rna279, rna279 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna279
Unique Name	rna279
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	891
Alignment location	CM002455.1:702572..704245 +

Link to JBrowse

Properties


Property Name	Value
Product	sorting nexin-16
Orig transcript id	gnl\|cribi\|Naga_100026g37.10673.mrna
Orig protein id	gnl\|cribi\|Naga_100026g37.10673
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:702572..704245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g37	gene268	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna279	rna279-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30419.1	cds279	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:702572..704245+
coding sequence from alignment at CM002455.1:702572..704245+

mRNA sequence

>rna279 ID=rna279|Name=rna279|organism=Nannochloropsis gaditana|type=mRNA|length=891bp
ATGCGGCGCATTTGGCCTGCTTTTGCCAAACCGCTCAATGCGGTGACTTG
GGAGTCGGCTGCATTCGCATGCCCACGCTCTCTGAACTCGCTTAGAGTCC
TGCACCGGACTACACGGCGCCAGGCGTCAAATCTGCGGAAGTCCTCTAGC
CACTTGGCCGCAAATTATATGTGGCCATCTTCCGCGTCGCGCACTTCAGG
ATTAGCTGTCCCAGGGCACATTCAATGGCGGAGCATGTTCATCCAGACGG
AAAGCACGCCTAACCCCGAGTCCTTAAAATACGTACCGGGAGAGCTGGTG
TTGGACGAGAAGTACGGCACGGGTATGTATTTCCGACAAGGAGACATGGA
GGTGAACCGCTCTCCATTGGCCAAGAAACTCCTGAAGATCGAGGGTGTGA
TGGGAGTCTTCCTGGGACGGACTTTCATCACCATCACCAAGTCGCCTGGT
ATCATCTGGCAGAATCTGAATCCTGAGATCTTCGCCACCGTGATGGACCA
CTACGCGGAGGGGGGGGTGATAGTCAGCGACCACGCAATCGTGAGCGACA
CGACGATCCTGGACACAGACGACGAGGTGGTGGCCATGGTCAAGGAGCTG
ATGGAGTCGCGCATCCGGCCCGCAGTGCAGGAGGACGGCGGGGACATTTT
TTACGAGGGATTCGACCCCGAGAGTGGGCTTGTCAGTGTGCGCCTGGCAG
GCTCGTGCTCGGGCTGCCCCTCGTCAGCGGTAACGCTGAAGAATGGAGTG
GAGAACATGTTGATGCATTACATTCCCGAGGTGAAGGGCATCAGGCAGGT
GGAGGATGACGAGCTCAATGCGGTAAACGAGAGGGAGGCGCAGACGCTGG
AGGAACGACTGGCCAAGGCCGGAATCCCGAGCGCGGAGTGA

protein sequence of rna279

>rna279-protein ID=rna279-protein|Name=rna279|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFP
HFPGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVF
FEVDRHLAGQDAEDKVHQDASALGSPYVPLVSLAIAPPLLSHSLRAPPPH
MALVPSSLPSSFLLSLLLSPVFFLDDCRAQVEEARISSILWEASHAFINT
SSPLHQVSIEQMDPEELAQQRNKLLQRTSGLRVLTATVPRLISATHLQQA
HRQGQPQPGHDVVGRGKSARLRTGGRGVHGSDGRECSRGSIEEGGVGVID
VLSAPSRMTLGAQADLLEQQGLSVADKLREARLIRTTDDKDLIYRVGEER
A

mRNA from alignment at CM002455.1:702572..704245+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna279 ID=rna279|Name=rna279|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp|location=Sequence derived from alignment at CM002455.1:702572..704245+ (Nannochloropsis gaditana)
ATGGACGCCATCATCGTCAAGTACGACCAAGGTTCGTGTCGACTTAGGAT
TTAGCATTGTATCTCAAGGAGTGATAGTGAcatctcttcttctcgcAAAA
CCGAGCCGTGCATACACCGTCTGAATCCCCTCGGCCATGACTAACCTCCT
CACAGGCCAAGCAAGCTTCATACGCTACACTATCTTGGTCACCCTCGGCG
ACCAGTCTTGGTCCATACTCCGGCGATTCAATGATTTTAGTCATTTACAC
GAGGCCCTGTGTCGTTCTTTTCCACATTTCCCCGGCCGTCTTCCCCCGAA
GAAATGGTTTGGCCGCTTCAATCCTGAATTTTTGCAGGAACGGAAGGTTG
AGCTGCAACAATATTTAGATTCGGTCACTTCTTTGCCAGGATTTCTGGAG
AGAAGTCAGGAGGGCTGCGTGTTCTTTGAGGTGAGCATGCCTTGGTATCG
TGATAAGGCCATGAAGTGAGAGCACGTACacggggctggaggggcgTGCG
TTGTTAAGGAAGCCGATGTGTTGAGACGTGGAATATGGCTGATCTTTACA
CTTTTACAGGTGGATCGCCACTTGGCAGGACAGGACGCGGAGGATAAAGT
TCATCAAGATGCGAGCGCTCTAGGAAGCCCGTACGTCCCCCTTGTGTCCC
TTGCgatcgccccccccctgctctcTCACTCCCTCAGAGCCCCGCCGCCG
CACATGGCTTTAGTGCCCTCCTCTCTACCCTCAAGCTTTTTGCTCTCACT
TCTACTTTCTCCTGTTTTCTTTCTTGACGACTGCAGAGcccaagtggagg
aggcgcgcatctcctccatcctgtgGGAGGCCTCGCACGCATTCATCAAC
ACATCCTCGGtaagccccccgccccctgcgaGGGTCCCCTGCTCCCgatt
ctccctctcctgtcaCGATACgggtgggatggaagaggttCCGATGTATT
GTAGGAGGCCACTCTGGGCCCGCCGTTTGTTTAAGGCGCGGTGCCCCAAA
CAGTTGTGACGAACATCTCGCGCACCTCCAACAAATACCCTCATCTGCAC
CCACCACCCTTGTCTTTCTCCCTGTCCTACGCACAGCCCCTGCATCAGGT
GTCAATTGAACAAATGGACCCCGAGGAGCTCGCACAACAACGCAACAAGC
TGTTGCAGCGCACTTCTGGTAAGGCTGCACGGCTTTTCCCCCACCTTCTT
TCCTGTCGTTTCCTGTATGAAGGCCTTTGCATTCCGCCAGGAGGGGGTAA
CATGTACCTCCATTCAAGCCTGGACCTGTccatcttctctctcctATTCC
CATCAGGCCTCCGTGTCCTCACTGCCACAGTCCCCAGATTGATTTCTGCG
ACTCACCTGCAGCAGGCGCATCGACAGGGGCAGCCACAGCCTGGTCACGA
CGTtgtaggaagggggaagagcgcACGCCTTCgcacagggggaagggggg
tcCATGGATCGGACGGGAGAGAGTGTAGCAGAGGCAGtatagaggaggga
ggagtgggggTGATAGACGTTCTCTCAGCCCCGTCGAGGATGACTCTCGG
CGCGCAGGCCGACCTGTTGGAGCAGCAAGGCTTGAGCGTGGCGGATAAGT
TGAGAGAAGCGCGCCTGATACGGACGACCGACGACAAGGACTTGATATac
agggtgggggaggagagggcctaA

Coding sequence (CDS) from alignment at CM002455.1:702572..704245+

>rna279 ID=rna279|Name=rna279|organism=Nannochloropsis gaditana|type=CDS|length=5280bp|location=Sequence derived from alignment at CM002455.1:702572..704245+ (Nannochloropsis gaditana)
ATGGACGCCATCATCGTCAAGTACGACCAAGGCCAAGCAAGCTTCATACG
CTACACTATCTTGGTCACCCTCGGCGACCAGTCTTGGTCCATACTCCGGC
GATTCAATGATTTTAGTCATTTACACGAGGCCCTGTGTCGTTCTTTTCCA
CATTTCCCCGGCCGTCTTCCCCCGAAGAAATGGTTTGGCCGCTTCAATCC
TGAATTTTTGCAGGAACGGAAGGTTGAGCTGCAACAATATTTAGATTCGG
TCACTTCTTTGCCAGGATTTCTGGAGAGAAGTCAGGAGGGCTGCGTGTTC
TTTGAGGTGGATCGCCACTTGGCAGGACAGGACGCGGAGGATAAAGTTCA
TCAAGATGCGAGCGCTCTAGGAAGCCCGTACGTCCCCCTTGTGTCCCTTG
CgatcgccccccccctgctctcTCACTCCCTCAGAGCCCCGCCGCCGCAC
ATGGCTTTAGTGCCCTCCTCTCTACCCTCAAGCTTTTTGCTCTCACTTCT
ACTTTCTCCTGTTTTCTTTCTTGACGACTGCAGAGcccaagtggaggagg
cgcgcatctcctccatcctgtgGGAGGCCTCGCACGCATTCATCAACACA
TCCTCGCCCCTGCATCAGGTGTCAATTGAACAAATGGACCCCGAGGAGCT
CGCACAACAACGCAACAAGCTGTTGCAGCGCACTTCTGGCCTCCGTGTCC
TCACTGCCACAGTCCCCAGATTGATTTCTGCGACTCACCTGCAGCAGGCG
CATCGACAGGGGCAGCCACAGCCTGGTCACGACGTtgtaggaagggggaa
gagcgcACGCCTTCgcacagggggaaggggggtcCATGGATCGGACGGGA
GAGAGTGTAGCAGAGGCAGtatagaggagggaggagtgggggTGATAGAC
GTTCTCTCAGCCCCGTCGAGGATGACTCTCGGCGCGCAGGCCGACCTGTT
GGAGCAGCAAGGCTTGAGCGTGGCGGATAAGTTGAGAGAAGCGCGCCTGA
TACGGACGACCGACGACAAGGACTTGATATacagggtgggggaggagagg
gcctaAATGGACGCCATCATCGTCAAGTACGACCAAGGCCAAGCAAGCTT
CATACGCTACACTATCTTGGTCACCCTCGGCGACCAGTCTTGGTCCATAC
TCCGGCGATTCAATGATTTTAGTCATTTACACGAGGCCCTGTGTCGTTCT
TTTCCACATTTCCCCGGCCGTCTTCCCCCGAAGAAATGGTTTGGCCGCTT
CAATCCTGAATTTTTGCAGGAACGGAAGGTTGAGCTGCAACAATATTTAG
ATTCGGTCACTTCTTTGCCAGGATTTCTGGAGAGAAGTCAGGAGGGCTGC
GTGTTCTTTGAGGTGGATCGCCACTTGGCAGGACAGGACGCGGAGGATAA
AGTTCATCAAGATGCGAGCGCTCTAGGAAGCCCGTACGTCCCCCTTGTGT
CCCTTGCgatcgccccccccctgctctcTCACTCCCTCAGAGCCCCGCCG
CCGCACATGGCTTTAGTGCCCTCCTCTCTACCCTCAAGCTTTTTGCTCTC
ACTTCTACTTTCTCCTGTTTTCTTTCTTGACGACTGCAGAGcccaagtgg
