EWM27911.1, cds2765 (CDS) Nannochloropsis gaditana

Overview
NameEWM27911.1
Unique Namecds2765
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1168236..1168580 +
Alignment locationCM002459.1:1168736..1168930 +
Alignment locationCM002459.1:1169105..1169185 +
Alignment locationCM002459.1:1169288..1169340 +
Alignment locationCM002459.1:1169481..1169596 +
Alignment locationCM002459.1:1169729..1169910 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27911.1
Productchloride channel family
Orig transcript idgnl|cribi|Naga_100267g1.4724.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1168236..1168580 +
CM002459.1supercontigCM002459.1:1168736..1168930 +
CM002459.1supercontigCM002459.1:1169105..1169185 +
CM002459.1supercontigCM002459.1:1169288..1169340 +
CM002459.1supercontigCM002459.1:1169481..1169596 +
CM002459.1supercontigCM002459.1:1169729..1169910 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR014743Cl-channel_core
Homology
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|585110250|gb|EWM27911.1| (chloride channel family [Nannochloropsis gaditana])

HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
            MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR
Sbjct:    1 MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|553183878|ref|XP_005853984.1| (hypothetical protein NGA_0468300, partial [Nannochloropsis gaditana CCMP526] >gi|422295077|gb|EKU22376.1| hypothetical protein NGA_0468300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 365.925 bits (938), Expect = 1.156e-125
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0
Query:   28 SSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQR 210
            SSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTA+KKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHE+ R
Sbjct:    1 SSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTAKKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHEVGR 183          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|676381551|ref|XP_009034054.1| (hypothetical protein AURANDRAFT_52441 [Aureococcus anophagefferens] >gi|323455847|gb|EGB11715.1| hypothetical protein AURANDRAFT_52441 [Aureococcus anophagefferens])

HSP 1 Score: 128.257 bits (321), Expect = 3.253e-29
Identity = 61/137 (44.53%), Postives = 92/137 (67.15%), Query Frame = 0
Query:  187 KSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
            K+ P+SL +  E++EVWRT + Q  +  ++++WT+      KRW+LT + GVL G++G+ +TY TQ   R K   V  ++  E AG    GA+FF+YLG N+ +V +A   VW EPV+AGSGIPE+K +LNG+++PR
Sbjct:   44 KTVPESLNFTVEENEVWRTKQAQLQYTNRNRWWTSSTSTTFKRWVLTMVVGVLTGVVGIFITYFTQYFTRIKFAAVRDVMDREAAGDLARGAAFFAYLGFNVFFVCVATLMVWIEPVSAGSGIPEVKCYLNGINIPR 180          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1210527566|dbj|GAX13691.1| (chloride channel 7 [Fistulifera solaris])

HSP 1 Score: 99.7525 bits (247), Expect = 1.532e-19
Identity = 57/162 (35.19%), Postives = 80/162 (49.38%), Query Frame = 0
Query:  195 YEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFK------------------LGTVTRLLQEEVAGTRLPGAS---------------FFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
            YEP++SEVWR +  Q   R +  +WTTGKKR++ RW+LT + GV+  L+ +      + L R K                  + T   L Q +   T    AS               FF ++   L++  IA+  VW EPV+ GSGIPEIK FLNG+ +PR
Sbjct:   81 YEPDESEVWRAYTAQLHFRNRGHWWTTGKKRSLMRWVLTFIIGVVQALVAILSNIACRSLSRRKFEHVYQYLTVPEPSSSVTIDTAQDLFQFDDDATTDGAASHSSLNQNVTPSLFTAFFYFVLYQLVFAAIASVFVWIEPVSGGSGIPEIKCFLNGIDIPR 242          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1210530449|dbj|GAX11033.1| (chloride channel 7 [Fistulifera solaris])

