++G RN  VL  AF L  +   L A S+
Sbjct:  258 NHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTMYFILYCAI------------KKN---------RP-QVFPKAVLPGFLSGIMWGIATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 390          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|1121963217|ref|XP_019469975.1| (PREDICTED: transmembrane protein 144 isoform X2 [Meleagris gallopavo])

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-26
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGL 146
            D     ++++AR      LD+VFAHFSGIFL S+ +FL+   +            K  P+           +YP A+LP F++GL+WAVA   WF+AN  L+++ V+FPIITA PGL+A++WGV+VF EI+G +N  +L+ AF +
Sbjct:  255 DHGRRNETTYARASQFD-LDYVFAHFSGIFLTSTIYFLIYCAVR-----------KNKPN-----------VYPQAILPGFVSGLLWAVANCCWFIANHYLSAV-VSFPIITAGPGLIAAMWGVLVFKEIKGLKNYVLLSVAFCI 375          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|733884098|ref|XP_010707740.1| (PREDICTED: transmembrane protein 144 isoform X1 [Meleagris gallopavo])

HSP 1 Score: 111.694 bits (278), Expect = 2.616e-26
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGL 146
            D     ++++AR      LD+VFAHFSGIFL S+ +FL+   +            K  P+           +YP A+LP F++GL+WAVA   WF+AN  L+++ V+FPIITA PGL+A++WGV+VF EI+G +N  +L+ AF +
Sbjct:  257 DHGRRNETTYARASQFD-LDYVFAHFSGIFLTSTIYFLIYCAVR-----------KNKPN-----------VYPQAILPGFVSGLLWAVANCCWFIANHYLSAV-VSFPIITAGPGLIAAMWGVLVFKEIKGLKNYVLLSVAFCI 377          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|326918275|ref|XP_003205415.1| (PREDICTED: transmembrane protein 144 isoform X4 [Meleagris gallopavo] >gi|1121963220|ref|XP_019469976.1| PREDICTED: transmembrane protein 144 isoform X4 [Meleagris gallopavo])

HSP 1 Score: 110.923 bits (276), Expect = 2.774e-26
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGL 146
            D     ++++AR      LD+VFAHFSGIFL S+ +FL+   +            K  P+           +YP A+LP F++GL+WAVA   WF+AN  L+++ V+FPIITA PGL+A++WGV+VF EI+G +N  +L+ AF +
Sbjct:  224 DHGRRNETTYARASQFD-LDYVFAHFSGIFLTSTIYFLIYCAVR-----------KNKPN-----------VYPQAILPGFVSGLLWAVANCCWFIANHYLSAV-VSFPIITAGPGLIAAMWGVLVFKEIKGLKNYVLLSVAFCI 344          
BLAST of EWM30412.1 vs. NCBI_GenBank
Match: gi|966652525|gb|KTF87427.1| (hypothetical protein cypCar_00019904 [Cyprinus carpio])

HSP 1 Score: 111.309 bits (277), Expect = 3.652e-26
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query:    2 DRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
            + A++PDS ++       LD+VFA +SGIFL S+ +F+L   +            K  P           +++P A+LP FL+G++W VA   WF+AN  L+++ V+FPIIT  PGL+A+LWGVVVF E++G RN  VL  AF L  +   L A S+
Sbjct:  258 NHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFVLYCAIK-----------KNKP-----------QVFPKAVLPGFLSGIMWGVATCCWFLANNYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLIVAFCLVLSGALLTAFSK 390          
The following BLAST results are available for this feature:
BLAST of EWM30412.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113072|gb|EWM30412.1|1.107e-106100.00sugar transporter [Nannochloropsis gaditana][more]
gi|696974099|ref|XP_009556754.1|7.566e-2744.88PREDICTED: transmembrane protein 144-like [Cuculus... [more]
gi|1101612578|ref|XP_018970691.1|8.569e-2741.40PREDICTED: transmembrane protein 144-like [Cyprinu... [more]
gi|1020491998|ref|XP_016084431.1|1.119e-2640.76PREDICTED: transmembrane protein 144-like [Sinocyc... [more]
gi|1025130022|ref|XP_016414386.1|1.154e-2640.76PREDICTED: transmembrane protein 144-like [Sinocyc... [more]
gi|1024929438|ref|XP_016300312.1|1.324e-2640.76PREDICTED: transmembrane protein 144-like [Sinocyc... [more]
gi|1121963217|ref|XP_019469975.1|2.471e-2641.38PREDICTED: transmembrane protein 144 isoform X2 [M... [more]
gi|733884098|ref|XP_010707740.1|2.616e-2641.38PREDICTED: transmembrane protein 144 isoform X1 [M... [more]
gi|326918275|ref|XP_003205415.1|2.774e-2641.38PREDICTED: transmembrane protein 144 isoform X4 [M... [more]
gi|966652525|gb|KTF87427.1|3.652e-2640.13hypothetical protein cypCar_00019904 [Cyprinus car... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna280rna280Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications