EWM27883.1, cds2789 (CDS) Nannochloropsis gaditana

Overview
NameEWM27883.1
Unique Namecds2789
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1244416..1244862 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27883.1
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_100323g5.1694.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1244416..1244862 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR016464NADH_Ub_cplx-1_asu_su-2
IPR012336Thioredoxin-like_fold
IPR007741Ribosome/NADH_DH
Homology
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|585110214|gb|EWM27883.1| (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 305.449 bits (781), Expect = 3.081e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query:    1 MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148
            MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY
Sbjct:    1 MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|553186059|ref|XP_005854353.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >gi|553195408|ref|XP_005856140.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >gi|422292907|gb|EKU20208.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >gi|422294706|gb|EKU22006.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 253.447 bits (646), Expect = 5.381e-85
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:   26 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148
            MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY
Sbjct:    1 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 123          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|695408961|ref|XP_009524795.1| (hypothetical protein PHYSODRAFT_557851 [Phytophthora sojae] >gi|348682262|gb|EGZ22078.1| hypothetical protein PHYSODRAFT_557851 [Phytophthora sojae])

HSP 1 Score: 98.5969 bits (244), Expect = 1.752e-23
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS+ ++ELRF+   + +SSA  R++ R NY ELKMLNP TPF+ R+     +P+V A +DWGKE    + G  +K I A+LKGLV+ G SLPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYGELKMLNPNTPFVYREA-EEMEPFVYARFDWGKEKKVPVPGKSDKEILAVLKGLVDHGLSLPK 98          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|298714501|emb|CBJ27523.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.057e-22
Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKY-THPPLRGTPDAIVDA 141
            AWRAS+S++VRELRF      +S A  R + R NY ELK LNP  P L+R+G  G DPY++ATYD+G E   ++ GL ++ I   ++  VE G SLP     P  R      V A
Sbjct:    2 AWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKALNPGFPILLREG-TGADPYLLATYDYGVEHRLSLSGLSQENIAKEVEKAVEKGSSLPLSPMQPSFRSASAGAVKA 115          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|669147638|ref|XP_008609381.1| (hypothetical protein SDRG_05445 [Saprolegnia diclina VS20] >gi|530738977|gb|EQC37219.1| hypothetical protein SDRG_05445 [Saprolegnia diclina VS20])

HSP 1 Score: 95.5153 bits (236), Expect = 1.801e-22
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS++V+ELRF+  ++ ESS+  RS+ R NY+ELKMLNP TPF+ R+    K P+V A YDWGKE    +       I  +LK LV+ G SLP+
Sbjct:    2 SWRAQISRNVQELRFVACSTSESSSGLRSFFRRNYNELKMLNPRTPFVYREAEELK-PFVYARYDWGKEKQVFLDDKTPDEITRILKDLVDHGASLPR 98          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|1173949855|gb|OQR97854.1| (hypothetical protein ACHHYP_09871 [Achlya hypogyna])

HSP 1 Score: 95.1301 bits (235), Expect = 3.337e-22
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS++V+ELRF+  A+ ESS+  R + R NY+ELKMLNP TPF+ R+     +P+V A YDWG E    +   +   I  +LK LVE G+ LP+
Sbjct:    2 SWRAQISRNVQELRFVACATSESSSGLRKFFRRNYNELKMLNPRTPFVYREA-EDLEPFVYARYDWGVEKQVYLNNKNADEITRILKDLVEHGEKLPR 98          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|813146233|ref|XP_012199859.1| (hypothetical protein SPRG_05892 [Saprolegnia parasitica CBS 223.65] >gi|641535446|gb|KDO29356.1| hypothetical protein SPRG_05892 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 94.7449 bits (234), Expect = 4.568e-22
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS++V+ELRF+  ++ ESS+  R++ R NY+ELKMLNP TPF+ R+    K P+V A YDWGKE    +       I  +LK LV+ G SLP+
Sbjct:    2 SWRAQISRNVQELRFVACSTSESSSGLRTFFRRNYNELKMLNPRTPFVYREAEELK-PFVYARYDWGKEKQVFLDDKTPDEITRILKDLVDHGASLPR 98          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|675197981|ref|XP_008907875.1| (hypothetical protein PPTG_12903 [Phytophthora parasitica INRA-310] >gi|566020344|gb|ETI43255.1| hypothetical protein F443_11704 [Phytophthora parasitica P1569] >gi|567957725|gb|ETK83323.1| hypothetical protein L915_11394 [Phytophthora parasitica] >gi|567986463|gb|ETL36787.1| hypothetical protein L916_11300 [Phytophthora parasitica] >gi|568015738|gb|ETL89915.1| hypothetical protein L917_11192 [Phytophthora parasitica] >gi|568046084|gb|ETM43209.1| hypothetical protein L914_11238 [Phytophthora parasitica] >gi|568092093|gb|ETN06907.1| hypothetical protein PPTG_12903 [Phytophthora parasitica INRA-310] >gi|570323958|gb|ETO71906.1| hypothetical protein F444_11788 [Phytophthora parasitica P1976] >gi|570947848|gb|ETP13105.1| hypothetical protein F441_11637 [Phytophthora parasitica CJ01A1] >gi|570980475|gb|ETP41129.1| hypothetical protein F442_11606 [Phytophthora parasitica P10297] >gi|970654202|gb|KUF92545.1| NADH dehydrogenase 1 alpha subcomplex subunit 2 [Phytophthora nicotianae] >gi|970661915|gb|KUF99341.1| Histone-lysine N-methyltransferase [Phytophthora nicotianae])

HSP 1 Score: 93.5893 bits (231), Expect = 1.245e-21
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS+ ++ELRF+   + +SSA  R++ R NY+ELKMLNP TPF+ R+     +P+V A +DWG E    + G  +K I  +LKGLV+ G +LPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYEELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEKKVPVPGKSDKEILTVLKGLVDHGLTLPK 98          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|953485783|emb|CEG49961.1| (nadh dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 92.0485 bits (227), Expect = 6.645e-21
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS+ +RELRF+   + +SSA  R++ R NY ELKMLNP TPF+ R+     +P+V A +DWG E    +    ++ I  +LKGLV+ G +LPK
Sbjct:    2 SWRAQISRSIRELRFVACDTSQSSAGLRTFFRKNYSELKMLNPGTPFVYREA-DEMEPFVYARFDWGVEKKVLVADKSDEEILTILKGLVDHGLTLPK 98          
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|1214696892|gb|OWZ10298.1| (hypothetical protein PHMEG_00016873 [Phytophthora megakarya])

HSP 1 Score: 91.2781 bits (225), Expect = 1.191e-20
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
            +WRA IS+ ++ELRF+   + +SSA  R++ R NY+ELKMLNP TPF+ R+     +P+V A +DWG E    +    +K I  +L+GLV+ G +LPK
Sbjct:    2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYEELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEQKVPVPNKSDKEILTVLRGLVDHGLTLPK 98          
The following BLAST results are available for this feature:
BLAST of EWM27883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110214|gb|EWM27883.1|3.081e-105100.00nadh dehydrogenase [Nannochloropsis gaditana][more]
gi|553186059|ref|XP_005854353.1|5.381e-85100.00NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
gi|695408961|ref|XP_009524795.1|1.752e-2350.00hypothetical protein PHYSODRAFT_557851 [Phytophtho... [more]
gi|298714501|emb|CBJ27523.1|1.057e-2244.35conserved unknown protein [Ectocarpus siliculosus][more]
gi|669147638|ref|XP_008609381.1|1.801e-2248.98hypothetical protein SDRG_05445 [Saprolegnia dicli... [more]
gi|1173949855|gb|OQR97854.1|3.337e-2246.94hypothetical protein ACHHYP_09871 [Achlya hypogyna... [more]
gi|813146233|ref|XP_012199859.1|4.568e-2247.96hypothetical protein SPRG_05892 [Saprolegnia paras... [more]
gi|675197981|ref|XP_008907875.1|1.245e-2146.94hypothetical protein PPTG_12903 [Phytophthora para... [more]
gi|953485783|emb|CEG49961.1|6.645e-2145.92nadh dehydrogenase [Plasmopara halstedii][more]
gi|1214696892|gb|OWZ10298.1|1.191e-2044.90hypothetical protein PHMEG_00016873 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2797rna2797Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications