EWM27907.1, cds2770 (CDS) Nannochloropsis gaditana

Overview
NameEWM27907.1
Unique Namecds2770
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1179226..1180107 +
Alignment locationCM002459.1:1180208..1181569 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27907.1
ProductLeucine-rich repeat protein
Orig transcript idgnl|cribi|Naga_100338g5.10102.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1179226..1180107 +
CM002459.1supercontigCM002459.1:1180208..1181569 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR003590Leu-rich_rpt_RNase_inh_sub-typ
Homology
[Close]
BLAST of EWM27907.1 vs. NCBI_GenBank
Match: gi|585110245|gb|EWM27907.1| (Leucine-rich repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 1524.61 bits (3946), Expect = 0.000e+0
Identity = 747/747 (100.00%), Postives = 747/747 (100.00%), Query Frame = 0 
Query:    1 MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP 747
            MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP
Sbjct:    1 MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP 747
[Close]
BLAST of EWM27907.1 vs. NCBI_GenBank
Match: gi|553188055|ref|XP_005854727.1| (hypothetical protein NGA_0363900 [Nannochloropsis gaditana CCMP526] >gi|422294330|gb|EKU21630.1| hypothetical protein NGA_0363900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1520.75 bits (3936), Expect = 0.000e+0
Identity = 746/747 (99.87%), Postives = 746/747 (99.87%), Query Frame = 0 
Query:    1 MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP 747
            MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFH ALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP
Sbjct:    1 MGPMKRNITEVASDHGVHGKCVTPPEIWSNRAAGGKKEYLTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPPLDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHLALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEWKNLARLWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTINYQTWIELREP 747
[Close]
BLAST of EWM27907.1 vs. NCBI_GenBank
Match: gi|551610952|ref|XP_005786574.1| (hypothetical protein EMIHUDRAFT_228803 [Emiliania huxleyi CCMP1516] >gi|485639874|gb|EOD34145.1| hypothetical protein EMIHUDRAFT_228803 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 62.003 bits (149), Expect = 5.570e-7
Identity = 62/187 (33.16%), Postives = 85/187 (45.45%), Query Frame = 0 
Query:  398 RDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKARGDAGEEICLKRLHLGGQEIGDEG----VAELARGWCLRGFCCWKALEEVKLNENGITDEGFWHLMAGVTPCVEEEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCK 580
            ++G    L+ L+L++N + D   +TLA +IGK    P L+ELDL+ ++         IG  G +AL  AL   G A     L++L+L   EIGDEG    VA L  G   R       LEE+ L  N I DEG   L A +                    + G  P L  L L+ N I  G++ CK
Sbjct:   53 KEGAAPLLKQLNLSSNEIDDEGCKTLAATIGKEGAAPLLEELDLTCNK---------IGNVGCKALAAALCKEGAAPR---LEKLYLRENEIGDEGCKALVATLKEGAAPR-------LEELDLTRNKIGDEGCRALAAALG-------------------KEGAAPRLEELCLDGNQI--GDEGCK 199
The following BLAST results are available for this feature:
BLAST of EWM27907.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110245|gb|EWM27907.1|0.000e+0100.00Leucine-rich repeat protein [Nannochloropsis gadit... [more]
gi|553188055|ref|XP_005854727.1|0.000e+099.87hypothetical protein NGA_0363900 [Nannochloropsis ... [more]
gi|551610952|ref|XP_005786574.1|5.570e-733.16hypothetical protein EMIHUDRAFT_228803 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2778rna2778Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications