rna2788, rna2788 (mRNA) Nannochloropsis gaditana

Overview
Namerna2788
Unique Namerna2788
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2376
Alignment locationCM002459.1:1213356..1214033 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100197g2.5173.mrna
Orig protein idgnl|cribi|Naga_100197g2.5173
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1213356..1214033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100197g2gene2668Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2788rna2788-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27897.1cds2780Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2788 ID=rna2788|Name=rna2788|organism=Nannochloropsis gaditana|type=mRNA|length=2376bp
ATGACGAGTTTCGTCAGGATAGTAAAAGGAAGTTTGCCGACAAGAAAGAT
ACCCTCTGCCTTCGTCATTGCAGGGGCACAATCATTTACGAGCAGCTCTT
CTACTGATACAAGCCCAGCAACAAGACGTCACCGTTCTCTCCACCGCCCT
ATAAACGATGCTGCACCAATGGCGGGAACTGTAAGGCGCTACGATAGGCA
TGTCTTCATTCTAGACCCTTTCCGAGGGCACGAAAATTGGCCGACGTACC
TGGAAGAGTCACGTTTTTTGCTCGTAGCTGACTACATGCAAGCTCAGAGA
GCGCTACTAATGGCGGCCCATTCCCGAAGTGGCGAACAGGAAAGAGCATG
GACGCTGAAATTTAATGTCGCTGAGGCATTGAATCACCCGCTCGGCGCGC
CAAGCGATGACGAGGATGCCATAAATGCTTTCAAAGATCGCGGTCTCCAC
ACTATCTTGATCTTCTCTCCTTGCACTCCTTCTCTCGCTGTACGTGGTCT
GACAAAGGCCGACATACCAGCTCTGGTGAAATTGCTGCACTCGGTCGCGG
ATTATCCAACCACCCTACCGACCGCCCTCCCAACGCATGTGGCTGTTCAA
AATCTTGCTGGGAAAGATATCTTTGTGTGTGCTCATGCCTCACGCGATGC
CCGGTGTAAGGCCTGCGGGCCGCCGCTGGTCAAATGGCTGCGAGAGGAGG
TTGACATGAGGGGTAAAGACCAAGTTAGAGTGTGGCCATCCTCACATGTG
GGAGGGCATGCACATGCTGCGAACGCATTGGTATTCCCTGGAGGCGACTG
GTACGGACGGGTGAACAGCAAAGAGAAGGCTAAGATCCTGCTCGAAGCAT
CATCCATGGCTTCCCCTCCTGCCGGTCACGTCCTCCGCGAATCCAACATC
ACTCTTGATCACGTGTTGCGAGAGAATAATGCAATTCGCAAGAGTAAGAT
TGTCTGCACGCTGGGGCCGGCTTGCTGGTCCGTGGAAGGCCTGGGAAAGC
TCATCGACGCGGGTATGAATGTTGCCCGCCTGAACTTCTCCCACGGCGAC
CACGAGGGTCATGGGGCCACCCTGGACCGGCTGCGGGAGGCTCTGGCGAC
CAGGCCCGGGGTGCACGTGGCCGTGATGCTGGACACGAAAGGTCCTGAGA
TCCGCACAGGCTTTCTGGGCAGTGCCAAGACTGTGGAGTACAAGAAGGGG
AGCATCGTGGAGATCGTGACCGACTACTCCATGCCTGGGAACAGCGAAAT
CATCGCCTGCTCCTACTCGGACCTGCCCACGACCACCAAGGTGGGGGCTA
CCATTTTGGTCGCCGACGGGTCCTTGGTGCTGAAAGTGACGGAATTGCGA
TCGTCCTCTGTCATGGCTGAGGTCCAAAACACCGCCGTGATTGGGGAGCG
CAAGAACATGAATTTGCCGGGGGCGATCGTGAACCTCCCCACGTTGACCG
AGAAGGACGTGGCGGATCTCACCGATTTTGGGATCCCGCAGAACGTGGAC
TTCATCGCCGCCTCCTTCGTGCGGAAAGGCTCGGACATCGACTACATTCG
CAGCGTTCTGGGAGAGGAGGGGTCCCACATTAAGATCATCGCCAAGATCG
AGAACCAAGAGGGCTTGCACAACTACGAGGAAATCTTAGACAGGACTGAC
GGCATCATGGTCGCACGCGGTGACCTCGGCATGGAAATCCCGCCGGAGAA
GGTCTTTTTGGGACAGAAAATGATGATCAACAAGGCCAATATCCGCGGCA
AACCCGTCATCACGGCCACGCAGATGCTCGAGTCCATGATCAAAAACCCG
CGGCCGACCCGGGCGGAGTGCACGGACGTGGCCAATGCGGTCTTGGATGG
GACGGATTGCGTCATGCTCTCGGGTGAGACCGCCAACGGGGATTTCCCGA
CTGAAGCGGTCACCATCATGGCCAAGATCTGCCGGGAGGCGGAGAGCGCC
ATGAATTACAACCAGCTCTCCAACACGATGCGGAACACGGTCATGGCCTT
CATGGGCCACATGCCGGCGCCGGAGTCGGTGGCGTCCTCGTCCGTGAAAA
CCGCCTTCGATATCGACGCCAAGATGATCGTGGTGTTGACGGAAACGGGG
AACACAGCGCAATTGATCGCCAAGTATCGTCCTTCCATGCCCATTTTGGC
CTTGACCGCAATCCCAGAGACGGCCCGTTTTGTCCAGGGCGTGGTCAAGA
ACAGCTACTGCGTCGTGATCGGTTCCATGATCGGTACCGAGAGCATCCTC
CTCCGAGCCCTGGACATTGGCCGTCAAAAGGGTTGGGTGGAGAGTGGTGC
GAACGTGGTTTGTGTGCACGGGACTCAGGAGGCCGTGCCCGGGAGCAGCA
ACATGCTTCGGGTCATGATTGCGTGA
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protein sequence of rna2788

>rna2788-protein ID=rna2788-protein|Name=rna2788|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MAFMMCGLHVICVLIVGACLNMEGERVERGATFLRPQELAETQLLMYLEI
CCAHDPQPSGHSTEMRRAIGLENVCLLLLVTNRRAVQEASTSSYGGLWDG
CPPCNYCDDTPRGMGAMLKEKKKSPRRSRSAVFLEAREPTCLFPSSLPSF
FPPPFLSPPSCSPSPFEG
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mRNA from alignment at CM002459.1:1213356..1214033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2788 ID=rna2788|Name=rna2788|organism=Nannochloropsis gaditana|type=mRNA|length=678bp|location=Sequence derived from alignment at CM002459.1:1213356..1214033+ (Nannochloropsis gaditana)
ATGGCTTTTATGATGTGTGGTTTGCATGTGATATGTGTCCTAATTGTGGG
GGCTTGCCTGAAtatggagggggagcgagTGGAAGTGAATCAATTTTGGA
AAAataggggaggggaagggcaggaaaggaaggagaaagagggatcGGGA
GAGAtcggggtgggggcggaacGGAGGACAAGAGCGAAAAGTACAAGCAT
GTGGCGTTGAGAGCGCGGAGCCACTTTCCTCCGACCCCAAGAGCTAGCTG
AAACACAATTATTGATGTATTTAGAGGTGCTTGCCTGACACATCCTGGGA
TGACTGGTGCCTCCAGAGATTTGTTGCGCGCATGACCCTCAGCCCAGCGG
CCATTCGACGGAGATGCGGAGGGCCATAGGACTGGAAAATGTCTGCCTCC
TATTACTCGTGACGAATCGTAGAGCGGTACAAGAAGCTTCCACGAGTTCG
