rna2797, rna2797 (mRNA) Nannochloropsis gaditana

Overview
Namerna2797
Unique Namerna2797
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1600
Alignment locationCM002459.1:1244332..1245120 +

Link to JBrowse

Properties
Property NameValue
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_100323g5.1694.mrna
Orig protein idgnl|cribi|Naga_100323g5.1694
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1244332..1245120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100323g5gene2677Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2797rna2797-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27883.1cds2789Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2797 ID=rna2797|Name=rna2797|organism=Nannochloropsis gaditana|type=mRNA|length=1600bp
CCCCGTCATCCGTCCCTCCCAGGTCCGCGTCTTCCGATTTATCACGGAGG
GAACAGTGGAAGAGAAGATTGTGGAGCGAGCAGATCGAAAACTCTTTTTG
GATGCGGCGGTCATTCAGCAGGGTCGTCTGGCGGAGAAACACAATTCAGT
TTCCAAGGATGAGCTCCTGCATATGGTCAAATTTGGTGCCGATGAGATAT
TGAACGCGGCCGGCAAGGGCTTTACGGACGAAGACATCGACCTTATTCTT
CGCAAAGGCGAGGCGAAAACCGAAGAGCAGACGGCCAAGTACCAACAGAA
CGTGCAGCATAATCTGGCCAAATTTACCCTGCTTGATGACACGGAAGAAA
GGAATCTCTTTGAATTCGAGGGGAAGGACTACAGCAATAAGCGAAAAGAC
GGGCTCGTCTTTGACATGGGACAACGCGAACGACGCCCCACCATGAACTA
CGACGTGGACTCCTACTACCGCTCAGCCATGAAGGGTGGAACCGGTGCCC
GAGGCGACAAGGAGGGATCGACGAAGAGGCCGCGACGTCTGGTGCTTCCT
GAGCACCAATTCTTCAATCGTCCTCGATTGCAGCAACTTCACGAGAAGGA
GCAAGCACTCGCTTTGAAACGGCAGGCACGATGGGCATTCATCAAAGAGC
TGAGAGCCGGTCGAAAAGCGGCTGTCGCGCAGCTCGCGGCTGGTGAAGCA
CCTGAGGACGTAGCCCGAGACCTGGAGGAAGAACTCAATGATGGTCGCTT
CGACCTACCGCCCGAAGAGCAGGAGGAGCGAAAGGCTCTAATGGAGGAGG
GCTTCAAGAACTGGAGCCGAAAAGACCTGCGGACCCTCGTCACCTCCATT
GAGCGCTTTGGCCGCGCGGATAGGGCAAGCATCCTCCGCGAGACTGCCGC
GGAGACAGGAAAAGATGAGAACGAAGTTACCGCCTATTATGACACGTTTA
CTGCCCGCATGAAGGAGTTGCCCAATTGGCAAGCCTTACAGGACAGGATC
CGCCGAGGGGAAGCTCGCATTGCCCGGAACAAGCAGATCAAAGAGGCGCT
CGAACGCAAGGTGGCCGGGCATAAGAATCCTTTACAGACGCTGACGCTCA
ATTACCAGGGCGGCATTGGTAAACAGCAGCAAGGCCGCCTTTGGACGGAT
GAAGAGGATATATTCCTCCTCATCCTCATGCATAAATTCGAATATGGCAA
CTGGGAGCGCATTCGCATGGAGATTCGGAAGAGCGAGAAATTTTGTTTCG
ATTGGTTTTTCAAAAGTCGGTCTCCTCAAGAACTCAACAAGCGCGGCGAC
ACCCTGATCAAGTTGATCGAGCGGGAATATGGAGAGGCGGAGGGTGGATC
GGGAAGGAAGTCCTATTCTAGTCAGAGGCGGAACAAGCGAAAGCGCGAGG
AGGAAGGCGAGGCGGCAGGAGAGGACGAGGAAGATGAGGACGAGATGGAG
ATTGAGGACGATGAAATGGAAGATGAGGGAGAAGAAGACTACGGACAAGA
CGAGGAGAGCTTGGCCAGTGGTGTCGTGTCTGAATCGACGCAAAAATCAA
CGCGTTCAAAGGAAGGTAGTGGGATGCATAAAAAGAAATGGTCCTACTAG
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protein sequence of rna2797