HSP 1 Score: 99.3673 bits (246), Expect = 2.144e-19
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 0
Query:  194 TYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKL------------------GTVTRLLQEEVAGTRLPGAS---------------FFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
             YEP++SEVWR +  Q   R +  +WTTGKKR++ RW+LT + GV+  L+ +      + L R K                    T   L Q +   T    AS               FF ++   L++  IA+  VW EPV+ GSGIPEIK FLNG+ +PR
Sbjct:   78 NYEPDESEVWRAYTAQLHFRNRGHWWTTGKKRSLMRWVLTFIIGVVQALVAILSNIACRSLSRRKFEHVYQYLTVPVPSSSVSHDTAQDLFQFDDDATTDGAASHSSLNQNVAPSLFTAFFYFVLYQLVFAAIASVFVWIEPVSGGSGIPEIKCFLNGIDIPR 240          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1072238145|gb|OEU22872.1| (voltage activated chloride channel CLC7 type [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.9005 bits (237), Expect = 3.097e-18
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 0
Query:  195 YEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
            YEP++SEVWR +  Q     + Q+WTTGKKRA+KRW+LT   GV+  ++  +  + ++ +   K   +  LL      +     +F+++  + +L   +A+  V+ EPV+ GSGIPEIK +LNG+ LPR
Sbjct:   48 YEPDESEVWRAYVAQVHFSNRGQWWTTGKKRALKRWILTFAVGVVQAVVATSCNFASRSMTSRKYDYIYELLNPSFVES---STAFWNFCLIQVLLCAVASMFVYIEPVSGGSGIPEIKCYLNGIDLPR 173          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1072222819|gb|OEU07578.1| (voltage activated chloride channel CLC7 type [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.5153 bits (236), Expect = 4.486e-18
Identity = 45/131 (34.35%), Postives = 75/131 (57.25%), Query Frame = 0
Query:  192 SLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLP 322
            SLTY  ++S+VWR H     +  + +FW  GK + ++ +    +TGV+   +  A+  +++  +  K   V  LL+E   G  +  ++F  +  + L + +IA A VW EP+A GSGIPE+K +LNG+ LP
Sbjct:   77 SLTYVADESDVWRAHWAIEHYMLRGEFWNHGKFKTIQAYYWIVMTGVMQACIAYAVNMSSKVFIEKKFDMVAELLEE---GAII--SAFLKFYFVQLSFAMIAGACVWIEPIAGGSGIPEVKCYLNGIDLP 202          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|219120987|ref|XP_002185725.1| (voltage activated chloride channel CLC7 type [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582574|gb|ACI65195.1| voltage activated chloride channel CLC7 type [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 93.2041 bits (230), Expect = 2.680e-17
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 0
Query:  184 YHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQE-EVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
            YH  S  DSLTY  ++S+ WR HE  +    + +FW  GK    +R+ L +  G+    +      ++   ++ K G V  LL+   VA       +FF +L +   +  +A+  VW EPV+AGSGIPE+K +LNGV LPR
Sbjct:   37 YHEPSI-DSLTYVADESDAWRAHEATQQFLHRGKFWNKGKHETTQRYFLISAIGITQATVAYLTNLSSSYFIKSKYGQVYDLLEHGHVA------HAFFRFLFIQTAFAAVASIFVWIEPVSAGSGIPEVKCYLNGVDLPR 170          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|780033536|ref|XP_011667044.1| (PREDICTED: chloride transport protein 6 [Strongylocentrotus purpuratus])

HSP 1 Score: 80.8777 bits (198), Expect = 3.881e-13
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0
Query:  227 VKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLP 322
            V RW++TA  G+L GL+ V + Y    L  +KLGTV   L +    + L G      L  N+ +VLIA+  V  EP+A GSGIPEIK +LNGV +P
Sbjct:   77 VFRWIMTAAIGILTGLVAVFINYFVGLLSNWKLGTVDNYLGDCSKYSCL-GVPLMILLAFNMTFVLIASLLVALEPIAGGSGIPEIKCYLNGVKVP 171          
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|299115287|emb|CBN75564.1| (phatr1_ua_kg.chr_17000030 [Ectocarpus siliculosus])

HSP 1 Score: 79.337 bits (194), Expect = 6.987e-13
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0
Query:  232 LTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGA-SFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
            +T + G L GL+ V +T+ T+ L+  K   V   L   +AG   P   +F   LG NL YV +AN  VW EP+AAGSGIPEIK+FLNG+ LPR
Sbjct:    1 MTLIVGALTGLIAVFVTFCTKTLLNVKFTPVYTALH--IAGG--PSWRAFLVMLGFNLSYVTVANGLVWLEPLAAGSGIPEIKSFLNGIDLPR 89          
The following BLAST results are available for this feature:
BLAST of EWM27911.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110250|gb|EWM27911.1|0.000e+0100.00chloride channel family [Nannochloropsis gaditana][more]
gi|553183878|ref|XP_005853984.1|1.156e-12598.36hypothetical protein NGA_0468300, partial [Nannoch... [more]
gi|676381551|ref|XP_009034054.1|3.253e-2944.53hypothetical protein AURANDRAFT_52441 [Aureococcus... [more]
gi|1210527566|dbj|GAX13691.1|1.532e-1935.19chloride channel 7 [Fistulifera solaris][more]
gi|1210530449|dbj|GAX11033.1|2.144e-1934.97chloride channel 7 [Fistulifera solaris][more]
gi|1072238145|gb|OEU22872.1|3.097e-1837.98voltage activated chloride channel CLC7 type [Frag... [more]
gi|1072222819|gb|OEU07578.1|4.486e-1834.35voltage activated chloride channel CLC7 type [Frag... [more]
gi|219120987|ref|XP_002185725.1|2.680e-1736.17voltage activated chloride channel CLC7 type [Phae... [more]
gi|780033536|ref|XP_011667044.1|3.881e-1344.79PREDICTED: chloride transport protein 6 [Strongylo... [more]
gi|299115287|emb|CBN75564.1|6.987e-1348.39phatr1_ua_kg.chr_17000030 [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2773rna2773Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications