rna277, rna277 (mRNA) Nannochloropsis gaditana

Overview
Namerna277
Unique Namerna277
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length753
Alignment locationCM002455.1:700306..700858 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100026g39.10632.mrna
Orig protein idgnl|cribi|Naga_100026g39.10632
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:700306..700858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g39gene266Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna277rna277-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30378.1cds277Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna277 ID=rna277|Name=rna277|organism=Nannochloropsis gaditana|type=mRNA|length=753bp
ATGGATTCGCGGGACTCATTGGTTTACAAGGCCAAACTGGCGGAGCAAGC
CGAGCGATTCGACGAGATGGTCGACCACATGAAGGCCGTGGCCCAACAGC
CTCAGGAGCTTTCTGTCGAGGAGCGCAATCTTCTCTCCGTGGCGTACAAA
AACGTGATTGGGTCCCGTCGAGCCTCTTGGCGCGTAATTTCCTCCATCGA
ACAGAAAGGGGAGCAGGAGCGTCTGCCCCTGATTCGTGAGTACAAAGCCA
AGATTGAGGACGAGCTGCTGGAGATTTGCAACGACATTTTGAATATAATA
GAGACGGAGCTCATCCCGAACTCGACTTCTGAGGAAGGCAAGGTATTCTA
TTTCAAGATGAAGGGTGACTATCATCGTTACTTGGCAGAGTTCCAGGTGG
GCGAGAAGCGACGCGAGTCCTCGGACGCGGCCCTTTCCGCCTACAAGTGC
GCCACAGACATCGCCGAGCACGATTTGCCTCCCACACACCCGATCCGCTT
GGGCCTGGCCTTGAATTTTTCGGTCTTCTTCTATGAGATATACAACAGCC
CGGATCGAGCCTGCGCATTGGCGAAGAAAGCTTTCGATGACGCGATCGCT
GAACTGGACACTCTCTCGGAGGAGAGCTACAAGGACAGCACCCTGATCAT
GCAGTTGCTTCGCGACAACCTGACGCTCTGGACTTCGGATCAAAACGAGG
CGGACGAGGCCGGCGCGAACAATGAGGACGGGAACCGGGTGGAGGACCTC
TGA
back to top

protein sequence of rna277

>rna277-protein ID=rna277-protein|Name=rna277|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MTLLGSGPSEGLWIGSWRSTDGKCCRSEGGIMARESPGGDGMGLILEGEL
KRASDREEEIGGGVHCSWNVSVREYLHSTYKLCPRSWGMGLAGPQQIRPS
VLRYRIIQATIEVITMSCLILRRVGGKARVRDADASRRRWPHPSASGKEK
KKKKQN
back to top

mRNA from alignment at CM002455.1:700306..700858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna277 ID=rna277|Name=rna277|organism=Nannochloropsis gaditana|type=mRNA|length=553bp|location=Sequence derived from alignment at CM002455.1:700306..700858+ (Nannochloropsis gaditana)
aTGACTCTTCTGGGCAGCGGGCCTTCTGAGGGCCTATGGATTggcagctg
gaggagcaCCGACGGGAAATGCTGCAGAAGTGAGGGTGGCATCATGGCGA
GAGAGAGCCCGGGGGGTGACGGAATGGGCTTGATTTTGTCCGCGTGCATG
GGTAGGAGAGCAAGACggatggggggagagagggcgaaTTAAAGAGAGCG
AGCGatagggaagaagaaatcgGCGGAGGAGTGCATTGCTCCTGGAACGT
GAGTGTTAGAGAGTACCTTCACAGCACCTATAAGCTCTGCCCCCGGTCTT
GGGGCATGGGACTGGCGGGACCACAGCAGATACGACCCAGCGTCTTGCGT
TATAGAATAATACAGTGATATTTTATTGAAATCTCTCTGTGTGGGCGGCT
GGTAGGGCTACCATTGAAGTCATTACCATGTCCTGCCTTATTTTGAGACG
GGTTGGGGGTAAGGCAAGGGTGAGGGATGCGGACGCTTCACGTCGTCGAT
GGCCTCATCCGTCGGCCtccgggaaggaaaaaaaaaagaagaaacaaAAT
TAA
back to top

Coding sequence (CDS) from alignment at CM002455.1:700306..700858+

>rna277 ID=rna277|Name=rna277|organism=Nannochloropsis gaditana|type=CDS|length=1413bp|location=Sequence derived from alignment at CM002455.1:700306..700858+ (Nannochloropsis gaditana)
aTGACTCTTCTGGGCAGCGGGCCTTCTGAGGGCCTATGGATTggcagctg
gaggagcaCCGACGGGAAATGCTGCAGAAGTGAGGGTGGCATCATGGCGA
GAGAGAGCCCGGGGGGTGACGGAATGGGCTTGATTTTagagggcgaaTTA
AAGAGAGCGAGCGatagggaagaagaaatcgGCGGAGGAGTGCATTGCTC
CTGGAACGTGAGTGTTAGAGAGTACCTTCACAGCACCTATAAGCTCTGCC
CCCGGTCTTGGGGCATGGGACTGGCGGGACCACAGCAGATACGACCCAGC
GTCTTGCGTTATAGAATAATACAGGCTACCATTGAAGTCATTACCATGTC
CTGCCTTATTTTGAGACGGGTTGGGGGTAAGGCAAGGGTGAGGGATGCGG
ACGCTTCACGTCGTCGATGGCCTCATCCGTCGGCCtccgggaaggaaaaa
aaaaagaagaaacaaAATTAAaTGACTCTTCTGGGCAGCGGGCCTTCTGA
GGGCCTATGGATTggcagctggaggagcaCCGACGGGAAATGCTGCAGAA
GTGAGGGTGGCATCATGGCGAGAGAGAGCCCGGGGGGTGACGGAATGGGC
TTGATTTTagagggcgaaTTAAAGAGAGCGAGCGatagggaagaagaaat
cgGCGGAGGAGTGCATTGCTCCTGGAACGTGAGTGTTAGAGAGTACCTTC
ACAGCACCTATAAGCTCTGCCCCCGGTCTTGGGGCATGGGACTGGCGGGA
CCACAGCAGATACGACCCAGCGTCTTGCGTTATAGAATAATACAGGCTAC
CATTGAAGTCATTACCATGTCCTGCCTTATTTTGAGACGGGTTGGGGGTA
AGGCAAGGGTGAGGGATGCGGACGCTTCACGTCGTCGATGGCCTCATCCG
TCGGCCtccgggaaggaaaaaaaaaagaagaaacaaAATTAAaTGACTCT
TCTGGGCAGCGGGCCTTCTGAGGGCCTATGGATTggcagctggaggagca
CCGACGGGAAATGCTGCAGAAGTGAGGGTGGCATCATGGCGAGAGAGAGC
CCGGGGGGTGACGGAATGGGCTTGATTTTagagggcgaaTTAAAGAGAGC
GAGCGatagggaagaagaaatcgGCGGAGGAGTGCATTGCTCCTGGAACG
TGAGTGTTAGAGAGTACCTTCACAGCACCTATAAGCTCTGCCCCCGGTCT
TGGGGCATGGGACTGGCGGGACCACAGCAGATACGACCCAGCGTCTTGCG
TTATAGAATAATACAGGCTACCATTGAAGTCATTACCATGTCCTGCCTTA
TTTTGAGACGGGTTGGGGGTAAGGCAAGGGTGAGGGATGCGGACGCTTCA
CGTCGTCGATGGCCTCATCCGTCGGCCtccgggaaggaaaaaaaaaagaa
gaaacaaAATTAA
back to top
Synonyms
Publications