rna2778, rna2778 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2778
Unique Name	rna2778
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1110
Alignment location	CM002459.1:1179226..1181569 +

Link to JBrowse

Properties


Property Name	Value
Product	Leucine-rich repeat protein
Orig transcript id	gnl\|cribi\|Naga_100338g5.10102.mrna
Orig protein id	gnl\|cribi\|Naga_100338g5.10102
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1179226..1181569 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100338g5	gene2659	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2778	rna2778-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27907.1	cds2770	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1179226..1181569+
coding sequence from alignment at CM002459.1:1179226..1181569+

mRNA sequence

>rna2778 ID=rna2778|Name=rna2778|organism=Nannochloropsis gaditana|type=mRNA|length=1110bp
ATGTGGAAGGCAACAGCTTGGGAAGACCGCTGTACACGTCACCGTTCAAG
CGGGGGGATACTTGAAGCAGGAACACCGTCCTTTATCCAGAGTCTCACAT
GTCCAACCCATTCGCACCGCCCAGGACACGGACGAATCACATCCGGTATG
CCACGACATCGAACCTTGGGGTTGATGACAGCCCTTGTATGGGCGTACGA
GTCGGCGTTCATGCTGCTTCCCAGTCGAGGTTTCCGAGTCCCCTTTTATA
ACCTCCCCAGGCCGCTTTCAGCGCACAAGTCCCCACTTGCCACCGGGAGC
GCTGGTAAGAACTGTGGCATGCACACCATTCTATACGCTCGATTACGAGA
CAGAGGTGACGAAGAGGATGAAATGGAGAGTCTTTTGCGAGCCCTTCTGC
GCGGAGACCGTGGCAGCATGGAGGACTACGAACAACGACGGCGACTGGAA
GCGGTTCGACAAGAAGAAGCGTCGCAGGGCCTGTGGGGAAAAGCCAAAAG
CATTGTGCGCAGAGTGGCATCAAAAGCTCCCCTTTTGTTAATCGCACCCG
TTGTTTTATGGGCGGGGTTCCAATTGAGTGGGGTGGCCGTATCCCTTGGC
TTGACTTCTGCACTGGTTTTCGCCAGCTTTGCCCTCCCACCCATGTTTGC
ATTGACGTTCCTGATGCCGCTGGTTGTCCTCATGCTTGTTGGGACCTTTG
TCTTCCCAATCCTCCCTTTCGCAATCCTTGGCTTTTTGCCGGGTTTTGTT
TTGCTGCCCCTCGTCTTCTTGGGTGGTGTTTTTATGCTGACTCAATTCGC
CGGCAGCAGCAGAAGCAGCAGCAGTACGTGGGGTTTGACGGGCTTCGACG
AAGAGTCTTGGCCATGGGGTGGTAAAACGTTCACGTGGGTCACCCTCGAT
GCGGATGAGGGGATGGAGGGGAGGCGCAAGGACCAGTCCAACCGGGGGAG
GAACGATGGGATCATTGACGTGACTGCCACGGAGGCCGACGACGACGAGG
AGGACGGAGCATATGCCGGAGTGGGCGAGGTTGCGTGTCTTTTGGGGCGG
TTCCCGGTGTTTCTGAATCGTGTGACGGTGGGAGGGACGGAAGTGACTGA
TTTGACGTAG

protein sequence of rna2778

>rna2778-protein ID=rna2778-protein|Name=rna2778|organism=Nannochloropsis gaditana|type=polypeptide|length=747bp
MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDIL
FVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYS
LNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSIL
LTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMR
ETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQP
APLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDC
PPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDL
IGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDG
RWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRT
QQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARG
WCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAP
PTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPL
KRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWR
PVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQ
LELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP

mRNA from alignment at CM002459.1:1179226..1181569+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2778 ID=rna2778|Name=rna2778|organism=Nannochloropsis gaditana|type=mRNA|length=2344bp|location=Sequence derived from alignment at CM002459.1:1179226..1181569+ (Nannochloropsis gaditana)
ATGGGTCCGATGAAGAGAAACATTACTGAGGTCGCTAGCGACCATGGAGT
TCACGGGAAATGCGTTACACCTCCTGAGATCTGGTCAAATCGGGcagcag
ggggaaagaaggaataCCTCACATGTCTGCCGCAAGGAACAGACATTTTG
TTTGTCAGTTTCTTGAGCGGATCCCAGGCCCTGTATTGCCTCGCATGCAG
TCACCGAAAGTTGGCTAAGTATGTGTGTTATGTCGACAGGCTGAATAATC
TTCAGAAAGGCCGATTGAAAGCGCTTGCTCGTCATTTTAAGTCTTACTCT
TTGAACGGTGCTCGCTATCATGACCAACATATCTGCAACGGTCCTGCCAA
ATATACCGCGCGAGAGCTTCCGCTCCTTAAAAAGCTACACTTCTCGGGGC
AAATGGAGTGGAACTCTgggctcctccgcctttttctcAATTCGATTCTA
TTGACACCCGGTACCGCTTGCGTCAATATGCCGACTTTGGAGTGTCTTGA
TTTATCGGAGACAGTCATGACCTCTGTTGtccttcatcttctccttgaaA
AGATTGCAAAGCGGCCTCATCTGCATACATTGCTCCTGCCCGACATGCGG
GAGACTGCGTACGGAACGGCGAATTTCGTCCGATCCATCCCTTTCATCCG
CGAAGTTGGTAATCGCCACGGTGTTGGCCTTCACTACCTTCGAGAAATAA
TTGACAAGCTCCGGCTCGGTGAGCATCATCATGAGGGGCTTCTACAGCCA
GCGCCGCTGGAAAAGCTTGACTTCGCCTgtaggagaggggaggtgaagCT
CGGGCAATACAGGGTAGCATGTCGGACACTACTCGATATGGTCAAGCTGT
TAGGAGCCAGGGCTTTGTTTCCCAGGTTACGGGTACGTAAATCCTGAAGA
AAAggcatggagaaggcggtgccTTGCCAGGCTCGGTCCTACGCGAATTC
TCACCGCATTCCCGATCTTATTGGCCGTCCAGGTCTTGCGCCTGGACTGC
CCTCCTTTGGATTTCAAGGGACTATATAGAGACGTTTCAATAACGCTGTG
TAAAAATGCCGGACCGTATTTCATGAGGGGTGCGGTGGCGGGTTTAGAGG
AGCTGTGCTTGCGAAACACGGAGAACATGGGCATGACAGCTTCAGACCTC
ATTGGTATGACGAAGGCAATGGCGAGGGGTCCCGTTGCAAATTTCAAGGC
GATGCAAGTACTTCGTCTTCATGGCTTTGTCAGCGGTGAGTTtcaccccg
ccctcgccctggtCACGGCATTTACCGGCATGCGCAATCCCCGCGACGGC
CGATGGCACAGCTTGCGTATCTTAGACCTGACCAATAACCTCCTTGGGGA
TATTGCCTTAGAGACGCTGGCGGAGAGCATCGGAAAGGGAGTCTTTGGGC
CGGCGCTGCAGGAGTTGGACCTCTCCCTGTCCCAGGGCGTGCGTCGCACG
CAGCAAACCACGATAGGCCCCGCCGGCATCCGGGCGCTGGTCATGGCACT
CAAGGCTCGtggggacgcgggggaggagatctGTCTCAAACGCTTGCACC
taggggggcaggagatcGGGGATGAGGGGGTGGCGGAGCTGGCGAGAGGC
TGGTGTTTACGAGGCTTTTGCTGTTGgaaggctttggaggaaGTGAAACT
GAACGAGAACGGCATCACGGACGAAGGATTTTGGCATTTGATGGCGGGGG
TGACCCCgtgcgtggaagaggagatggaagagtcggaggaggaagccccc
CCGACATCGCTTCGAAGAGGGAAATGGCCAGTCCTTCGACGCCTGGTTCT
GGAGCGAAATTTGATCATGGGCGGTGAGGATCTCTGCAAACGTGTCCGCT
CGTTCTTTGCGTGCCAGATGCTGGATGCTTGTCCGACGGCACTTCCGCTC
AAGCGTTtaaatttggcgcgaaaccCATTGACGGCTGAAGGGCTTGGAAC
CTTTCTCTCTTGCTTAGGCCCTTCGCTGCGTGAGCTGAAATTGGGGGGAA
ACACTAACAAATCGAATTACAACAACGCCATGCTTCGCGAGTTGTGGAGA
CCTGTCTGCGATGCTTTCGAATGGAAAAACCTCGCACGGCTTTGGGATGT
GCGCCGGCTGGATCTCCGAAAGTTGGAAATGtcgcgggaggtggtggagg
aactGGCGAGGGTCttgcaggaagggaggcagctgACGCGTCTGTGTCAG
CTGGAATTGAGCCTCGCGGACAttcggagggagcgagaTGTGGCGGTGAT
AGTGAACGATCTCAAGATTGCGAGGGGCCCGCGCCTTGTTTGGGATGTGT
TGACGATCAATTACCAGACATGGATTGAGCTGCGGGAACCATGA

Coding sequence (CDS) from alignment at CM002459.1:1179226..1181569+

>rna2778 ID=rna2778|Name=rna2778|organism=Nannochloropsis gaditana|type=CDS|length=4488bp|location=Sequence derived from alignment at CM002459.1:1179226..1181569+ (Nannochloropsis gaditana)
ATGGGTCCGATGAAGAGAAACATTACTGAGGTCGCTAGCGACCATGGAGT
TCACGGGAAATGCGTTACACCTCCTGAGATCTGGTCAAATCGGGcagcag
ggggaaagaaggaataCCTCACATGTCTGCCGCAAGGAACAGACATTTTG
TTTGTCAGTTTCTTGAGCGGATCCCAGGCCCTGTATTGCCTCGCATGCAG
TCACCGAAAGTTGGCTAAGTATGTGTGTTATGTCGACAGGCTGAATAATC
TTCAGAAAGGCCGATTGAAAGCGCTTGCTCGTCATTTTAAGTCTTACTCT
TTGAACGGTGCTCGCTATCATGACCAACATATCTGCAACGGTCCTGCCAA
ATATACCGCGCGAGAGCTTCCGCTCCTTAAAAAGCTACACTTCTCGGGGC
AAATGGAGTGGAACTCTgggctcctccgcctttttctcAATTCGATTCTA
TTGACACCCGGTACCGCTTGCGTCAATATGCCGACTTTGGAGTGTCTTGA
TTTATCGGAGACAGTCATGACCTCTGTTGtccttcatcttctccttgaaA
AGATTGCAAAGCGGCCTCATCTGCATACATTGCTCCTGCCCGACATGCGG
GAGACTGCGTACGGAACGGCGAATTTCGTCCGATCCATCCCTTTCATCCG
CGAAGTTGGTAATCGCCACGGTGTTGGCCTTCACTACCTTCGAGAAATAA
TTGACAAGCTCCGGCTCGGTGAGCATCATCATGAGGGGCTTCTACAGCCA
GCGCCGCTGGAAAAGCTTGACTTCGCCTgtaggagaggggaggtgaagCT
CGGGCAATACAGGGTAGCATGTCGGACACTACTCGATATGGTCAAGCTGT
TAGGAGCCAGGGCTTTGTTTCCCAGGTTACGGGTCTTGCGCCTGGACTGC
CCTCCTTTGGATTTCAAGGGACTATATAGAGACGTTTCAATAACGCTGTG
TAAAAATGCCGGACCGTATTTCATGAGGGGTGCGGTGGCGGGTTTAGAGG
AGCTGTGCTTGCGAAACACGGAGAACATGGGCATGACAGCTTCAGACCTC
ATTGGTATGACGAAGGCAATGGCGAGGGGTCCCGTTGCAAATTTCAAGGC
GATGCAAGTACTTCGTCTTCATGGCTTTGTCAGCGGTGAGTTtcaccccg
ccctcgccctggtCACGGCATTTACCGGCATGCGCAATCCCCGCGACGGC
CGATGGCACAGCTTGCGTATCTTAGACCTGACCAATAACCTCCTTGGGGA
TATTGCCTTAGAGACGCTGGCGGAGAGCATCGGAAAGGGAGTCTTTGGGC
CGGCGCTGCAGGAGTTGGACCTCTCCCTGTCCCAGGGCGTGCGTCGCACG
CAGCAAACCACGATAGGCCCCGCCGGCATCCGGGCGCTGGTCATGGCACT
CAAGGCTCGtggggacgcgggggaggagatctGTCTCAAACGCTTGCACC
taggggggcaggagatcGGGGATGAGGGGGTGGCGGAGCTGGCGAGAGGC
TGGTGTTTACGAGGCTTTTGCTGTTGgaaggctttggaggaaGTGAAACT
GAACGAGAACGGCATCACGGACGAAGGATTTTGGCATTTGATGGCGGGGG
TGACCCCgtgcgtggaagaggagatggaagagtcggaggaggaagccccc
CCGACATCGCTTCGAAGAGGGAAATGGCCAGTCCTTCGACGCCTGGTTCT
GGAGCGAAATTTGATCATGGGCGGTGAGGATCTCTGCAAACGTGTCCGCT
CGTTCTTTGCGTGCCAGATGCTGGATGCTTGTCCGACGGCACTTCCGCTC
AAGCGTTtaaatttggcgcgaaaccCATTGACGGCTGAAGGGCTTGGAAC
CTTTCTCTCTTGCTTAGGCCCTTCGCTGCGTGAGCTGAAATTGGGGGGAA
ACACTAACAAATCGAATTACAACAACGCCATGCTTCGCGAGTTGTGGAGA
CCTGTCTGCGATGCTTTCGAATGGAAAAACCTCGCACGGCTTTGGGATGT
GCGCCGGCTGGATCTCCGAAAGTTGGAAATGtcgcgggaggtggtggagg
aactGGCGAGGGTCttgcaggaagggaggcagctgACGCGTCTGTGTCAG
CTGGAATTGAGCCTCGCGGACAttcggagggagcgagaTGTGGCGGTGAT
AGTGAACGATCTCAAGATTGCGAGGGGCCCGCGCCTTGTTTGGGATGTGT
TGACGATCAATTACCAGACATGGATTGAGCTGCGGGAACCATGAATGGGT
CCGATGAAGAGAAACATTACTGAGGTCGCTAGCGACCATGGAGTTCACGG
GAAATGCGTTACACCTCCTGAGATCTGGTCAAATCGGGcagcagggggaa
agaaggaataCCTCACATGTCTGCCGCAAGGAACAGACATTTTGTTTGTC
AGTTTCTTGAGCGGATCCCAGGCCCTGTATTGCCTCGCATGCAGTCACCG
AAAGTTGGCTAAGTATGTGTGTTATGTCGACAGGCTGAATAATCTTCAGA
AAGGCCGATTGAAAGCGCTTGCTCGTCATTTTAAGTCTTACTCTTTGAAC
GGTGCTCGCTATCATGACCAACATATCTGCAACGGTCCTGCCAAATATAC
CGCGCGAGAGCTTCCGCTCCTTAAAAAGCTACACTTCTCGGGGCAAATGG
AGTGGAACTCTgggctcctccgcctttttctcAATTCGATTCTATTGACA
CCCGGTACCGCTTGCGTCAATATGCCGACTTTGGAGTGTCTTGATTTATC
GGAGACAGTCATGACCTCTGTTGtccttcatcttctccttgaaAAGATTG
CAAAGCGGCCTCATCTGCATACATTGCTCCTGCCCGACATGCGGGAGACT
GCGTACGGAACGGCGAATTTCGTCCGATCCATCCCTTTCATCCGCGAAGT
TGGTAATCGCCACGGTGTTGGCCTTCACTACCTTCGAGAAATAATTGACA
AGCTCCGGCTCGGTGAGCATCATCATGAGGGGCTTCTACAGCCAGCGCCG
CTGGAAAAGCTTGACTTCGCCTgtaggagaggggaggtgaagCTCGGGCA
ATACAGGGTAGCATGTCGGACACTACTCGATATGGTCAAGCTGTTAGGAG
CCAGGGCTTTGTTTCCCAGGTTACGGGTCTTGCGCCTGGACTGCCCTCCT
TTGGATTTCAAGGGACTATATAGAGACGTTTCAATAACGCTGTGTAAAAA
TGCCGGACCGTATTTCATGAGGGGTGCGGTGGCGGGTTTAGAGGAGCTGT
GCTTGCGAAACACGGAGAACATGGGCATGACAGCTTCAGACCTCATTGGT
ATGACGAAGGCAATGGCGAGGGGTCCCGTTGCAAATTTCAAGGCGATGCA
AGTACTTCGTCTTCATGGCTTTGTCAGCGGTGAGTTtcaccccgccctcg
ccctggtCACGGCATTTACCGGCATGCGCAATCCCCGCGACGGCCGATGG
CACAGCTTGCGTATCTTAGACCTGACCAATAACCTCCTTGGGGATATTGC
CTTAGAGACGCTGGCGGAGAGCATCGGAAAGGGAGTCTTTGGGCCGGCGC
TGCAGGAGTTGGACCTCTCCCTGTCCCAGGGCGTGCGTCGCACGCAGCAA
ACCACGATAGGCCCCGCCGGCATCCGGGCGCTGGTCATGGCACTCAAGGC
TCGtggggacgcgggggaggagatctGTCTCAAACGCTTGCACCtagggg
ggcaggagatcGGGGATGAGGGGGTGGCGGAGCTGGCGAGAGGCTGGTGT
TTACGAGGCTTTTGCTGTTGgaaggctttggaggaaGTGAAACTGAACGA
GAACGGCATCACGGACGAAGGATTTTGGCATTTGATGGCGGGGGTGACCC
CgtgcgtggaagaggagatggaagagtcggaggaggaagcccccCCGACA
TCGCTTCGAAGAGGGAAATGGCCAGTCCTTCGACGCCTGGTTCTGGAGCG
AAATTTGATCATGGGCGGTGAGGATCTCTGCAAACGTGTCCGCTCGTTCT
TTGCGTGCCAGATGCTGGATGCTTGTCCGACGGCACTTCCGCTCAAGCGT
TtaaatttggcgcgaaaccCATTGACGGCTGAAGGGCTTGGAACCTTTCT
CTCTTGCTTAGGCCCTTCGCTGCGTGAGCTGAAATTGGGGGGAAACACTA
ACAAATCGAATTACAACAACGCCATGCTTCGCGAGTTGTGGAGACCTGTC
TGCGATGCTTTCGAATGGAAAAACCTCGCACGGCTTTGGGATGTGCGCCG
GCTGGATCTCCGAAAGTTGGAAATGtcgcgggaggtggtggaggaactGG
CGAGGGTCttgcaggaagggaggcagctgACGCGTCTGTGTCAGCTGGAA
TTGAGCCTCGCGGACAttcggagggagcgagaTGTGGCGGTGATAGTGAA
CGATCTCAAGATTGCGAGGGGCCCGCGCCTTGTTTGGGATGTGTTGACGA
TCAATTACCAGACATGGATTGAGCTGCGGGAACCATGA

Synonyms

Publications