rna2773, rna2773 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2773
Unique Name	rna2773
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1778
Alignment location	CM002459.1:1168220..1169910 +

Link to JBrowse

Properties


Property Name	Value
Product	chloride channel family
Orig transcript id	gnl\|cribi\|Naga_100267g1.4724.mrna
Orig protein id	gnl\|cribi\|Naga_100267g1.4724
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1168220..1169910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100267g1	gene2654	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2773	rna2773-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27911.1	cds2765	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1168220..1169910+
coding sequence from alignment at CM002459.1:1168220..1169910+

mRNA sequence

>rna2773 ID=rna2773|Name=rna2773|organism=Nannochloropsis gaditana|type=mRNA|length=1778bp
CCCCCTCCTTTGAGAGCCCCAAAAAGTACTTAACGACGATATGAACACAC
ATTTCTACCCAGGAATCCATTGAAAGCGCCCTGGTGAGGCGTTGCTTGGC
TTTTCGCATTCCTTCATCACTTTAAAGGCACAGGATTCTTGTCAATATTC
CCCGTCGGATAATCGAGGCAGGTGGACAGAGACGGAGTGAAGGCCATTGG
AAACAGAACCATGGCTGCGAATGCGGGCGCTGGCACAAAGCTTTCGTCTG
CTCTCACCAAAAGCACGACAGGCTATGTCTGGCATGAACGGTACATGTGG
CATCACGCCGGCAAATATACTTGGAATGAATGGATCCAACCAACGCGACA
CTTTGAATCTCCGGAGTCGAAACGCCGCCTGCACAACTTGTTGGATGCAA
GTGGTCTGCTCGACTGCCTGGTCCGCGTCCCCCCGCGCTTGGCTAGCGTG
GAGGAACTCACCCGTTTCCACACCCTGGAGTACGTGGGCAAAATCCAAAG
CCTGAGTCGAGCCCAGGGAGGAGAAGCGGGGGACTTTGCCACATTTGGCC
CCGGATCGTACGAAATTGCCTGTCTGGCAGTGGGCGGGGTGTTGAACGCC
ATCGACGCGGTTGTCACGGGCCGGACGGACACGGGCGACAAAGTCCGAAA
CGCTTACTGTTTGGCCCGACCCCCGGGGCATCATGCCGAAAAAGACCGAG
GGATGGGCTTTTGTCTCTTCAACAACGTGGCTCTGGGGGCGATGCACGCC
CGGGTCAAACAAGGGCTGAAGCGCGTGGCCATCGTCGACTATGATGTGCA
CCATGGGAATGGCACTCAGCAAGCTTTCTACGAGGACGAGGCAGTACTTT
TTATCTCCATCCACCAAGACAGCAACTATCCGGCGCACACAGGTTACGTG
GAAGAGAATGGGACCGGGAAGGGGGAGGGCACCACCATCAACATCCCCCT
CCCCCCCGGGAGCGGCTCTGGCGCCTACTTCGAGGCCTTTGACCGAGTCA
TCCTCCCCGCTGTCCGGGCCTTCGCTCCTGAGCTCCTCTTGGTCTCCTCC
GGGTATGATGCCGGCTACCTCGATCCCCTCGCCACCATGATGCTTTCCTC
GGAGCACTTCCGAACCCTGGGGCAAAAACTGAACGGGCTGGCGGAGGACG
TGTGCGACGGGAGGATCGTCTACGTGCACGAGGGCGGGTATTCGGACCTG
TACGTGCCGTTCTGCGGGCATGCGATCGTGGAGGAACTGACAAAGAGACG
GACTGGAGTGCGAGATTGCATGCTAACGGATGTCCACCAGTGGGGGTACC
AAGAGCTGCAGCCGCACCAGGATGCCGTAATCAAGAAATGCGAGGCGCTG
GTGACGGCCCTGAAGCGGCGGATGGCAGGAATGAAATGATTTTGTAGGCA
TGACACCAAGCTTTCCCAATAGGACCAGACCAAGGTAGCCGACATTTCTT
GTGCGCAATTTTCGATGGTTGGAGGGGAGATGCGTGTTGAGTTTATGCCA
ATGAAATTAGCAACCCTACGAGACTCGACGTGGGAGGCACGAGATACTGG
GGCTGCAGCACGAAGTACACCGAACGCTTTTATTCCTGCCTCCCAAATGA
TGGGCAAACGAACAAGGACACACTTTTTCTCAAAGAAAACAAATGATTAA
TGCGATTTCGCGTGCAGCTCCGGTGTTGGGTTTTCAATGAACTAAACCGC
CTTCGATTTGCTTTGAGGTCGGTTTATCACGATCATGTTCCTGCCCACTG
ATAAATGCAAACCAAGAATACTCGTACC

protein sequence of rna2773

>rna2773-protein ID=rna2773-protein|Name=rna2773|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVS
VWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIK
TQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPH
LDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDS
EVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYT
TQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWA
EPVAAGSGIPEIKAFLNGVSLPR

mRNA from alignment at CM002459.1:1168220..1169910+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2773 ID=rna2773|Name=rna2773|organism=Nannochloropsis gaditana|type=mRNA|length=1691bp|location=Sequence derived from alignment at CM002459.1:1168220..1169910+ (Nannochloropsis gaditana)
CACCACAGGGCGGACTATGGATGACGGGGACCCGCTCTCGCATCCTGCCA
TTCAGCTGCAAgtgtctccccccccgtctgcCGCTAAggggagaagcagc
agcaacagcagcaacagtaGCAGTGGCAGTGGCAGTAGTTTCAGCAGCCA
TGCCAGCACAGTCAGCGTTTGGCGAcgtcaacaacaacaacaaccgagac
agcagcagcagcagcagcagcgtgtGACACCGTCTCCTGAGTCGGGTCTC
GGGGCGGTGGATCGAACAGTggggggcggagaagcaGATACGACAACAGC
CCCCACGGCGATCAAGACACAGCACAGTAGCGATGGCGGACAGGAaacag
aggcggaggaggtatGTACGTGTCGAGAGGTCGAAAACCTTCAAGCAAAG
CGTGATGGACACGGAACGAGCTTCCCACCACAAAGGCCCAGGGGGCTGGC
AACTCGATCGATGCCAGGAGCCCTAACCTCCACCATCATGCAAATCCTCT
TTTCCACTTTTGAAAGGCACCCTTCTTAGCCAACGGGTCGACTTCAACGG
CCAGAAAGAAACGCACGCCGCGGGGTCCACCCTTCCAGGTCCAGCACCAa
gagcccctcctccttccccacctaGACACAACGCAAGGCGCCGCCGGCGC
TGCCTTCCAGCAAGAGATGGGGAAGCTGAGCAAATACATTGATCCAGACC
GGCATGTGGAGGTGAgtgaggcgggggggaaggggaaatgcCACTGGCAG
AGGTATAATAACGGCAAGAGATGCATGTGGCGATGTCgtgaggaggatgt
ggaagggGTAGCAAGGAGGCCTCCTCAAATGAAGGAGCGATAAAGCCCTA
ATCCTCACCCCTTGTGTCCTTCTGCATCCAAAAAGCGGGGTCCCTACCAC
GGGAAATCGTACCCAGACTCCTTGACGTACGAGCCGGAGGACAGCGAGGT
GTGGCGCACGCAtgaggtagggagggcgggagggagggcgggcggaagga
ggggaggaaaggcgaaCAGCGCGTATCTCACGCTTTCTTTTGGTCCCAAT
GATGCCTCGGTCGGACAGCTACAAAGGGTCCATAGAGAGCAGAGTCAATT
CTGGACGACGGGCAAAAAACGGTACGTAGGGCGCCCCCGCCCAAAGTGTG
GAATGTAACGGGCGCGTAACGGATTTTTGAACATGATAGAActgcccacc
tccttcaaTTCTCATGAGGTACCTCGCtcatgcccccccttcctccttct
ttcctccccagcGCGGTCAAGCGCTGGCTCCTTACGGCACTGACCGGCGT
CCTGATTGGCCTCCTCGGTGTGGCGATGACGTACACCACGCAACGGCTCG
TCCGTTTCAAGCTCGGAACCGTTACACGTAGGTTTCTGCAAAGTTATTTA
TAGGCAATCCTTCTTCCCAGGCTATGGCCTTACTTCCACgcgtccctttc
cttccttccttctctccctccctccctccctccctccctccctccctccc
tccctccaggcctcttgcaggaggaagtggcCGGGACCCGTCTTCCcggc
gcctccttcttctcctacCTCGGTCTGAACCTCCTGTACGTCCTCATCGC
CAATGCTGCGGTCTGGGCGGAACCTGTTGCGGCCGGGAGCGGCATTCCCG
AGATCAAAGCCTTCCTGAACGGCGTCAGCCTCCCGAGGtaa

