EWM30419.1, cds279 (CDS) Nannochloropsis gaditana

Overview
NameEWM30419.1
Unique Namecds279
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:702572..702602 +
Alignment locationCM002455.1:702727..703001 +
Alignment locationCM002455.1:703131..703430 +
Alignment locationCM002455.1:703658..703739 +
Alignment locationCM002455.1:703878..704245 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30419.1
Productsorting nexin-16
Orig transcript idgnl|cribi|Naga_100026g37.10673.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:702572..702602 +
CM002455.1supercontigCM002455.1:702727..703001 +
CM002455.1supercontigCM002455.1:703131..703430 +
CM002455.1supercontigCM002455.1:703658..703739 +
CM002455.1supercontigCM002455.1:703878..704245 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR001683Phox
Homology
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|585113079|gb|EWM30419.1| (sorting nexin-16 [Nannochloropsis gaditana])

HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHFPGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHLAGQDAEDKVHQDASALGSPYVPLVSLAIAPPLLSHSLRAPPPHMALVPSSLPSSFLLSLLLSPVFFLDDCRAQVEEARISSILWEASHAFINTSSPLHQVSIEQMDPEELAQQRNKLLQRTSGLRVLTATVPRLISATHLQQAHRQGQPQPGHDVVGRGKSARLRTGGRGVHGSDGRECSRGSIEEGGVGVIDVLSAPSRMTLGAQADLLEQQGLSVADKLREARLIRTTDDKDLIYRVGEERA 351
            MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHFPGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHLAGQDAEDKVHQDASALGSPYVPLVSLAIAPPLLSHSLRAPPPHMALVPSSLPSSFLLSLLLSPVFFLDDCRAQVEEARISSILWEASHAFINTSSPLHQVSIEQMDPEELAQQRNKLLQRTSGLRVLTATVPRLISATHLQQAHRQGQPQPGHDVVGRGKSARLRTGGRGVHGSDGRECSRGSIEEGGVGVIDVLSAPSRMTLGAQADLLEQQGLSVADKLREARLIRTTDDKDLIYRVGEERA
Sbjct:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHFPGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHLAGQDAEDKVHQDASALGSPYVPLVSLAIAPPLLSHSLRAPPPHMALVPSSLPSSFLLSLLLSPVFFLDDCRAQVEEARISSILWEASHAFINTSSPLHQVSIEQMDPEELAQQRNKLLQRTSGLRVLTATVPRLISATHLQQAHRQGQPQPGHDVVGRGKSARLRTGGRGVHGSDGRECSRGSIEEGGVGVIDVLSAPSRMTLGAQADLLEQQGLSVADKLREARLIRTTDDKDLIYRVGEERA 351          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|553181384|ref|XP_005853558.1| (hypothetical protein NGA_0473010 [Nannochloropsis gaditana CCMP526] >gi|422295508|gb|EKU22807.1| hypothetical protein NGA_0473010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 101.679 bits (252), Expect = 2.072e-23
Identity = 61/114 (53.51%), Postives = 61/114 (53.51%), Query Frame = 0
Query:   89 GFLERSQEGCVFFEVDRHLAGQDAEDKVHQDASALGSPYVPLVSLAIAPPLLSHSLRAPPPHMALVPSSLPSSFLLSLLLSPVFFLDDCRAQVEEARISSILWEASHAFINTSS 202
            GF ERSQEGCVFFEVDRHLAGQDAEDKVHQDASALGSP                                                    AQVEEARISSILWEASHAFINTSS
Sbjct:   11 GFPERSQEGCVFFEVDRHLAGQDAEDKVHQDASALGSP----------------------------------------------------AQVEEARISSILWEASHAFINTSS 72          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|635365408|emb|CCI46201.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 85.5001 bits (210), Expect = 3.421e-15
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            ++A+I  Y +       Y I +     SW I RRF+DF HLH  L R F      +LP K+WFGRF+ +FL +RK +LQQYL  + ++PG L+     C F +V++HL
Sbjct:    4 LNALIAGY-ETVGDHTEYIIQINCQMGSWMISRRFSDFDHLHARLNRRFGDLIEAKLPEKQWFGRFDSQFLAKRKEKLQQYLAKLLNVPGILD-DVSLCRFLDVEKHL 109          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|325181442|emb|CCA15858.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 83.5741 bits (205), Expect = 1.503e-14
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            ++A+I  Y +       Y I +     SW I RRF+DF HLH  L R F      +LP K+WFGRF+ +FL +R+ +LQQYL  + ++PG L+     C F +V++HL
Sbjct:    4 LNALIAGY-ETVGDHTEYIIQINCQMGSWMISRRFSDFDHLHSRLNRRFGDLIDAKLPEKQWFGRFDSQFLAKRQDKLQQYLVKLLNVPGILD-DISLCRFLDVEKHL 109          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|1214702054|gb|OWZ14315.1| (hypothetical protein PHMEG_00012227 [Phytophthora megakarya])

HSP 1 Score: 78.9518 bits (193), Expect = 5.757e-13
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            + A+I  YD        + + ++     W I RRF+DF  LH  L R F       LP K+WFGRF+P FL +R+  LQ+YLD +  +PG L+ +     F E+++HL
Sbjct:    6 VSALITSYDT-VGDHTEFIVEISCNGGLWRISRRFSDFDQLHSRLVRRFGDLIEASLPEKQWFGRFDPNFLIKRQASLQEYLDGLLQVPGILDDASLQH-FLELEKHL 111          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|675187057|ref|XP_008902413.1| (hypothetical protein PPTG_09272 [Phytophthora parasitica INRA-310] >gi|567966076|gb|ETK91534.1| hypothetical protein L915_04927 [Phytophthora parasitica] >gi|568097701|gb|ETN12443.1| hypothetical protein PPTG_09272 [Phytophthora parasitica INRA-310])

HSP 1 Score: 77.411 bits (189), Expect = 1.870e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            + A+I  YD        + + ++     W I RRF+DF  LH  L R F       LP K+WFGRF+P FL +R+  LQ+YLD +  +PG L+ +     F E+++HL
Sbjct:    6 VSALITGYDT-VGDHTEFIVEISCNGGLWRISRRFSDFDQLHSRLVRRFGDLIEVSLPEKQWFGRFDPNFLIKRQASLQEYLDGLLQVPGILDDASLQH-FLELEKHL 111          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|568054485|gb|ETM51265.1| (hypothetical protein L914_04877 [Phytophthora parasitica])

HSP 1 Score: 77.411 bits (189), Expect = 1.888e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            + A+I  YD        + + ++     W I RRF+DF  LH  L R F       LP K+WFGRF+P FL +R+  LQ+YLD +  +PG L+ +     F E+++HL
Sbjct:    6 VSALITGYDT-VGDHTEFIVEISCNGGLWRISRRFSDFDQLHSRLVRRFGDLIEVSLPEKQWFGRFDPNFLIKRQASLQEYLDGLLQVPGILDDASLQH-FLELEKHL 111          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|566028798|gb|ETI51709.1| (hypothetical protein F443_05056 [Phytophthora parasitica P1569] >gi|567994795|gb|ETL44945.1| hypothetical protein L916_04874 [Phytophthora parasitica] >gi|568024057|gb|ETL98099.1| hypothetical protein L917_04773 [Phytophthora parasitica] >gi|570332513|gb|ETO80461.1| hypothetical protein F444_05105 [Phytophthora parasitica P1976] >gi|570956499|gb|ETP21493.1| hypothetical protein F441_05062 [Phytophthora parasitica CJ01A1] >gi|970663539|gb|KUG00686.1| Serine/threonine-protein kinase Sgk3 [Phytophthora nicotianae])

HSP 1 Score: 77.411 bits (189), Expect = 1.888e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            + A+I  YD        + + ++     W I RRF+DF  LH  L R F       LP K+WFGRF+P FL +R+  LQ+YLD +  +PG L+ +     F E+++HL
Sbjct:    6 VSALITGYDT-VGDHTEFIVEISCNGGLWRISRRFSDFDQLHSRLVRRFGDLIEVSLPEKQWFGRFDPNFLIKRQASLQEYLDGLLQVPGILDDASLQH-FLELEKHL 111          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|570991652|gb|ETP49343.1| (hypothetical protein F442_05123 [Phytophthora parasitica P10297])

HSP 1 Score: 77.411 bits (189), Expect = 1.999e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            + A+I  YD        + + ++     W I RRF+DF  LH  L R F       LP K+WFGRF+P FL +R+  LQ+YLD +  +PG L+ +     F E+++HL
Sbjct:    6 VSALITGYDT-VGDHTEFIVEISCNGGLWRISRRFSDFDQLHSRLVRRFGDLIEVSLPEKQWFGRFDPNFLIKRQASLQEYLDGLLQVPGILDDASLQH-FLELEKHL 111          
BLAST of EWM30419.1 vs. NCBI_GenBank
Match: gi|695416580|ref|XP_009526877.1| (hypothetical protein PHYSODRAFT_255667 [Phytophthora sojae] >gi|348678002|gb|EGZ17819.1| hypothetical protein PHYSODRAFT_255667 [Phytophthora sojae])

HSP 1 Score: 77.0258 bits (188), Expect = 2.421e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MDAIIVKYDQGQASFIRYTILVTLGDQSWSILRRFNDFSHLHEALCRSFPHF-PGRLPPKKWFGRFNPEFLQERKVELQQYLDSVTSLPGFLERSQEGCVFFEVDRHL 107
            + A+I  YD        + + ++     W I RRF+DF  LH  L R F       LP K+WFGRF+P FL +R+  LQ+YLD +  +PG L+ +     F E+++HL
Sbjct:    6 VSALITGYDT-VGDHTEFIVEISCNGGLWRISRRFSDFDQLHSRLVRRFGDLIEVSLPEKQWFGRFDPNFLIKRQASLQEYLDGLLQVPGILDDASLQH-FLELEKHL 111          
The following BLAST results are available for this feature:
BLAST of EWM30419.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113079|gb|EWM30419.1|0.000e+0100.00sorting nexin-16 [Nannochloropsis gaditana][more]
gi|553181384|ref|XP_005853558.1|2.072e-2353.51hypothetical protein NGA_0473010 [Nannochloropsis ... [more]
gi|635365408|emb|CCI46201.1|3.421e-1540.74unnamed protein product [Albugo candida][more]
gi|325181442|emb|CCA15858.1|1.503e-1439.81conserved hypothetical protein [Albugo laibachii N... [more]
gi|1214702054|gb|OWZ14315.1|5.757e-1337.04hypothetical protein PHMEG_00012227 [Phytophthora ... [more]
gi|675187057|ref|XP_008902413.1|1.870e-1237.04hypothetical protein PPTG_09272 [Phytophthora para... [more]
gi|568054485|gb|ETM51265.1|1.888e-1237.04hypothetical protein L914_04877 [Phytophthora para... [more]
gi|566028798|gb|ETI51709.1|1.888e-1237.04hypothetical protein F443_05056 [Phytophthora para... [more]
gi|570991652|gb|ETP49343.1|1.999e-1237.04hypothetical protein F442_05123 [Phytophthora para... [more]
gi|695416580|ref|XP_009526877.1|2.421e-1237.04hypothetical protein PHYSODRAFT_255667 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna279rna279Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications