EWM27923.1, cds2755 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|585110263|gb|EWM27923.1| (ribosomal rna-processing protein 8 [Nannochloropsis gaditana]) HSP 1 Score: 1028.08 bits (2657), Expect = 0.000e+0 Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0 Query: 1 MQPTFAPFNRPIASRPMPKKRLPSKKAALMTGGKKRYPSTTAPDPAAGTHSSYTRDGAPSINASCHGNKPLPAAETKTSLTPESQIKRKRGRRNRKNAKLASSAPNEVLLATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRKKRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGKEKETGGKGQKRKGAASGSAPGNVTEKGKEKIRRGGKRGGGEQGKGSGQGSDMKAGPGSPRAGGRGKGGKEDGKPPDFRAKPCLYKRR 506 MQPTFAPFNRPIASRPMPKKRLPSKKAALMTGGKKRYPSTTAPDPAAGTHSSYTRDGAPSINASCHGNKPLPAAETKTSLTPESQIKRKRGRRNRKNAKLASSAPNEVLLATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRKKRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGKEKETGGKGQKRKGAASGSAPGNVTEKGKEKIRRGGKRGGGEQGKGSGQGSDMKAGPGSPRAGGRGKGGKEDGKPPDFRAKPCLYKRR Sbjct: 1 MQPTFAPFNRPIASRPMPKKRLPSKKAALMTGGKKRYPSTTAPDPAAGTHSSYTRDGAPSINASCHGNKPLPAAETKTSLTPESQIKRKRGRRNRKNAKLASSAPNEVLLATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRKKRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGKEKETGGKGQKRKGAASGSAPGNVTEKGKEKIRRGGKRGGGEQGKGSGQGSDMKAGPGSPRAGGRGKGGKEDGKPPDFRAKPCLYKRR 506
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|553189110|ref|XP_005854933.1| (ribosomal rna-processing, partial [Nannochloropsis gaditana CCMP526] >gi|422294121|gb|EKU21421.1| ribosomal rna-processing, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0 Identity = 329/334 (98.50%), Postives = 329/334 (98.50%), Query Frame = 0 Query: 17 MPKKRLPSKKAALMTGGKKRYPSTTAPDPAAGTHSSYTRDGAPSINASCHGNKPLPAAETKTSLTPESQIKRKRGRRNRKNAKLASSAPNEVLLATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRKKRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCV 350 MPKKRLPSKKAALMTGGKKR PSTTAPDPAAGT SSYTRDGAPSINASCHGNKPLPAA TKTSLTPESQIKRKR RRNRKNAKLASSAPNEV LATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRKKRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCV Sbjct: 1 MPKKRLPSKKAALMTGGKKRNPSTTAPDPAAGTQSSYTRDGAPSINASCHGNKPLPAAGTKTSLTPESQIKRKRVRRNRKNAKLASSAPNEVPLATSSPIPSFAATILGAGPVSPPPTSSVNSQSTSSKSRKRKKRHPVNAGISSSSSHLVSLAHPQNHPSSEVALKRVSPSSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCV 334
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|298710417|emb|CBJ25481.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 243.047 bits (619), Expect = 1.035e-72 Identity = 128/255 (50.20%), Postives = 165/255 (64.71%), Query Frame = 0 Query: 192 PVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGKEKETGGKGQKRKGAASGSAPGNVTEKG 446 P LS LQ +M+ +LEGA+FR INE LYTS +L FK EP LF+ YH+GFREQV+KWP +PLD II W+++ P+ ADFGCGEARLAA+ P + VHSFDLV+P V ACDMANVP+ SVH +FCLSLM TN+ D LREA RV V GG+VKV EVRSRFEG+ GG+E+F+ + LG +++DR+NKMF L +F K G++ E +G + + S VT++G Sbjct: 49 PRLSELQKRMRQKLEGAQFRMINETLYTSESGVSLAKFKQEPELFDVYHRGFREQVEKWPVHPLDIIIDWLKKYPKARV-ADFGCGEARLAATVP-NKVHSFDLVSPN-------PLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKVAEVRSRFEGE--------------EGGVERFLEVTRRLGFDTRQMDRSNKMFLLAEFKKSGRKPE---RGVEFEAKVFSSLDNGVTKEG 277
