EWM27897.1, cds2780 (CDS) Nannochloropsis gaditana

Overview
NameEWM27897.1
Unique Namecds2780
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1213356..1213439 +
Alignment locationCM002459.1:1213569..1213631 +
Alignment locationCM002459.1:1213674..1214033 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27897.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100197g2.5173.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1213356..1213439 +
CM002459.1supercontigCM002459.1:1213569..1213631 +
CM002459.1supercontigCM002459.1:1213674..1214033 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM27897.1 vs. NCBI_GenBank
Match: gi|585110233|gb|EWM27897.1| (hypothetical protein Naga_100197g2 [Nannochloropsis gaditana])

HSP 1 Score: 343.584 bits (880), Expect = 1.217e-119
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MAFMMCGLHVICVLIVGACLNMEGERVERGATFLRPQELAETQLLMYLEICCAHDPQPSGHSTEMRRAIGLENVCLLLLVTNRRAVQEASTSSYGGLWDGCPPCNYCDDTPRGMGAMLKEKKKSPRRSRSAVFLEAREPTCLFPSSLPSFFPPPFLSPPSCSPSPFEG 168
            MAFMMCGLHVICVLIVGACLNMEGERVERGATFLRPQELAETQLLMYLEICCAHDPQPSGHSTEMRRAIGLENVCLLLLVTNRRAVQEASTSSYGGLWDGCPPCNYCDDTPRGMGAMLKEKKKSPRRSRSAVFLEAREPTCLFPSSLPSFFPPPFLSPPSCSPSPFEG
Sbjct:    1 MAFMMCGLHVICVLIVGACLNMEGERVERGATFLRPQELAETQLLMYLEICCAHDPQPSGHSTEMRRAIGLENVCLLLLVTNRRAVQEASTSSYGGLWDGCPPCNYCDDTPRGMGAMLKEKKKSPRRSRSAVFLEAREPTCLFPSSLPSFFPPPFLSPPSCSPSPFEG 168
The following BLAST results are available for this feature:
BLAST of EWM27897.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110233|gb|EWM27897.1|1.217e-119100.00hypothetical protein Naga_100197g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2788rna2788Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications