rna2758, rna2758 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2758
Unique Name	rna2758
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1684
Alignment location	CM002459.1:1134063..1136152 +

Link to JBrowse

Properties


Property Name	Value
Product	abc subfamily abcg
Orig transcript id	gnl\|cribi\|Naga_100285g3.3540.mrna
Orig protein id	gnl\|cribi\|Naga_100285g3.3540
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1134063..1136152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100285g3	gene2639	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2758	rna2758-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27919.1	cds2750	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1134063..1136152+
coding sequence from alignment at CM002459.1:1134063..1136152+

mRNA sequence

>rna2758 ID=rna2758|Name=rna2758|organism=Nannochloropsis gaditana|type=mRNA|length=1684bp
AACAGGAGCTATGGCGACACGGGATGTGACGAAACGATTTGTGGAGCTAC
GGGTCGAAATAAAGGTATTTTGGGCGTGAATTGCCTAATCTGTTGGTTTC
GTTCTAGCATGGGAAAAACCCTCCCTATTCCCGGTCTTTTCACATGCTTT
TCACGTACCTTCCACATGACTCCTCCACGTGCATCAAGTTCTACGCACAT
GTCCACATTTTGCACCCCTACATCATGCGCTCTCATCATTCGGAGATTCT
GCACGGCATCTGGCGTGGGTGCGGTTGTGTCACGTTTTTTTGATTCCTCC
ATCGTGCTTCCAAGGCCCTATCCTCCCCCCCTCCTCCACAAGCTCTCTCA
TCTCCATGATGTCGAACTTCTCCTTCATGCCTTGTATTTAACATGCCACA
GAAAGCCCGGCCTACGCATCGTTCGAACGACAGTGCCCTTTCTAATTCAA
TGAATGGAAGAGGTCGTGCCCACCTCTTGGGGGATCCGAAAGACCTGGAG
AAAGGCGGAACAGACTGGCAAGCGGCTCGCAGCCAGCTCCCACCGCTGTG
GGTGGACGTGGTTGATCGGGTGGACGAGGCAATCCGAAACATCCAAGGGC
AAATGAAGGAACTATCCAGGCTACACCGGAAGCGGCTCCTGGTCTCTTTC
GACGAAAAGGCGGAAGCTGGCAAAGAGCAGGAGATCCTGGCCTTGACCGA
AGCCATTACGGAGCAGTTCCGGGTCGTGGAAAGAAAATTAACCGCTGTGG
GGGGGCAGATGGAGGGTGAAAGCGACGCTGAGGTCAAAGTACGTCGCAAT
CTCCAACGATCCATGGCCTCCAAGACGCAACGGCTCTCACACGCGTTCCG
GTTTCAGCAAAAAGACTACCTGAAAAAGCTCCGGGCGCAGAAGGAGGGGG
CGATGGGCGGGGGTGAGTTTGCCTTCTTGGACAAGGACGAAGGCGGGGAA
CCAGTCCTAGTGCCGGACAATCGTTCAGAGACCGGCTTCCGACAAGCCCA
GGTGACGGTGCTTGAGAGCGCGGAGGCGCTGGTGCAGGAGCGTGACTCGG
AAATAGCGCGTATCGCCGAGGGAATCGAAGCGCTCGCCCACGTGATGAAA
CGGCTCGGGGAGCTCGTCATCGACCAAGGCTCCGTCCTGGATCGGATCGA
CTACAACATCGACATGGCCGTCGATCGCGTCCAGCAAGGTGTCACCCAAC
TGGAAGCAACGGAAAAAATCCAGAAACAAGGAGGAGCAACCTCCTGTATC
CTTACCCTCATCTTTCTGATCTTCGCCCTCCTTGTGGTGCAGGTGATCAA
GCACGCGCCTCGGAAACGGTAGCGAGAGGCAGGGATGGGGGTTGAATGGG
AAAAGGGATGGAGAGGGTTGTATGATACAAGGGCCGGGGAAGGATCAGGA
ACAGCGGACGGTGTATGATAGAGAGGGGCTTTTGATGTGTGCGCGTCTAA
GTGGCCGCTGCCAAGAAGGAAAGGAAAGAGGGGGTGAGACGCCCCTCTCA
TCGGCTTCCAATCACCGAACGAGCCCTCCCTCAAGCCTCCTGCTCACACG
AAGAAACCTGGGAGTTACCATGCTTGATTTGCTTTCTGGTTCAGGCGTTT
GTCTGGGAGGCGAACACGATGCGGTTGCCTGACGCACACGCATGCGTGGT
CAAGGGAGTCTGTTTTCCTCCTCAGCTTCTTTTC

protein sequence of rna2758

>rna2758-protein ID=rna2758-protein|Name=rna2758|organism=Nannochloropsis gaditana|type=polypeptide|length=644bp
MMTHEDYKDASVVDQTPTNNLAVKIQHKLEWHVESFKVQIRRSRAPGKGT
ASTTTQTTKTILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFD
GCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMSGGSR
TAARGLPEPGASQTSRGQSWQAEKMSSESMARRVEEVIATVKLEKCADTL
IGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSES
IFQTLKDLTTQGRIVIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQ
ALSYFQAALGIECPQHYNPADFVLELVSAEPGVPLQEELRRMDALSLAYA
QSFMKIQNPLPADDKHKALHDVRGQGASDWVFFKLNLWRGGLQLARDRIT
LILWAAVSALIGALFGVLYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVV
MRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCT
GMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTP
MIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVV
QQFIQFNPRKMGWNVGMLWILTAAFQVLTYVNLRVRLRASRSVK

mRNA from alignment at CM002459.1:1134063..1136152+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2758 ID=rna2758|Name=rna2758|organism=Nannochloropsis gaditana|type=mRNA|length=2090bp|location=Sequence derived from alignment at CM002459.1:1134063..1136152+ (Nannochloropsis gaditana)
ATGATGACGCACGAAGACTACAAGGACGCTTCCGTGGTTGATCAGACACC
TACGAACAATTTGGCCGTCAAAATTCAGCATAAATTGGAATGGCATGTGG
AATCTTTCAAGGTTCAGATTCGTCGCAGCCGTGCTCCCGGCAAAGGAACA
GCTTCAACAACAACCCAAACAACCAAAACTATATTGCAAAAAGTAGCGGG
TTGCGCGGTCAGTGGGGAGCTTACAGCAATCCTAGGGCCCTCAGGTGCAG
GTAAAACAACGCTGCTAGAATGCATCTCGCTGCGGAACAGGAATTTCGAT
GGTTGTGTGCAGTATGACGGGCAGGCCCCCGAGGGGAGGTTCTTCACACT
CTCAGCCTTTGTCCACCAGGCAGACATGCTGTATGGCTTTCTAACACCCC
GAGAGCATTTGACTTTTCACGCGATCGCTCGGATGAGCGGTGGTAGTCGG
ACAGCTGCGCGGGGACTGCCCGAGCCGGGTGCCTCCCAGACATCCCGTGG
ACAAAGCTGGCAGGCAGAGAAAATGTCTTCAGAAAGCATGGCGAGACGGG
TCGAAGAAGTGATTGCGACCGTAAAACTGGAGAAATGTGCCGACACCTTG
ATCGGGGGTTCGGACCCCGTGTTTAACGTCAAGGGTATTTCGGGGGGAGA
ACGCAAACGGCTGACGATCGCAACCGAGCTTTTGCAGACGAACGAGATAA
TCTTCCTGGACGAGCCGTCCTCGGGCCTCGATTCAGTCATGTCGGAATCG
ATTTTTCAAACCCTCAAGGACTTGACGACCCAAGGCCGGATCGTCATCGC
CACCGTCcattgcccctcctccaagacctACCACCTCTTCTCGAACCTGA
TCCTCCTCACCTGCGACGGCCGCCTGGCGTACTCCGGCCCTGCCGCACAG
GCCCTGTCGTATTTCCAGGCCGCGTTGGGAATTGAATGTCCGCAGCATTA
CAACCCGGCGGATTTTGTCCTGGAGCTGGTGTCGGCGGAACCGGGGGTGC
CCCTCCAAGAAGAACTCCGGCGCATGGACGCCCTCTCTCTTGCGTACGCG
CAGTCGTTCATGAAAATTCAGAACCCGCTGCCTGCCGATGACAAGCACAA
GGCCTTGCACGACGTGCGTGGACAAGGTGCGAGCGATTGGGTTTTCTTCA
AGCTGAACTTATGGCGGGGCGGCTTGCAGCTGGCCCGGGACCGGATAACG
TTGATCCTTTGGGCCGCCGTGAGTGCCTTGATAGGTGCGCTGTTTGGGGT
CCTGTACTGGCAACTGGCGGCGAGCAATTGGCGCAACCTGATGGGCCTGA
TCTTTTCGGCCGTGGTGGGGAACGTGTTCACGGGCTGCCTGGGAGTGGTG
ATGCGTTTTCCCATGGAGTGGACCCTGGTAGTCCGAGAGTTTTCCAGCGG
CGCGAACGCCGTGGGCCCCTACATGATCGCCCGCTTCTTCACCACCTTGC
CCCTGTCCTACGGCCCAGTCCTGATGTCTTCAATCATCTATTGGTGCACC
GGCATGGATCCCGACGCCGGAACCTACCTGATCTTCGTCTTgatcttcgt
ctccttcaaCTGGTCCTGTTTCTCGCTCGGGCAGtggatctcctccttct
ccgccaaTCCGCTGGTGGCGATGACGATCATGCCAGGCTTTGTAACGTGA
GTGCGGGAATGGGGTGTcgcgagggcgggatgggcACACGGAATCTCTTT
GCTTGGTTTCTGTCCCGCACGGACACTCCAAATGAGTGCCTTgactcctc
catcttttcaCCGCTTCTCCCCCGGTTTTCTGTCCCTATTTCTCTTTGTA
GCCCCATGATCATGTTCTCCGGCCTCCTGATCGAGCGCAGCAGTGTGCCC
GTCTGGCTGGCCTGGATCGAAGACGTCTCCGTCGTCAACTATGCCTTCGA
TACCTTGATGGCCCAACAGATGCACATTTTGCCGGGGAACCAGGGAGAAG
TGGTGCAACAGTTCATCCAATTTAACCCCCGGAAAATGGGCTGGAATGTT
GGAATGTTGTGGATCCTAACTGCAGCCTTCCAAGTGCTCACGTATGTGAA
TCTCAGAGTGCGTCTGAGGGCATCCCGGTCCGTCAAGTAG