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|635369159|emb|CCI42634.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 218.009 bits (554), Expect = 9.481e-64 Identity = 109/231 (47.19%), Postives = 148/231 (64.07%), Query Frame = 0 Query: 194 LSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGKEKETG 424 LS LQ M+ RL+G+RFR +NE LYT GD A TF+++P LF+ YH+GFREQV KWP NPLD I ++++ P ADFGCGEARLA S P+ VHSFDLVAP V+AC++A+VPL S+S+ I+CL+LM T + + LREA RV GG++K+ EV+SRFE + GGI+ F++ + LG + D NKMF L++F K ++K+T Sbjct: 56 LSKLQQAMRKRLDGSRFRMLNEELYTKTGDDAFQTFQDDPELFDIYHQGFREQVTKWPINPLDIFIDYIKKHPNA-VVADFGCGEARLAQSVPNR-VHSFDLVAPNDH-------VVACNIAHVPLNSKSIDIAIYCLALMGTTIPEYLREAHRVMKAGGILKIAEVKSRFETK-------------QLGGIQGFISQLRKLGFDYQEKDERNKMFVLLEFQKSNRKKDTN 264
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|698775754|ref|XP_009820921.1| (hypothetical protein H257_00092 [Aphanomyces astaci] >gi|574123046|gb|ETV88521.1| hypothetical protein H257_00092 [Aphanomyces astaci]) HSP 1 Score: 211.46 bits (537), Expect = 4.854e-61 Identity = 108/226 (47.79%), Postives = 141/226 (62.39%), Query Frame = 0 Query: 194 LSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGK 419 LSA+Q +MK RLEG +FR +NE LYT+ GD A +F+ EP LF+ YH+GFRE +KWP NPLD I +V+ P+ ADFGCG+ARLAAS +TVHSFDLV+ R V+AC++A+VPLP ESV ++CL+LM + +++ L E RV GVVK+ EV+SRFE GGI+ FV + Q LG K D NKMF +F KV + Sbjct: 68 LSAMQEQMKKRLEGGKFRMLNEQLYTTTGDEAFNSFQAEPELFDTYHEGFREMAEKWPANPLDKFIDYVKLHPKA-IVADFGCGDARLAASVS-NTVHSFDLVS-------RNQYVVACNIAHVPLPDESVDIAVYCLALMGSTLVEYLLEGRRVLKLNGVVKIAEVKSRFET-------------DSLGGIKGFVRSMQDLGFDLKHKDENNKMFVTFEFTKVKR 271
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|673018222|ref|XP_008863072.1| (hypothetical protein H310_01666 [Aphanomyces invadans] >gi|574482275|gb|ETW09267.1| hypothetical protein H310_01666 [Aphanomyces invadans]) HSP 1 Score: 210.305 bits (534), Expect = 9.057e-61 Identity = 110/229 (48.03%), Postives = 146/229 (63.76%), Query Frame = 0 Query: 188 SSSGPVLSALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVK 416 S+SG LSA+Q +MK RLEG +FR +NE LYT+ G+ A +F+ EP LF+ YH+GFRE +KWP NPLD I +V+ P+ ADFGCG+ARLAAS +TVHSFDLV+ R +V+AC++A+VPLP ES+ ++CL+LM + +++ L E RV GVVK+ EV+SRFE GGI+ FV+A Q LG K D NKMF +FVK Sbjct: 60 SASG--LSAMQEQMKKRLEGGKFRMLNEQLYTTTGEEAFESFQAEPDLFDTYHEGFREMAEKWPANPLDTFIEYVKLHPKA-VVADFGCGDARLAASVT-NTVHSFDLVS-------RNPSVVACNIAHVPLPDESIDIAVYCLALMGSTLVEYLLEGRRVLKVHGVVKIAEVKSRFETD-------------SLGGIKGFVSAMQNLGFDLKHKDENNKMFVTFEFVK 264
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|156386198|ref|XP_001633800.1| (predicted protein [Nematostella vectensis] >gi|156220875|gb|EDO41737.1| predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 202.216 bits (513), Expect = 1.549e-58 Identity = 107/225 (47.56%), Postives = 139/225 (61.78%), Query Frame = 0 Query: 196 ALQAKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVKVGKE 420 +L KMK++LE +RFR INE LYT+ GDHALT F EPALF+ YH+GFR QV+ WP NP++ II W+ +P + ADFGCG+A +A + P+ VHSFDLVA + V AC+MANVPL S SV IFCLSLM T++ + L EA RV +GG++KV EV SR + E FV + LG + D +NKMF L+DF KV ++ Sbjct: 1 SLGEKMKSKLESSRFRWINEQLYTTSGDHALTMFSAEPALFDVYHRGFRTQVEHWPVNPVNVIIQWLLERPVSLIVADFGCGDALIAQTVPNK-VHSFDLVA-------KNDLVTACNMANVPLDSSSVDVAIFCLSLMGTDLQNYLLEAHRVLKKGGILKVAEVVSRVDP-------------------EAFVDSLSQLGFRLESRDESNKMFILMDFTKVKRK 198
