EWM27883.1, cds2789 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|585110214|gb|EWM27883.1| (nadh dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 305.449 bits (781), Expect = 3.081e-105 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query: 1 MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148
MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY
Sbjct: 1 MHHVFHSCAHPVKTLLPPTVHSRKVMAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|553186059|ref|XP_005854353.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >gi|553195408|ref|XP_005856140.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >gi|422292907|gb|EKU20208.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526] >gi|422294706|gb|EKU22006.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 253.447 bits (646), Expect = 5.381e-85 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 26 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 148
MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY
Sbjct: 1 MAAWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKYTHPPLRGTPDAIVDALPRDVFY 123
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|695408961|ref|XP_009524795.1| (hypothetical protein PHYSODRAFT_557851 [Phytophthora sojae] >gi|348682262|gb|EGZ22078.1| hypothetical protein PHYSODRAFT_557851 [Phytophthora sojae]) HSP 1 Score: 98.5969 bits (244), Expect = 1.752e-23 Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS+ ++ELRF+ + +SSA R++ R NY ELKMLNP TPF+ R+ +P+V A +DWGKE + G +K I A+LKGLV+ G SLPK
Sbjct: 2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYGELKMLNPNTPFVYREA-EEMEPFVYARFDWGKEKKVPVPGKSDKEILAVLKGLVDHGLSLPK 98
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|298714501|emb|CBJ27523.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 1.057e-22 Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPKY-THPPLRGTPDAIVDA 141
AWRAS+S++VRELRF +S A R + R NY ELK LNP P L+R+G G DPY++ATYD+G E ++ GL ++ I ++ VE G SLP P R V A
Sbjct: 2 AWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKALNPGFPILLREG-TGADPYLLATYDYGVEHRLSLSGLSQENIAKEVEKAVEKGSSLPLSPMQPSFRSASAGAVKA 115
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|669147638|ref|XP_008609381.1| (hypothetical protein SDRG_05445 [Saprolegnia diclina VS20] >gi|530738977|gb|EQC37219.1| hypothetical protein SDRG_05445 [Saprolegnia diclina VS20]) HSP 1 Score: 95.5153 bits (236), Expect = 1.801e-22 Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS++V+ELRF+ ++ ESS+ RS+ R NY+ELKMLNP TPF+ R+ K P+V A YDWGKE + I +LK LV+ G SLP+
Sbjct: 2 SWRAQISRNVQELRFVACSTSESSSGLRSFFRRNYNELKMLNPRTPFVYREAEELK-PFVYARYDWGKEKQVFLDDKTPDEITRILKDLVDHGASLPR 98
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|1173949855|gb|OQR97854.1| (hypothetical protein ACHHYP_09871 [Achlya hypogyna]) HSP 1 Score: 95.1301 bits (235), Expect = 3.337e-22 Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS++V+ELRF+ A+ ESS+ R + R NY+ELKMLNP TPF+ R+ +P+V A YDWG E + + I +LK LVE G+ LP+
Sbjct: 2 SWRAQISRNVQELRFVACATSESSSGLRKFFRRNYNELKMLNPRTPFVYREA-EDLEPFVYARYDWGVEKQVYLNNKNADEITRILKDLVEHGEKLPR 98
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|813146233|ref|XP_012199859.1| (hypothetical protein SPRG_05892 [Saprolegnia parasitica CBS 223.65] >gi|641535446|gb|KDO29356.1| hypothetical protein SPRG_05892 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 94.7449 bits (234), Expect = 4.568e-22 Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS++V+ELRF+ ++ ESS+ R++ R NY+ELKMLNP TPF+ R+ K P+V A YDWGKE + I +LK LV+ G SLP+
Sbjct: 2 SWRAQISRNVQELRFVACSTSESSSGLRTFFRRNYNELKMLNPRTPFVYREAEELK-PFVYARYDWGKEKQVFLDDKTPDEITRILKDLVDHGASLPR 98
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|675197981|ref|XP_008907875.1| (hypothetical protein PPTG_12903 [Phytophthora parasitica INRA-310] >gi|566020344|gb|ETI43255.1| hypothetical protein F443_11704 [Phytophthora parasitica P1569] >gi|567957725|gb|ETK83323.1| hypothetical protein L915_11394 [Phytophthora parasitica] >gi|567986463|gb|ETL36787.1| hypothetical protein L916_11300 [Phytophthora parasitica] >gi|568015738|gb|ETL89915.1| hypothetical protein L917_11192 [Phytophthora parasitica] >gi|568046084|gb|ETM43209.1| hypothetical protein L914_11238 [Phytophthora parasitica] >gi|568092093|gb|ETN06907.1| hypothetical protein PPTG_12903 [Phytophthora parasitica INRA-310] >gi|570323958|gb|ETO71906.1| hypothetical protein F444_11788 [Phytophthora parasitica P1976] >gi|570947848|gb|ETP13105.1| hypothetical protein F441_11637 [Phytophthora parasitica CJ01A1] >gi|570980475|gb|ETP41129.1| hypothetical protein F442_11606 [Phytophthora parasitica P10297] >gi|970654202|gb|KUF92545.1| NADH dehydrogenase 1 alpha subcomplex subunit 2 [Phytophthora nicotianae] >gi|970661915|gb|KUF99341.1| Histone-lysine N-methyltransferase [Phytophthora nicotianae]) HSP 1 Score: 93.5893 bits (231), Expect = 1.245e-21 Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS+ ++ELRF+ + +SSA R++ R NY+ELKMLNP TPF+ R+ +P+V A +DWG E + G +K I +LKGLV+ G +LPK
Sbjct: 2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYEELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEKKVPVPGKSDKEILTVLKGLVDHGLTLPK 98
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|953485783|emb|CEG49961.1| (nadh dehydrogenase [Plasmopara halstedii]) HSP 1 Score: 92.0485 bits (227), Expect = 6.645e-21 Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS+ +RELRF+ + +SSA R++ R NY ELKMLNP TPF+ R+ +P+V A +DWG E + ++ I +LKGLV+ G +LPK
Sbjct: 2 SWRAQISRSIRELRFVACDTSQSSAGLRTFFRKNYSELKMLNPGTPFVYREA-DEMEPFVYARFDWGVEKKVLVADKSDEEILTILKGLVDHGLTLPK 98
BLAST of EWM27883.1 vs. NCBI_GenBank
Match: gi|1214696892|gb|OWZ10298.1| (hypothetical protein PHMEG_00016873 [Phytophthora megakarya]) HSP 1 Score: 91.2781 bits (225), Expect = 1.191e-20 Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 28 AWRASISKHVRELRFLISASEESSAAARSYIRHNYDELKMLNPTTPFLVRDGWPGKDPYVVATYDWGKEVIKTMGGLDEKGIDALLKGLVEDGKSLPK 125
+WRA IS+ ++ELRF+ + +SSA R++ R NY+ELKMLNP TPF+ R+ +P+V A +DWG E + +K I +L+GLV+ G +LPK
Sbjct: 2 SWRAQISRSIQELRFVACDTSQSSAGLRTFFRKNYEELKMLNPRTPFVYREA-EEMEPFVYARFDWGVEQKVPVPNKSDKEILTVLRGLVDHGLTLPK 98 The following BLAST results are available for this feature:
BLAST of EWM27883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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