rna2763, rna2763 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2763
Unique Name	rna2763
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1209
Alignment location	CM002459.1:1145954..1147610 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal rna-processing protein 8
Orig transcript id	gnl\|cribi\|Naga_100285g9.3544.mrna
Orig protein id	gnl\|cribi\|Naga_100285g9.3544
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1145954..1147610 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100285g9	gene2644	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2763	rna2763-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27923.1	cds2755	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1145954..1147610-
coding sequence from alignment at CM002459.1:1145954..1147610-

mRNA sequence

>rna2763 ID=rna2763|Name=rna2763|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
CAGTGCTCGATCAAATGCCAAGTAGCACCCTCTGTTACCTAGAGTGCGCG
CCCTGCACACGCTCATCATGCCACGACTCCACACATGTGATACAGGTACA
CCATGCGGTCGTTGCAGCACTGGAGTCGAGCAGCTTCGTGTTTTTGTGCC
CTCCCCGTCACGGCTTTCATCGCACCTACATTCTCTCAGTCCTGCAGCGA
CGTTGCTTCTTCTCCCTCCTCAACGCGACGAGGCCTTACCACAATGAATG
TCAAGATCGCAGACGTATTGAAAGACCCAAAGTGGCCAGAGGAGCCATTT
TTCCGCCCGACTGATTGGCAACGGCAGGACGAATCGAGCGATACGTCTTT
CTACTCCAGCCCTCGCTTCGTCACCCACATCGATGACCCGGCCATAAAGG
CGTTAACAGACTATTACGCAGTGACGTTTCCGCCGAACGCGGAAGTGCTC
GACATCTGCTCGAGTTGGATCTCCCACTACCCCGAGGGTGCCAAGAGGAA
GCGGACGGTGGGGATGGGCATGAACAAAGCGGAACTCGCCAAAAACAAGC
AGTTGGACGAGTATGTGGTCAAGGACCTCAACGTGGACCCCACCCTTCCC
TTCTGCGACGAGAGTTTCGACGTGGTCACCTGCGTGGTGAGCGTCGACTA
CCTCATCCGCCCGCTTGAGGTCTTCGCGGAGATCGCGCGGGTCTTGAAGC
CGGGCGGGACCTGCATTATGAGCATGTCCAACCGGTGTTTCCCCACCAAA
GCCGTCTCCATTTGGCTCGAGACGGGCGACGCTGGCCATGTCTTTATCGT
GGGCGCGTACTTTCGGTACGGAAGTCCCTTGTTCGAGCCTCCGACAGCGG
TGGATATCAGCCCCAACCCTGGTCGGAGCGACCCTATGTTCATCGTACAG
GCCGCCAAGAAAAAAGAGGCCACGTCGGGGTGAGCGTGAGGGGTTGCGGT
GTGAGGGCTGAGATACTAGAGTGGTAGGACGATGGGAATCCGGGGGGGAG
GGAGGGAAGGGGCGTTTGGGTTATACAAGAGAAGGAGCGGCCACGGTCGC
GATAGAGGAATGGCAGCAAAGAATACCACATGCATTGGTTGCTGTGGGGA
CCTTTGGCGAGTATTTGTGCGAATGCCTCTTTTACATGCAGCCGACCTTA
TCGGCGTTTATATAGGCAGGGTTTGGCGCGAAAGTCCGGCGGCTTCCCAT
CCTCCTTCC

protein sequence of rna2763

>rna2763-protein ID=rna2763-protein|Name=rna2763|organism=Nannochloropsis gaditana|type=polypeptide|length=506bp
MQPTFAPFNRPIASRPMPKKRLPSKKAALMTGGKKRYPSTTAPDPAAGTH
SSYTRDGAPSINASCHGNKPLPAAETKTSLTPESQIKRKRGRRNRKNAKL
ASSAPNEVLLATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRK
KRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAK
MKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKW
PRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGG
EEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCV
EGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACK
RLDRTNKMFFLVDFVKVGKEKETGGKGQKRKGAASGSAPGNVTEKGKEKI
RRGGKRGGGEQGKGSGQGSDMKAGPGSPRAGGRGKGGKEDGKPPDFRAKP
CLYKRR

mRNA from alignment at CM002459.1:1145954..1147610-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2763 ID=rna2763|Name=rna2763|organism=Nannochloropsis gaditana|type=mRNA|length=1657bp|location=Sequence derived from alignment at CM002459.1:1145954..1147610- (Nannochloropsis gaditana)
CAGATGCAACCTACATTCGCTCCTTTTAACAGGCCGATTGCGTCCAGACC
AATGCCTAAGAAGAGATTGCCTTCAAAGAAGGCGGCATTGATGACGGGGG
GGAAGAAACGGTATCCCAGCACCACGGCGCCGGATCCTGCGGCTGGTACA
CACAGCTCCTATACCCGTGATGGTGCTCCGTCGATTAACGCGAGCTGTCA
TGGGAATAAGCCTCTGCCCGCTGCTGAAACTAAAACATCCTTGACTCCGG
AATCTCAAATAAAACGGAAGCGTGGTCGGAGGAACAGGAAAAACGCGAAA
TTAGCGTCGAGCGCTCCAAATGAAGTGCTCCTGGCAACCTCCTCCCCTAT
CCCCTCTTTTGCCGCTACCATTCTGGGAGCTGGGCCGGTCAGCCCACCCC
CGACTTCCTCTGTCAACTCACAATCTACCTCCTCAAAATCCAGAAAGAGG
AAGAAGAGGCATCCTGTGAACGCGGGAATCTCGTCTTCGTCCTCGCACTT
GGTTTCCCTTGCCCATCCTCAAAATCATCCGTCGTCAGAGGTAGCCCTGA
AAAGGGTGTCTCCATCGTCATCTGGCCCAGTTCTTAGTGCCCTTCAAGCG
AAAATGAAAGCCAGGCTGGAAGGAGCGCGCTTTCGCGATATCAATGAGAT
GCTGTACACCTCCCGTGGCGACCATGCCCTTACCACGTTCAAAAACGAGC
CCGCTCTCTTTGAAGCGGTCAGTTCATGTCAGATATAGACGTGAAGAATG
GAACCATGCACACCTCCTGACACGCCTTCCCTTCATCATTTCTCTTCCCT
TTCCTGACCGCCCCTTAGTACCACAAAGGCTTTCGGGAGCAAGTCCAGAA
GTGGCCCCGGAACCCCCTAGACGATATTATCGCATGGGTGCGCAGGCAGC
CACGGACGCACACTTTTGCCGATTTTGGCTGTGGAGAGGCTCGTCTGGCG
GCCTCCTGCCCCCACCATACGGTCCACTCATTCGACCTGGTAGCTCCTGG
GGGGGAGGAGGCAGGGAGGGCGGGGACAGTGATTGCTTGCGACATGGCAA
ACGTCCCACTGCCGTCGGAGAGCGTCCACGGGGTGATTTTCTGTCTGTCA
CTCATGGCTACGAACATGATGGATTCCCTTCGGGAGGCCGTACGCGTGTG
CGTGGAAGGAGGGGTGGTCAAGGTGGTGGAGGTCCGAAGCCGGTTCGAGG
GGCAAGGCGAAGCGGAGGAGGGAGGAAAGGGAGGGAAAGAAGGTGGGGGA
GGTGGAATCGAGAAATTTGTGGCAGCCTGCCAGGCGTTGGGCTTAGCGTG
CAAACGGCTGGACAGGACGAACAAGATGTTTTTCCTGGTCGATTTCGTCA
AGGTGGGGAAGGAGAAGGAGACGGGGGGGAAAGGGCAGAAAAGAAAAGGA
GCAGCGTCTGGTTCCGCACCGGGAAACGTCACGGAGAAAGGGAAGGAGAA
AATTAGGCGAGGTGGGAAACGTGGTGGGGGTGAACAGGGCAAAGGGAGTG
GGCAAGGGTCAGATATGAAAGCGGGACCCGGGTCCCCCAGAGCGGGAGGA
CGGGGGAAAGGCGGGAAGGAGGATGGGAAGCCGCCGGACTTTCGCGCCAA
ACCCTGCCTATATAAACGCCGATAAGGTCGGCTGCATGTAAAAGAGGCAT
TCGCACA

Coding sequence (CDS) from alignment at CM002459.1:1145954..1147610-

>rna2763 ID=rna2763|Name=rna2763|organism=Nannochloropsis gaditana|type=CDS|length=3042bp|location=Sequence derived from alignment at CM002459.1:1145954..1147610- (Nannochloropsis gaditana)
TACCACAAAGGCTTTCGGGAGCAAGTCCAGAAGTGGCCCCGGAACCCCCT
AGACGATATTATCGCATGGGTGCGCAGGCAGCCACGGACGCACACTTTTG
CCGATTTTGGCTGTGGAGAGGCTCGTCTGGCGGCCTCCTGCCCCCACCAT
ACGGTCCACTCATTCGACCTGGTAGCTCCTGGGGGGGAGGAGGCAGGGAG
GGCGGGGACAGTGATTGCTTGCGACATGGCAAACGTCCCACTGCCGTCGG
AGAGCGTCCACGGGGTGATTTTCTGTCTGTCACTCATGGCTACGAACATG
ATGGATTCCCTTCGGGAGGCCGTACGCGTGTGCGTGGAAGGAGGGGTGGT
CAAGGTGGTGGAGGTCCGAAGCCGGTTCGAGGGGCAAGGCGAAGCGGAGG
AGGGAGGAAAGGGAGGGAAAGAAGGTGGGGGAGGTGGAATCGAGAAATTT
GTGGCAGCCTGCCAGGCGTTGGGCTTAGCGTGCAAACGGCTGGACAGGAC
GAACAAGATGTTTTTCCTGGTCGATTTCGTCAAGGTGGGGAAGGAGAAGG
AGACGGGGGGGAAAGGGCAGAAAAGAAAAGGAGCAGCGTCTGGTTCCGCA
CCGGGAAACGTCACGGAGAAAGGGAAGGAGAAAATTAGGCGAGGTGGGAA
ACGTGGTGGGGGTGAACAGGGCAAAGGGAGTGGGCAAGGGTCAGATATGA
AAGCGGGACCCGGGTCCCCCAGAGCGGGAGGACGGGGGAAAGGCGGGAAG
GAGGATGGGAAGCCGCCGGACTTTCGCGCCAAACCCTGCCTATATAAACG
CCGATAAATGCAACCTACATTCGCTCCTTTTAACAGGCCGATTGCGTCCA
GACCAATGCCTAAGAAGAGATTGCCTTCAAAGAAGGCGGCATTGATGACG
GGGGGGAAGAAACGGTATCCCAGCACCACGGCGCCGGATCCTGCGGCTGG
TACACACAGCTCCTATACCCGTGATGGTGCTCCGTCGATTAACGCGAGCT
GTCATGGGAATAAGCCTCTGCCCGCTGCTGAAACTAAAACATCCTTGACT
CCGGAATCTCAAATAAAACGGAAGCGTGGTCGGAGGAACAGGAAAAACGC
GAAATTAGCGTCGAGCGCTCCAAATGAAGTGCTCCTGGCAACCTCCTCCC
CTATCCCCTCTTTTGCCGCTACCATTCTGGGAGCTGGGCCGGTCAGCCCA
CCCCCGACTTCCTCTGTCAACTCACAATCTACCTCCTCAAAATCCAGAAA
GAGGAAGAAGAGGCATCCTGTGAACGCGGGAATCTCGTCTTCGTCCTCGC
ACTTGGTTTCCCTTGCCCATCCTCAAAATCATCCGTCGTCAGAGGTAGCC
CTGAAAAGGGTGTCTCCATCGTCATCTGGCCCAGTTCTTAGTGCCCTTCA
AGCGAAAATGAAAGCCAGGCTGGAAGGAGCGCGCTTTCGCGATATCAATG
AGATGCTGTACACCTCCCGTGGCGACCATGCCCTTACCACGTTCAAAAAC
GAGCCCGCTCTCTTTGAAGCGTACCACAAAGGCTTTCGGGAGCAAGTCCA
GAAGTGGCCCCGGAACCCCCTAGACGATATTATCGCATGGGTGCGCAGGC
AGCCACGGACGCACACTTTTGCCGATTTTGGCTGTGGAGAGGCTCGTCTG
GCGGCCTCCTGCCCCCACCATACGGTCCACTCATTCGACCTGGTAGCTCC
TGGGGGGGAGGAGGCAGGGAGGGCGGGGACAGTGATTGCTTGCGACATGG
CAAACGTCCCACTGCCGTCGGAGAGCGTCCACGGGGTGATTTTCTGTCTG
TCACTCATGGCTACGAACATGATGGATTCCCTTCGGGAGGCCGTACGCGT
GTGCGTGGAAGGAGGGGTGGTCAAGGTGGTGGAGGTCCGAAGCCGGTTCG
AGGGGCAAGGCGAAGCGGAGGAGGGAGGAAAGGGAGGGAAAGAAGGTGGG
GGAGGTGGAATCGAGAAATTTGTGGCAGCCTGCCAGGCGTTGGGCTTAGC
GTGCAAACGGCTGGACAGGACGAACAAGATGTTTTTCCTGGTCGATTTCG
TCAAGGTGGGGAAGGAGAAGGAGACGGGGGGGAAAGGGCAGAAAAGAAAA
GGAGCAGCGTCTGGTTCCGCACCGGGAAACGTCACGGAGAAAGGGAAGGA
GAAAATTAGGCGAGGTGGGAAACGTGGTGGGGGTGAACAGGGCAAAGGGA
GTGGGCAAGGGTCAGATATGAAAGCGGGACCCGGGTCCCCCAGAGCGGGA
GGACGGGGGAAAGGCGGGAAGGAGGATGGGAAGCCGCCGGACTTTCGCGC
CAAACCCTGCCTATATAAACGCCGATAAATGCAACCTACATTCGCTCCTT
TTAACAGGCCGATTGCGTCCAGACCAATGCCTAAGAAGAGATTGCCTTCA
AAGAAGGCGGCATTGATGACGGGGGGGAAGAAACGGTATCCCAGCACCAC
GGCGCCGGATCCTGCGGCTGGTACACACAGCTCCTATACCCGTGATGGTG
CTCCGTCGATTAACGCGAGCTGTCATGGGAATAAGCCTCTGCCCGCTGCT
GAAACTAAAACATCCTTGACTCCGGAATCTCAAATAAAACGGAAGCGTGG
TCGGAGGAACAGGAAAAACGCGAAATTAGCGTCGAGCGCTCCAAATGAAG
TGCTCCTGGCAACCTCCTCCCCTATCCCCTCTTTTGCCGCTACCATTCTG
GGAGCTGGGCCGGTCAGCCCACCCCCGACTTCCTCTGTCAACTCACAATC
TACCTCCTCAAAATCCAGAAAGAGGAAGAAGAGGCATCCTGTGAACGCGG
GAATCTCGTCTTCGTCCTCGCACTTGGTTTCCCTTGCCCATCCTCAAAAT
CATCCGTCGTCAGAGGTAGCCCTGAAAAGGGTGTCTCCATCGTCATCTGG
CCCAGTTCTTAGTGCCCTTCAAGCGAAAATGAAAGCCAGGCTGGAAGGAG
CGCGCTTTCGCGATATCAATGAGATGCTGTACACCTCCCGTGGCGACCAT
GCCCTTACCACGTTCAAAAACGAGCCCGCTCTCTTTGAAGCG

Synonyms

Publications