>rna2797-protein ID=rna2797-protein|Name=rna2797|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEES
SAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKT
MGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY
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mRNA from alignment at CM002459.1:1244332..1245120+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2797 ID=rna2797|Name=rna2797|organism=Nannochloropsis gaditana|type=mRNA|length=789bp|location=Sequence derived from alignment at CM002459.1:1244332..1245120+ (Nannochloropsis gaditana)
CATGTGAATTTGGCTGTGTACGAGATTGGAGAGGGTTGTTTTTTAGTATT
AGACTGGTAAAGGATAGAGACTTCCGTCCAAAAAATGCATCATGTATTCC
ACTCCTGTGCTCATCCTGTCAAAACTTTGCTCCCACCAACAGTACATTCA
AGAAAAGTCATGGCCGCATGGCGTGCTTCCATCTCCAAGCACGTTCGTGA
GCTCCGTTTTCTCATAAGCGCTTCTGAGGAAAGCAGCGCCGCCGCGCGCT
CTTACATCAGGCACAACTATGACGAGCTGAAAATGCTGAACCCCACTACC
CCTTTCCTCGTACGCGATGGCTGGCCAGGAAAAGATCCTTACGTGGTTGC
CACATATGACTGGGGAAAAGAAGTGATAAAAACCATGGGCGGCTTGGACG
AGAAGGGCATCGATGCCTTGTTAAAAGGCTTAGTcgaggatgggaaaagc
CTTCCGAAATACACACATCCGCCGCTGAGGGGTACGCCGGACGCCATCGT
GGACGCTTTGCCACGGGACGTATTCTACTGAGCAAAGAATGTTATTTTTG
TGCGAGTCCCTGTGACAAGGAAccggaaagagaaggccaGAAGTaggaat
ggaaagggggCGAGACGCAGGTGTCGGAGTCGGGAGGCCGATGAAAGATA
ATGGCAAAACCAGAAAAACAACTCTCGGGGGGAAAATCGTTCCTTGCCAT
CGTAGCCCCCACGCATTGAAAAGATTTCAGTATTTCAGGCCCGGTGGGAG
GGCCCCCGTAACttctcatctctccctccccaccccccg
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Coding sequence (CDS) from alignment at CM002459.1:1244332..1245120+

>rna2797 ID=rna2797|Name=rna2797|organism=Nannochloropsis gaditana|type=CDS|length=447bp|location=Sequence derived from alignment at CM002459.1:1244332..1245120+ (Nannochloropsis gaditana)
ATGCATCATGTATTCCACTCCTGTGCTCATCCTGTCAAAACTTTGCTCCC
ACCAACAGTACATTCAAGAAAAGTCATGGCCGCATGGCGTGCTTCCATCT
CCAAGCACGTTCGTGAGCTCCGTTTTCTCATAAGCGCTTCTGAGGAAAGC
AGCGCCGCCGCGCGCTCTTACATCAGGCACAACTATGACGAGCTGAAAAT
GCTGAACCCCACTACCCCTTTCCTCGTACGCGATGGCTGGCCAGGAAAAG
ATCCTTACGTGGTTGCCACATATGACTGGGGAAAAGAAGTGATAAAAACC
ATGGGCGGCTTGGACGAGAAGGGCATCGATGCCTTGTTAAAAGGCTTAGT
cgaggatgggaaaagcCTTCCGAAATACACACATCCGCCGCTGAGGGGTA
CGCCGGACGCCATCGTGGACGCTTTGCCACGGGACGTATTCTACTGA
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Synonyms
Publications