Coding sequence (CDS) from alignment at CM002459.1:1168220..1169910+

>rna2773 ID=rna2773|Name=rna2773|organism=Nannochloropsis gaditana|type=CDS|length=5832bp|location=Sequence derived from alignment at CM002459.1:1168220..1169910+ (Nannochloropsis gaditana)
ATGGATGACGGGGACCCGCTCTCGCATCCTGCCATTCAGCTGCAAgtgtc
tccccccccgtctgcCGCTAAggggagaagcagcagcaacagcagcaaca
gtaGCAGTGGCAGTGGCAGTAGTTTCAGCAGCCATGCCAGCACAGTCAGC
GTTTGGCGAcgtcaacaacaacaacaaccgagacagcagcagcagcagca
gcagcgtgtGACACCGTCTCCTGAGTCGGGTCTCGGGGCGGTGGATCGAA
CAGTggggggcggagaagcaGATACGACAACAGCCCCCACGGCGATCAAG
ACACAGCACAGTAGCGATGGCGGACAGGAaacagaggcggaggagGCACC
CTTCTTAGCCAACGGGTCGACTTCAACGGCCAGAAAGAAACGCACGCCGC
GGGGTCCACCCTTCCAGGTCCAGCACCAagagcccctcctccttccccac
ctaGACACAACGCAAGGCGCCGCCGGCGCTGCCTTCCAGCAAGAGATGGG
GAAGCTGAGCAAATACATTGATCCAGACCGGCATGTGGAGCGGGGTCCCT
ACCACGGGAAATCGTACCCAGACTCCTTGACGTACGAGCCGGAGGACAGC
GAGGTGTGGCGCACGCAtgagCTACAAAGGGTCCATAGAGAGCAGAGTCA
ATTCTGGACGACGGGCAAAAAACGcGCGGTCAAGCGCTGGCTCCTTACGG
CACTGACCGGCGTCCTGATTGGCCTCCTCGGTGTGGCGATGACGTACACC
ACGCAACGGCTCGTCCGTTTCAAGCTCGGAACCGTTACACgcctcttgca
ggaggaagtggcCGGGACCCGTCTTCCcggcgcctccttcttctcctacC
TCGGTCTGAACCTCCTGTACGTCCTCATCGCCAATGCTGCGGTCTGGGCG
GAACCTGTTGCGGCCGGGAGCGGCATTCCCGAGATCAAAGCCTTCCTGAA
CGGCGTCAGCCTCCCGAGGtaaATGGATGACGGGGACCCGCTCTCGCATC
CTGCCATTCAGCTGCAAgtgtctccccccccgtctgcCGCTAAggggaga
agcagcagcaacagcagcaacagtaGCAGTGGCAGTGGCAGTAGTTTCAG
CAGCCATGCCAGCACAGTCAGCGTTTGGCGAcgtcaacaacaacaacaac
cgagacagcagcagcagcagcagcagcgtgtGACACCGTCTCCTGAGTCG
GGTCTCGGGGCGGTGGATCGAACAGTggggggcggagaagcaGATACGAC
AACAGCCCCCACGGCGATCAAGACACAGCACAGTAGCGATGGCGGACAGG
AaacagaggcggaggagGCACCCTTCTTAGCCAACGGGTCGACTTCAACG
GCCAGAAAGAAACGCACGCCGCGGGGTCCACCCTTCCAGGTCCAGCACCA
agagcccctcctccttccccacctaGACACAACGCAAGGCGCCGCCGGCG
CTGCCTTCCAGCAAGAGATGGGGAAGCTGAGCAAATACATTGATCCAGAC
CGGCATGTGGAGCGGGGTCCCTACCACGGGAAATCGTACCCAGACTCCTT
GACGTACGAGCCGGAGGACAGCGAGGTGTGGCGCACGCAtgagCTACAAA
GGGTCCATAGAGAGCAGAGTCAATTCTGGACGACGGGCAAAAAACGcGCG
GTCAAGCGCTGGCTCCTTACGGCACTGACCGGCGTCCTGATTGGCCTCCT
CGGTGTGGCGATGACGTACACCACGCAACGGCTCGTCCGTTTCAAGCTCG
GAACCGTTACACgcctcttgcaggaggaagtggcCGGGACCCGTCTTCCc
ggcgcctccttcttctcctacCTCGGTCTGAACCTCCTGTACGTCCTCAT
CGCCAATGCTGCGGTCTGGGCGGAACCTGTTGCGGCCGGGAGCGGCATTC
CCGAGATCAAAGCCTTCCTGAACGGCGTCAGCCTCCCGAGGtaaATGGAT
GACGGGGACCCGCTCTCGCATCCTGCCATTCAGCTGCAAgtgtctccccc
cccgtctgcCGCTAAggggagaagcagcagcaacagcagcaacagtaGCA
GTGGCAGTGGCAGTAGTTTCAGCAGCCATGCCAGCACAGTCAGCGTTTGG
CGAcgtcaacaacaacaacaaccgagacagcagcagcagcagcagcagcg
tgtGACACCGTCTCCTGAGTCGGGTCTCGGGGCGGTGGATCGAACAGTgg
ggggcggagaagcaGATACGACAACAGCCCCCACGGCGATCAAGACACAG
CACAGTAGCGATGGCGGACAGGAaacagaggcggaggagGCACCCTTCTT
AGCCAACGGGTCGACTTCAACGGCCAGAAAGAAACGCACGCCGCGGGGTC
CACCCTTCCAGGTCCAGCACCAagagcccctcctccttccccacctaGAC
ACAACGCAAGGCGCCGCCGGCGCTGCCTTCCAGCAAGAGATGGGGAAGCT
GAGCAAATACATTGATCCAGACCGGCATGTGGAGCGGGGTCCCTACCACG
GGAAATCGTACCCAGACTCCTTGACGTACGAGCCGGAGGACAGCGAGGTG
TGGCGCACGCAtgagCTACAAAGGGTCCATAGAGAGCAGAGTCAATTCTG
GACGACGGGCAAAAAACGcGCGGTCAAGCGCTGGCTCCTTACGGCACTGA
CCGGCGTCCTGATTGGCCTCCTCGGTGTGGCGATGACGTACACCACGCAA
CGGCTCGTCCGTTTCAAGCTCGGAACCGTTACACgcctcttgcaggagga
agtggcCGGGACCCGTCTTCCcggcgcctccttcttctcctacCTCGGTC
TGAACCTCCTGTACGTCCTCATCGCCAATGCTGCGGTCTGGGCGGAACCT
GTTGCGGCCGGGAGCGGCATTCCCGAGATCAAAGCCTTCCTGAACGGCGT
CAGCCTCCCGAGGtaaATGGATGACGGGGACCCGCTCTCGCATCCTGCCA
TTCAGCTGCAAgtgtctccccccccgtctgcCGCTAAggggagaagcagc
agcaacagcagcaacagtaGCAGTGGCAGTGGCAGTAGTTTCAGCAGCCA
TGCCAGCACAGTCAGCGTTTGGCGAcgtcaacaacaacaacaaccgagac
agcagcagcagcagcagcagcgtgtGACACCGTCTCCTGAGTCGGGTCTC
GGGGCGGTGGATCGAACAGTggggggcggagaagcaGATACGACAACAGC
CCCCACGGCGATCAAGACACAGCACAGTAGCGATGGCGGACAGGAaacag
aggcggaggagGCACCCTTCTTAGCCAACGGGTCGACTTCAACGGCCAGA
AAGAAACGCACGCCGCGGGGTCCACCCTTCCAGGTCCAGCACCAagagcc
cctcctccttccccacctaGACACAACGCAAGGCGCCGCCGGCGCTGCCT
TCCAGCAAGAGATGGGGAAGCTGAGCAAATACATTGATCCAGACCGGCAT
GTGGAGCGGGGTCCCTACCACGGGAAATCGTACCCAGACTCCTTGACGTA
CGAGCCGGAGGACAGCGAGGTGTGGCGCACGCAtgagCTACAAAGGGTCC
ATAGAGAGCAGAGTCAATTCTGGACGACGGGCAAAAAACGcGCGGTCAAG
CGCTGGCTCCTTACGGCACTGACCGGCGTCCTGATTGGCCTCCTCGGTGT
GGCGATGACGTACACCACGCAACGGCTCGTCCGTTTCAAGCTCGGAACCG
TTACACgcctcttgcaggaggaagtggcCGGGACCCGTCTTCCcggcgcc
tccttcttctcctacCTCGGTCTGAACCTCCTGTACGTCCTCATCGCCAA
TGCTGCGGTCTGGGCGGAACCTGTTGCGGCCGGGAGCGGCATTCCCGAGA
TCAAAGCCTTCCTGAACGGCGTCAGCCTCCCGAGGtaaATGGATGACGGG
GACCCGCTCTCGCATCCTGCCATTCAGCTGCAAgtgtctccccccccgtc
tgcCGCTAAggggagaagcagcagcaacagcagcaacagtaGCAGTGGCA
GTGGCAGTAGTTTCAGCAGCCATGCCAGCACAGTCAGCGTTTGGCGAcgt
caacaacaacaacaaccgagacagcagcagcagcagcagcagcgtgtGAC
ACCGTCTCCTGAGTCGGGTCTCGGGGCGGTGGATCGAACAGTggggggcg
gagaagcaGATACGACAACAGCCCCCACGGCGATCAAGACACAGCACAGT
AGCGATGGCGGACAGGAaacagaggcggaggagGCACCCTTCTTAGCCAA
CGGGTCGACTTCAACGGCCAGAAAGAAACGCACGCCGCGGGGTCCACCCT
TCCAGGTCCAGCACCAagagcccctcctccttccccacctaGACACAACG
CAAGGCGCCGCCGGCGCTGCCTTCCAGCAAGAGATGGGGAAGCTGAGCAA
ATACATTGATCCAGACCGGCATGTGGAGCGGGGTCCCTACCACGGGAAAT
CGTACCCAGACTCCTTGACGTACGAGCCGGAGGACAGCGAGGTGTGGCGC
ACGCAtgagCTACAAAGGGTCCATAGAGAGCAGAGTCAATTCTGGACGAC
GGGCAAAAAACGcGCGGTCAAGCGCTGGCTCCTTACGGCACTGACCGGCG
TCCTGATTGGCCTCCTCGGTGTGGCGATGACGTACACCACGCAACGGCTC
GTCCGTTTCAAGCTCGGAACCGTTACACgcctcttgcaggaggaagtggc
CGGGACCCGTCTTCCcggcgcctccttcttctcctacCTCGGTCTGAACC
TCCTGTACGTCCTCATCGCCAATGCTGCGGTCTGGGCGGAACCTGTTGCG
GCCGGGAGCGGCATTCCCGAGATCAAAGCCTTCCTGAACGGCGTCAGCCT
CCCGAGGtaaATGGATGACGGGGACCCGCTCTCGCATCCTGCCATTCAGC
TGCAAgtgtctccccccccgtctgcCGCTAAggggagaagcagcagcaac
agcagcaacagtaGCAGTGGCAGTGGCAGTAGTTTCAGCAGCCATGCCAG
CACAGTCAGCGTTTGGCGAcgtcaacaacaacaacaaccgagacagcagc
agcagcagcagcagcgtgtGACACCGTCTCCTGAGTCGGGTCTCGGGGCG
GTGGATCGAACAGTggggggcggagaagcaGATACGACAACAGCCCCCAC
GGCGATCAAGACACAGCACAGTAGCGATGGCGGACAGGAaacagaggcgg
aggagGCACCCTTCTTAGCCAACGGGTCGACTTCAACGGCCAGAAAGAAA
CGCACGCCGCGGGGTCCACCCTTCCAGGTCCAGCACCAagagcccctcct
ccttccccacctaGACACAACGCAAGGCGCCGCCGGCGCTGCCTTCCAGC
AAGAGATGGGGAAGCTGAGCAAATACATTGATCCAGACCGGCATGTGGAG
CGGGGTCCCTACCACGGGAAATCGTACCCAGACTCCTTGACGTACGAGCC
GGAGGACAGCGAGGTGTGGCGCACGCAtgagCTACAAAGGGTCCATAGAG
AGCAGAGTCAATTCTGGACGACGGGCAAAAAACGcGCGGTCAAGCGCTGG
CTCCTTACGGCACTGACCGGCGTCCTGATTGGCCTCCTCGGTGTGGCGAT
GACGTACACCACGCAACGGCTCGTCCGTTTCAAGCTCGGAACCGTTACAC
gcctcttgcaggaggaagtggcCGGGACCCGTCTTCCcggcgcctccttc
ttctcctacCTCGGTCTGAACCTCCTGTACGTCCTCATCGCCAATGCTGC
GGTCTGGGCGGAACCTGTTGCGGCCGGGAGCGGCATTCCCGAGATCAAAG
CCTTCCTGAACGGCGTCAGCCTCCCGAGGtaa

Synonyms

Publications