EWM27911.1, cds2765 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|585110250|gb|EWM27911.1| (chloride channel family [Nannochloropsis gaditana]) HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query: 1 MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR
Sbjct: 1 MDDGDPLSHPAIQLQVSPPPSAAKGRSSSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|553183878|ref|XP_005853984.1| (hypothetical protein NGA_0468300, partial [Nannochloropsis gaditana CCMP526] >gi|422295077|gb|EKU22376.1| hypothetical protein NGA_0468300, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 365.925 bits (938), Expect = 1.156e-125 Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0
Query: 28 SSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTARKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHELQR 210
SSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTA+KKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHE+ R
Sbjct: 1 SSNSSNSSSGSGSSFSSHASTVSVWRRQQQQQPRQQQQQQQRVTPSPESGLGAVDRTVGGGEADTTTAPTAIKTQHSSDGGQETEAEEAPFLANGSTSTAKKKRTPRGPPFQVQHQEPLLLPHLDTTQGAAGAAFQQEMGKLSKYIDPDRHVERGPYHGKSYPDSLTYEPEDSEVWRTHEVGR 183
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|676381551|ref|XP_009034054.1| (hypothetical protein AURANDRAFT_52441 [Aureococcus anophagefferens] >gi|323455847|gb|EGB11715.1| hypothetical protein AURANDRAFT_52441 [Aureococcus anophagefferens]) HSP 1 Score: 128.257 bits (321), Expect = 3.253e-29 Identity = 61/137 (44.53%), Postives = 92/137 (67.15%), Query Frame = 0
Query: 187 KSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
K+ P+SL + E++EVWRT + Q + ++++WT+ KRW+LT + GVL G++G+ +TY TQ R K V ++ E AG GA+FF+YLG N+ +V +A VW EPV+AGSGIPE+K +LNG+++PR
Sbjct: 44 KTVPESLNFTVEENEVWRTKQAQLQYTNRNRWWTSSTSTTFKRWVLTMVVGVLTGVVGIFITYFTQYFTRIKFAAVRDVMDREAAGDLARGAAFFAYLGFNVFFVCVATLMVWIEPVSAGSGIPEVKCYLNGINIPR 180
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1210527566|dbj|GAX13691.1| (chloride channel 7 [Fistulifera solaris]) HSP 1 Score: 99.7525 bits (247), Expect = 1.532e-19 Identity = 57/162 (35.19%), Postives = 80/162 (49.38%), Query Frame = 0
Query: 195 YEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFK------------------LGTVTRLLQEEVAGTRLPGAS---------------FFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
YEP++SEVWR + Q R + +WTTGKKR++ RW+LT + GV+ L+ + + L R K + T L Q + T AS FF ++ L++ IA+ VW EPV+ GSGIPEIK FLNG+ +PR
Sbjct: 81 YEPDESEVWRAYTAQLHFRNRGHWWTTGKKRSLMRWVLTFIIGVVQALVAILSNIACRSLSRRKFEHVYQYLTVPEPSSSVTIDTAQDLFQFDDDATTDGAASHSSLNQNVTPSLFTAFFYFVLYQLVFAAIASVFVWIEPVSGGSGIPEIKCFLNGIDIPR 242
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1210530449|dbj|GAX11033.1| (chloride channel 7 [Fistulifera solaris]) HSP 1 Score: 99.3673 bits (246), Expect = 2.144e-19 Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 0
Query: 194 TYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKL------------------GTVTRLLQEEVAGTRLPGAS---------------FFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
YEP++SEVWR + Q R + +WTTGKKR++ RW+LT + GV+ L+ + + L R K T L Q + T AS FF ++ L++ IA+ VW EPV+ GSGIPEIK FLNG+ +PR
Sbjct: 78 NYEPDESEVWRAYTAQLHFRNRGHWWTTGKKRSLMRWVLTFIIGVVQALVAILSNIACRSLSRRKFEHVYQYLTVPVPSSSVSHDTAQDLFQFDDDATTDGAASHSSLNQNVAPSLFTAFFYFVLYQLVFAAIASVFVWIEPVSGGSGIPEIKCFLNGIDIPR 240
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1072238145|gb|OEU22872.1| (voltage activated chloride channel CLC7 type [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 95.9005 bits (237), Expect = 3.097e-18 Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 0
Query: 195 YEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
YEP++SEVWR + Q + Q+WTTGKKRA+KRW+LT GV+ ++ + + ++ + K + LL + +F+++ + +L +A+ V+ EPV+ GSGIPEIK +LNG+ LPR
Sbjct: 48 YEPDESEVWRAYVAQVHFSNRGQWWTTGKKRALKRWILTFAVGVVQAVVATSCNFASRSMTSRKYDYIYELLNPSFVES---STAFWNFCLIQVLLCAVASMFVYIEPVSGGSGIPEIKCYLNGIDLPR 173
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|1072222819|gb|OEU07578.1| (voltage activated chloride channel CLC7 type [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 95.5153 bits (236), Expect = 4.486e-18 Identity = 45/131 (34.35%), Postives = 75/131 (57.25%), Query Frame = 0
Query: 192 SLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLP 322
SLTY ++S+VWR H + + +FW GK + ++ + +TGV+ + A+ +++ + K V LL+E G + ++F + + L + +IA A VW EP+A GSGIPE+K +LNG+ LP
Sbjct: 77 SLTYVADESDVWRAHWAIEHYMLRGEFWNHGKFKTIQAYYWIVMTGVMQACIAYAVNMSSKVFIEKKFDMVAELLEE---GAII--SAFLKFYFVQLSFAMIAGACVWIEPIAGGSGIPEVKCYLNGIDLP 202
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|219120987|ref|XP_002185725.1| (voltage activated chloride channel CLC7 type [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582574|gb|ACI65195.1| voltage activated chloride channel CLC7 type [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 93.2041 bits (230), Expect = 2.680e-17 Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 0
Query: 184 YHGKSYPDSLTYEPEDSEVWRTHELQRVHREQSQFWTTGKKRAVKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQE-EVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
YH S DSLTY ++S+ WR HE + + +FW GK +R+ L + G+ + ++ ++ K G V LL+ VA +FF +L + + +A+ VW EPV+AGSGIPE+K +LNGV LPR
Sbjct: 37 YHEPSI-DSLTYVADESDAWRAHEATQQFLHRGKFWNKGKHETTQRYFLISAIGITQATVAYLTNLSSSYFIKSKYGQVYDLLEHGHVA------HAFFRFLFIQTAFAAVASIFVWIEPVSAGSGIPEVKCYLNGVDLPR 170
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|780033536|ref|XP_011667044.1| (PREDICTED: chloride transport protein 6 [Strongylocentrotus purpuratus]) HSP 1 Score: 80.8777 bits (198), Expect = 3.881e-13 Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0
Query: 227 VKRWLLTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGASFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLP 322
V RW++TA G+L GL+ V + Y L +KLGTV L + + L G L N+ +VLIA+ V EP+A GSGIPEIK +LNGV +P
Sbjct: 77 VFRWIMTAAIGILTGLVAVFINYFVGLLSNWKLGTVDNYLGDCSKYSCL-GVPLMILLAFNMTFVLIASLLVALEPIAGGSGIPEIKCYLNGVKVP 171
BLAST of EWM27911.1 vs. NCBI_GenBank
Match: gi|299115287|emb|CBN75564.1| (phatr1_ua_kg.chr_17000030 [Ectocarpus siliculosus]) HSP 1 Score: 79.337 bits (194), Expect = 6.987e-13 Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0
Query: 232 LTALTGVLIGLLGVAMTYTTQRLVRFKLGTVTRLLQEEVAGTRLPGA-SFFSYLGLNLLYVLIANAAVWAEPVAAGSGIPEIKAFLNGVSLPR 323
+T + G L GL+ V +T+ T+ L+ K V L +AG P +F LG NL YV +AN VW EP+AAGSGIPEIK+FLNG+ LPR
Sbjct: 1 MTLIVGALTGLIAVFVTFCTKTLLNVKFTPVYTALH--IAGG--PSWRAFLVMLGFNLSYVTVANGLVWLEPLAAGSGIPEIKSFLNGIDLPR 89 The following BLAST results are available for this feature:
BLAST of EWM27911.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|