Coding sequence (CDS) from alignment at CM002459.1:1134063..1136152+

>rna2758 ID=rna2758|Name=rna2758|organism=Nannochloropsis gaditana|type=CDS|length=3870bp|location=Sequence derived from alignment at CM002459.1:1134063..1136152+ (Nannochloropsis gaditana)
ATGATGACGCACGAAGACTACAAGGACGCTTCCGTGGTTGATCAGACACC
TACGAACAATTTGGCCGTCAAAATTCAGCATAAATTGGAATGGCATGTGG
AATCTTTCAAGGTTCAGATTCGTCGCAGCCGTGCTCCCGGCAAAGGAACA
GCTTCAACAACAACCCAAACAACCAAAACTATATTGCAAAAAGTAGCGGG
TTGCGCGGTCAGTGGGGAGCTTACAGCAATCCTAGGGCCCTCAGGTGCAG
GTAAAACAACGCTGCTAGAATGCATCTCGCTGCGGAACAGGAATTTCGAT
GGTTGTGTGCAGTATGACGGGCAGGCCCCCGAGGGGAGGTTCTTCACACT
CTCAGCCTTTGTCCACCAGGCAGACATGCTGTATGGCTTTCTAACACCCC
GAGAGCATTTGACTTTTCACGCGATCGCTCGGATGAGCGGTGGTAGTCGG
ACAGCTGCGCGGGGACTGCCCGAGCCGGGTGCCTCCCAGACATCCCGTGG
ACAAAGCTGGCAGGCAGAGAAAATGTCTTCAGAAAGCATGGCGAGACGGG
TCGAAGAAGTGATTGCGACCGTAAAACTGGAGAAATGTGCCGACACCTTG
ATCGGGGGTTCGGACCCCGTGTTTAACGTCAAGGGTATTTCGGGGGGAGA
ACGCAAACGGCTGACGATCGCAACCGAGCTTTTGCAGACGAACGAGATAA
TCTTCCTGGACGAGCCGTCCTCGGGCCTCGATTCAGTCATGTCGGAATCG
ATTTTTCAAACCCTCAAGGACTTGACGACCCAAGGCCGGATCGTCATCGC
CACCGTCcattgcccctcctccaagacctACCACCTCTTCTCGAACCTGA
TCCTCCTCACCTGCGACGGCCGCCTGGCGTACTCCGGCCCTGCCGCACAG
GCCCTGTCGTATTTCCAGGCCGCGTTGGGAATTGAATGTCCGCAGCATTA
CAACCCGGCGGATTTTGTCCTGGAGCTGGTGTCGGCGGAACCGGGGGTGC
CCCTCCAAGAAGAACTCCGGCGCATGGACGCCCTCTCTCTTGCGTACGCG
CAGTCGTTCATGAAAATTCAGAACCCGCTGCCTGCCGATGACAAGCACAA
GGCCTTGCACGACGTGCGTGGACAAGGTGCGAGCGATTGGGTTTTCTTCA
AGCTGAACTTATGGCGGGGCGGCTTGCAGCTGGCCCGGGACCGGATAACG
TTGATCCTTTGGGCCGCCGTGAGTGCCTTGATAGGTGCGCTGTTTGGGGT
CCTGTACTGGCAACTGGCGGCGAGCAATTGGCGCAACCTGATGGGCCTGA
TCTTTTCGGCCGTGGTGGGGAACGTGTTCACGGGCTGCCTGGGAGTGGTG
ATGCGTTTTCCCATGGAGTGGACCCTGGTAGTCCGAGAGTTTTCCAGCGG
CGCGAACGCCGTGGGCCCCTACATGATCGCCCGCTTCTTCACCACCTTGC
CCCTGTCCTACGGCCCAGTCCTGATGTCTTCAATCATCTATTGGTGCACC
GGCATGGATCCCGACGCCGGAACCTACCTGATCTTCGTCTTgatcttcgt
ctccttcaaCTGGTCCTGTTTCTCGCTCGGGCAGtggatctcctccttct
ccgccaaTCCGCTGGTGGCGATGACGATCATGCCAGGCTTTGTAACCCCC
ATGATCATGTTCTCCGGCCTCCTGATCGAGCGCAGCAGTGTGCCCGTCTG
GCTGGCCTGGATCGAAGACGTCTCCGTCGTCAACTATGCCTTCGATACCT
TGATGGCCCAACAGATGCACATTTTGCCGGGGAACCAGGGAGAAGTGGTG
CAACAGTTCATCCAATTTAACCCCCGGAAAATGGGCTGGAATGTTGGAAT
GTTGTGGATCCTAACTGCAGCCTTCCAAGTGCTCACGTATGTGAATCTCA
GAGTGCGTCTGAGGGCATCCCGGTCCGTCAAGTAGATGATGACGCACGAA
GACTACAAGGACGCTTCCGTGGTTGATCAGACACCTACGAACAATTTGGC
CGTCAAAATTCAGCATAAATTGGAATGGCATGTGGAATCTTTCAAGGTTC
AGATTCGTCGCAGCCGTGCTCCCGGCAAAGGAACAGCTTCAACAACAACC
CAAACAACCAAAACTATATTGCAAAAAGTAGCGGGTTGCGCGGTCAGTGG
GGAGCTTACAGCAATCCTAGGGCCCTCAGGTGCAGGTAAAACAACGCTGC
TAGAATGCATCTCGCTGCGGAACAGGAATTTCGATGGTTGTGTGCAGTAT
GACGGGCAGGCCCCCGAGGGGAGGTTCTTCACACTCTCAGCCTTTGTCCA
CCAGGCAGACATGCTGTATGGCTTTCTAACACCCCGAGAGCATTTGACTT
TTCACGCGATCGCTCGGATGAGCGGTGGTAGTCGGACAGCTGCGCGGGGA
CTGCCCGAGCCGGGTGCCTCCCAGACATCCCGTGGACAAAGCTGGCAGGC
AGAGAAAATGTCTTCAGAAAGCATGGCGAGACGGGTCGAAGAAGTGATTG
CGACCGTAAAACTGGAGAAATGTGCCGACACCTTGATCGGGGGTTCGGAC
CCCGTGTTTAACGTCAAGGGTATTTCGGGGGGAGAACGCAAACGGCTGAC
GATCGCAACCGAGCTTTTGCAGACGAACGAGATAATCTTCCTGGACGAGC
CGTCCTCGGGCCTCGATTCAGTCATGTCGGAATCGATTTTTCAAACCCTC
AAGGACTTGACGACCCAAGGCCGGATCGTCATCGCCACCGTCcattgccc
ctcctccaagacctACCACCTCTTCTCGAACCTGATCCTCCTCACCTGCG
ACGGCCGCCTGGCGTACTCCGGCCCTGCCGCACAGGCCCTGTCGTATTTC
CAGGCCGCGTTGGGAATTGAATGTCCGCAGCATTACAACCCGGCGGATTT
TGTCCTGGAGCTGGTGTCGGCGGAACCGGGGGTGCCCCTCCAAGAAGAAC
TCCGGCGCATGGACGCCCTCTCTCTTGCGTACGCGCAGTCGTTCATGAAA
ATTCAGAACCCGCTGCCTGCCGATGACAAGCACAAGGCCTTGCACGACGT
GCGTGGACAAGGTGCGAGCGATTGGGTTTTCTTCAAGCTGAACTTATGGC
GGGGCGGCTTGCAGCTGGCCCGGGACCGGATAACGTTGATCCTTTGGGCC
GCCGTGAGTGCCTTGATAGGTGCGCTGTTTGGGGTCCTGTACTGGCAACT
GGCGGCGAGCAATTGGCGCAACCTGATGGGCCTGATCTTTTCGGCCGTGG
TGGGGAACGTGTTCACGGGCTGCCTGGGAGTGGTGATGCGTTTTCCCATG
GAGTGGACCCTGGTAGTCCGAGAGTTTTCCAGCGGCGCGAACGCCGTGGG
CCCCTACATGATCGCCCGCTTCTTCACCACCTTGCCCCTGTCCTACGGCC
CAGTCCTGATGTCTTCAATCATCTATTGGTGCACCGGCATGGATCCCGAC
GCCGGAACCTACCTGATCTTCGTCTTgatcttcgtctccttcaaCTGGTC
CTGTTTCTCGCTCGGGCAGtggatctcctccttctccgccaaTCCGCTGG
TGGCGATGACGATCATGCCAGGCTTTGTAACCCCCATGATCATGTTCTCC
GGCCTCCTGATCGAGCGCAGCAGTGTGCCCGTCTGGCTGGCCTGGATCGA
AGACGTCTCCGTCGTCAACTATGCCTTCGATACCTTGATGGCCCAACAGA
TGCACATTTTGCCGGGGAACCAGGGAGAAGTGGTGCAACAGTTCATCCAA
TTTAACCCCCGGAAAATGGGCTGGAATGTTGGAATGTTGTGGATCCTAAC
TGCAGCCTTCCAAGTGCTCACGTATGTGAATCTCAGAGTGCGTCTGAGGG
CATCCCGGTCCGTCAAGTAG

Synonyms

Publications