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|570338192|gb|ETO86140.1| (hypothetical protein F444_00292 [Phytophthora parasitica P1976]) HSP 1 Score: 203.756 bits (517), Expect = 2.896e-58 Identity = 102/218 (46.79%), Postives = 138/218 (63.30%), Query Frame = 0 Query: 199 AKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVK 416 A+M+ +++G +FR +NE LYT+ GD A +TF+++P LF+ YH+GFRE KWP NPLD I +V+R P+ ADFGCG+ARLA S P + VHSFDLV+ R V AC++A+VPL SV ++CL+LM T++ + +RE RV GGV+KV EV+SRFE + GGIE FV + +G CK D NKMF L +FVK Sbjct: 62 AEMRRKIDGGKFRMLNEQLYTTTGDDAFSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDFVKRHPKA-VVADFGCGDARLAESVP-NKVHSFDLVS-------RKSIVTACNIADVPLKDSSVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESE-------------SLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVK 257
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|301112547|ref|XP_002998044.1| (ribosomal RNA-processing protein, putative [Phytophthora infestans T30-4] >gi|262112338|gb|EEY70390.1| ribosomal RNA-processing protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 203.371 bits (516), Expect = 4.494e-58 Identity = 100/218 (45.87%), Postives = 137/218 (62.84%), Query Frame = 0 Query: 199 AKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVK 416 A+M+ +++G +FR +NE LYT+ GD A +TF+++P LF+ YH+GFRE KWP NPLD I +V+R P+ ADFGCG+ARLA S P+ VHSFDLV+ R V AC++A+VPL SV ++CL+LM T++ + +RE RV GGV+KV EV+SRFE + GGI+ FV + +G CK D NKMF L + VK Sbjct: 65 AEMRRKIDGGKFRMLNEQLYTTTGDDAYSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDYVKRHPKA-VVADFGCGDARLAESVPNK-VHSFDLVS-------RKPIVTACNIADVPLKDSSVDIAVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESE-------------SLGGIDGFVQTLRKMGFDCKHKDERNKMFVLFELVK 260
BLAST of EWM27923.1 vs. NCBI_GenBank
Match: gi|675161957|ref|XP_008889863.1| (hypothetical protein PPTG_00237 [Phytophthora parasitica INRA-310] >gi|568109092|gb|ETN23699.1| hypothetical protein PPTG_00237 [Phytophthora parasitica INRA-310]) HSP 1 Score: 202.601 bits (514), Expect = 6.552e-58 Identity = 102/218 (46.79%), Postives = 138/218 (63.30%), Query Frame = 0 Query: 199 AKMKARLEGARFRDINEMLYTSRGDHALTTFKNEPALFEAYHKGFREQVQKWPRNPLDDIIAWVRRQPRTHTFADFGCGEARLAASCPHHTVHSFDLVAPGGEEAGRAGTVIACDMANVPLPSESVHGVIFCLSLMATNMMDSLREAVRVCVEGGVVKVVEVRSRFEGQGEAEEGGKGGKEGGGGGIEKFVAACQALGLACKRLDRTNKMFFLVDFVK 416 A+M+ +++G +FR +NE LYT+ GD A +TF+++P LF+ YH+GFRE KWP NPLD I +V+R P+ ADFGCG+ARLA S P + VHSFDLV+ R V AC++A+VPL SV ++CL+LM T++ + +RE RV GGV+KV EV+SRFE + GGIE FV + +G CK D NKMF L +FVK Sbjct: 62 AEMRRKIDGGKFRMLNEQLYTTTGDDAFSTFQDDPELFDVYHQGFREMADKWPTNPLDTFIDFVKRHPKA-VVADFGCGDARLAESVP-NKVHSFDLVS-------RKPIVTACNIADVPLKDSSVDIGVYCLALMGTSVREYVREVYRVLKPGGVLKVAEVKSRFESE-------------SLGGIEGFVQTLRKMGFDCKHKDERNKMFVLFEFVK 257 The following BLAST results are available for this feature:
BLAST of EWM27923.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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