aggaggcgcgcatctcctccatcctgtgGGAGGCCTCGCACGCATTCATC
AACACATCCTCGCCCCTGCATCAGGTGTCAATTGAACAAATGGACCCCGA
GGAGCTCGCACAACAACGCAACAAGCTGTTGCAGCGCACTTCTGGCCTCC
GTGTCCTCACTGCCACAGTCCCCAGATTGATTTCTGCGACTCACCTGCAG
CAGGCGCATCGACAGGGGCAGCCACAGCCTGGTCACGACGTtgtaggaag
ggggaagagcgcACGCCTTCgcacagggggaaggggggtcCATGGATCGG
ACGGGAGAGAGTGTAGCAGAGGCAGtatagaggagggaggagtgggggTG
ATAGACGTTCTCTCAGCCCCGTCGAGGATGACTCTCGGCGCGCAGGCCGA
CCTGTTGGAGCAGCAAGGCTTGAGCGTGGCGGATAAGTTGAGAGAAGCGC
GCCTGATACGGACGACCGACGACAAGGACTTGATATacagggtgggggag
gagagggcctaAATGGACGCCATCATCGTCAAGTACGACCAAGGCCAAGC
AAGCTTCATACGCTACACTATCTTGGTCACCCTCGGCGACCAGTCTTGGT
CCATACTCCGGCGATTCAATGATTTTAGTCATTTACACGAGGCCCTGTGT
CGTTCTTTTCCACATTTCCCCGGCCGTCTTCCCCCGAAGAAATGGTTTGG
CCGCTTCAATCCTGAATTTTTGCAGGAACGGAAGGTTGAGCTGCAACAAT
ATTTAGATTCGGTCACTTCTTTGCCAGGATTTCTGGAGAGAAGTCAGGAG
GGCTGCGTGTTCTTTGAGGTGGATCGCCACTTGGCAGGACAGGACGCGGA
GGATAAAGTTCATCAAGATGCGAGCGCTCTAGGAAGCCCGTACGTCCCCC
TTGTGTCCCTTGCgatcgccccccccctgctctcTCACTCCCTCAGAGCC
CCGCCGCCGCACATGGCTTTAGTGCCCTCCTCTCTACCCTCAAGCTTTTT
GCTCTCACTTCTACTTTCTCCTGTTTTCTTTCTTGACGACTGCAGAGccc
aagtggaggaggcgcgcatctcctccatcctgtgGGAGGCCTCGCACGCA
TTCATCAACACATCCTCGCCCCTGCATCAGGTGTCAATTGAACAAATGGA
CCCCGAGGAGCTCGCACAACAACGCAACAAGCTGTTGCAGCGCACTTCTG
GCCTCCGTGTCCTCACTGCCACAGTCCCCAGATTGATTTCTGCGACTCAC
CTGCAGCAGGCGCATCGACAGGGGCAGCCACAGCCTGGTCACGACGTtgt
aggaagggggaagagcgcACGCCTTCgcacagggggaaggggggtcCATG
GATCGGACGGGAGAGAGTGTAGCAGAGGCAGtatagaggagggaggagtg
ggggTGATAGACGTTCTCTCAGCCCCGTCGAGGATGACTCTCGGCGCGCA
GGCCGACCTGTTGGAGCAGCAAGGCTTGAGCGTGGCGGATAAGTTGAGAG
AAGCGCGCCTGATACGGACGACCGACGACAAGGACTTGATATacagggtg
ggggaggagagggcctaAATGGACGCCATCATCGTCAAGTACGACCAAGG
CCAAGCAAGCTTCATACGCTACACTATCTTGGTCACCCTCGGCGACCAGT
CTTGGTCCATACTCCGGCGATTCAATGATTTTAGTCATTTACACGAGGCC
CTGTGTCGTTCTTTTCCACATTTCCCCGGCCGTCTTCCCCCGAAGAAATG
GTTTGGCCGCTTCAATCCTGAATTTTTGCAGGAACGGAAGGTTGAGCTGC
AACAATATTTAGATTCGGTCACTTCTTTGCCAGGATTTCTGGAGAGAAGT