TACGGGGGCCTTTGGGACGGATGCCCCCCATGCAACTATTGTGACGACAC
GCCACGTGGCATGGGCGCGATgttgaaggaaaagaaaaaaagccCCCGAC
GCTCACGCTCCGCTGTCTTCCTCGAGGCCCGTGAGCCGACttgtctcttt
ccttcttccctcccctccttcttcccgcctccctttctctcccctccttc
ctgttcGCCGTCTCCGTTCGAGGGATGA
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Coding sequence (CDS) from alignment at CM002459.1:1213356..1214033+

>rna2788 ID=rna2788|Name=rna2788|organism=Nannochloropsis gaditana|type=CDS|length=1521bp|location=Sequence derived from alignment at CM002459.1:1213356..1214033+ (Nannochloropsis gaditana)
ATGGCTTTTATGATGTGTGGTTTGCATGTGATATGTGTCCTAATTGTGGG
GGCTTGCCTGAAtatggagggggagcgagTGGAACGCGGAGCCACTTTCC
TCCGACCCCAAGAGCTAGCTGAAACACAATTATTGATGTATTTAGAGATT
TGTTGCGCGCATGACCCTCAGCCCAGCGGCCATTCGACGGAGATGCGGAG
GGCCATAGGACTGGAAAATGTCTGCCTCCTATTACTCGTGACGAATCGTA
GAGCGGTACAAGAAGCTTCCACGAGTTCGTACGGGGGCCTTTGGGACGGA
TGCCCCCCATGCAACTATTGTGACGACACGCCACGTGGCATGGGCGCGAT
gttgaaggaaaagaaaaaaagccCCCGACGCTCACGCTCCGCTGTCTTCC
TCGAGGCCCGTGAGCCGACttgtctctttccttcttccctcccctccttc
ttcccgcctccctttctctcccctccttcctgttcGCCGTCTCCGTTCGA
GGGATGAATGGCTTTTATGATGTGTGGTTTGCATGTGATATGTGTCCTAA
TTGTGGGGGCTTGCCTGAAtatggagggggagcgagTGGAACGCGGAGCC
ACTTTCCTCCGACCCCAAGAGCTAGCTGAAACACAATTATTGATGTATTT
AGAGATTTGTTGCGCGCATGACCCTCAGCCCAGCGGCCATTCGACGGAGA
TGCGGAGGGCCATAGGACTGGAAAATGTCTGCCTCCTATTACTCGTGACG
AATCGTAGAGCGGTACAAGAAGCTTCCACGAGTTCGTACGGGGGCCTTTG
GGACGGATGCCCCCCATGCAACTATTGTGACGACACGCCACGTGGCATGG
GCGCGATgttgaaggaaaagaaaaaaagccCCCGACGCTCACGCTCCGCT
GTCTTCCTCGAGGCCCGTGAGCCGACttgtctctttccttcttccctccc
ctccttcttcccgcctccctttctctcccctccttcctgttcGCCGTCTC
CGTTCGAGGGATGAATGGCTTTTATGATGTGTGGTTTGCATGTGATATGT
GTCCTAATTGTGGGGGCTTGCCTGAAtatggagggggagcgagTGGAACG
CGGAGCCACTTTCCTCCGACCCCAAGAGCTAGCTGAAACACAATTATTGA
TGTATTTAGAGATTTGTTGCGCGCATGACCCTCAGCCCAGCGGCCATTCG
ACGGAGATGCGGAGGGCCATAGGACTGGAAAATGTCTGCCTCCTATTACT
CGTGACGAATCGTAGAGCGGTACAAGAAGCTTCCACGAGTTCGTACGGGG
GCCTTTGGGACGGATGCCCCCCATGCAACTATTGTGACGACACGCCACGT
GGCATGGGCGCGATgttgaaggaaaagaaaaaaagccCCCGACGCTCACG
CTCCGCTGTCTTCCTCGAGGCCCGTGAGCCGACttgtctctttccttctt
ccctcccctccttcttcccgcctccctttctctcccctccttcctgttcG
CCGTCTCCGTTCGAGGGATGA
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Synonyms
Publications