CAGGAGGGCTGCGTGTTCTTTGAGGTGGATCGCCACTTGGCAGGACAGGA
CGCGGAGGATAAAGTTCATCAAGATGCGAGCGCTCTAGGAAGCCCGTACG
TCCCCCTTGTGTCCCTTGCgatcgccccccccctgctctcTCACTCCCTC
AGAGCCCCGCCGCCGCACATGGCTTTAGTGCCCTCCTCTCTACCCTCAAG
CTTTTTGCTCTCACTTCTACTTTCTCCTGTTTTCTTTCTTGACGACTGCA
GAGcccaagtggaggaggcgcgcatctcctccatcctgtgGGAGGCCTCG
CACGCATTCATCAACACATCCTCGCCCCTGCATCAGGTGTCAATTGAACA
AATGGACCCCGAGGAGCTCGCACAACAACGCAACAAGCTGTTGCAGCGCA
CTTCTGGCCTCCGTGTCCTCACTGCCACAGTCCCCAGATTGATTTCTGCG
ACTCACCTGCAGCAGGCGCATCGACAGGGGCAGCCACAGCCTGGTCACGA
CGTtgtaggaagggggaagagcgcACGCCTTCgcacagggggaagggggg
tcCATGGATCGGACGGGAGAGAGTGTAGCAGAGGCAGtatagaggaggga
ggagtgggggTGATAGACGTTCTCTCAGCCCCGTCGAGGATGACTCTCGG
CGCGCAGGCCGACCTGTTGGAGCAGCAAGGCTTGAGCGTGGCGGATAAGT
TGAGAGAAGCGCGCCTGATACGGACGACCGACGACAAGGACTTGATATac
agggtgggggaggagagggcctaAATGGACGCCATCATCGTCAAGTACGA
CCAAGGCCAAGCAAGCTTCATACGCTACACTATCTTGGTCACCCTCGGCG
ACCAGTCTTGGTCCATACTCCGGCGATTCAATGATTTTAGTCATTTACAC
GAGGCCCTGTGTCGTTCTTTTCCACATTTCCCCGGCCGTCTTCCCCCGAA
GAAATGGTTTGGCCGCTTCAATCCTGAATTTTTGCAGGAACGGAAGGTTG
AGCTGCAACAATATTTAGATTCGGTCACTTCTTTGCCAGGATTTCTGGAG
AGAAGTCAGGAGGGCTGCGTGTTCTTTGAGGTGGATCGCCACTTGGCAGG
ACAGGACGCGGAGGATAAAGTTCATCAAGATGCGAGCGCTCTAGGAAGCC
CGTACGTCCCCCTTGTGTCCCTTGCgatcgccccccccctgctctcTCAC
TCCCTCAGAGCCCCGCCGCCGCACATGGCTTTAGTGCCCTCCTCTCTACC
CTCAAGCTTTTTGCTCTCACTTCTACTTTCTCCTGTTTTCTTTCTTGACG
ACTGCAGAGcccaagtggaggaggcgcgcatctcctccatcctgtgGGAG
GCCTCGCACGCATTCATCAACACATCCTCGCCCCTGCATCAGGTGTCAAT
TGAACAAATGGACCCCGAGGAGCTCGCACAACAACGCAACAAGCTGTTGC
AGCGCACTTCTGGCCTCCGTGTCCTCACTGCCACAGTCCCCAGATTGATT
TCTGCGACTCACCTGCAGCAGGCGCATCGACAGGGGCAGCCACAGCCTGG
TCACGACGTtgtaggaagggggaagagcgcACGCCTTCgcacagggggaa
ggggggtcCATGGATCGGACGGGAGAGAGTGTAGCAGAGGCAGtatagag
gagggaggagtgggggTGATAGACGTTCTCTCAGCCCCGTCGAGGATGAC
TCTCGGCGCGCAGGCCGACCTGTTGGAGCAGCAAGGCTTGAGCGTGGCGG
ATAAGTTGAGAGAAGCGCGCCTGATACGGACGACCGACGACAAGGACTTG
ATATacagggtgggggaggagagggcctaA

Synonyms

Publications