rna2754, rna2754 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2754
Unique Name	rna2754
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2012
Alignment location	CM002459.1:1126494..1129032 -

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Properties


Property Name	Value
Product	general transcription factor iih subunit 4
Orig transcript id	gnl\|cribi\|Naga_100008g136.7921.mrna
Orig protein id	gnl\|cribi\|Naga_100008g136.7921
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1126494..1129032 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g136	gene2635	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28029.1	cds2746	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2754	rna2754-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1126494..1129032-
coding sequence from alignment at CM002459.1:1126494..1129032-

mRNA sequence

>rna2754 ID=rna2754|Name=rna2754|organism=Nannochloropsis gaditana|type=mRNA|length=2012bp
ATGGAGACGACTGCCATTCCGCTGACACGAACAGCGGCCCGTGTTCTTTG
CCCTTTGTGTGGTTTGTCCATGGAAAGTAATGCTGCCAACCGCTGCGGAA
ATTGCGTGCGAAATGAGATCGATTTGCAAGGGGAAATCAAGCCCTCCCGT
CCTTTGATCCAATGCAAGCAATGCTTTCACTGGCAGGCCAAATCGAAACA
TTGGGTGGCGGCTGAGCTTGAGTCCCGCGAACTACTGGCATTGGTGCTCA
AGTTTGTCCCGGGCCTTCACAAAGGTGGAAGTGGACCGAGGGGTGGAGAC
GGACCTATGGAGGTGGTGGAGGCAGGATGGATTTGGACGGAGCCGCACTC
GAAACGGTTGAAGTTGAAGTTGACGGTTCGAAAAGAGGTACTGAACGGCG
TGATGGTGCAGCAAAGGGTGCAAGCCGAGTTTGTCGTGCGGACCATACAG
TGCGACGCCTGCGCCCTGTCCTACACGGAGCAGGCCTGGAAGGCCGTGTG
TCAGCTTCGACAGCGGGTTACCCACAAACGGACTTTTTTTTTCCTGGAAC
AGCTCCTTCTCGCCCGGAAGATGGAGAGCAAGATCTTGGACATGGAGCTG
ACCCGCCACGGGATGGACCTATACTTTGGAGACAAGAATACAGCCCTGCA
ATTTTTGGCCTTCCTTCAAACCGCCGTCCCCATGCGGAGTAAAACTACCC
GGAAGTTGATCGCCGAAGACCGGCAGAACAACGTCCACCGTTCCCAATGG
TCCATGTCCGTTGATATCGTCCCTCTCTGCAAAGACGACCTCTGTTTCCT
GCCTCCCGGCGGGGGGGGAGTGCAGGGGCTGGTGCTGGTCTCCCGGGTCA
CCGCCGTCGTTCAATTCCTCGACCCTTTGACCTTAAAAACGGGGGAAATG
ACCGCTGCCAAGTATTGGAAAGCTCCTGTCGAGTGCTTGATGCAAAGCGG
GGACCTGATCCCCTACGAAGTGCTGGACGTGGAGCTAATACGCCCACGGC
GGGGGGAGGGGAAAGGAGGGCGGGACAAGGGACAGAGGAAGGCAGGATAC
CCGGAGGGAGGGAACGGTCCATCTCGGAAGTGGCAGCTTGCGGAGGTCGA
AATCATTAAGTCTTCGGATTTTGGGGTCCGGGACGTGACGCACCGGGTCG
TGTCGCACCTGGGTCATCTCCTTGCGGTTGGGGACACTGTGCTGGGCTAC
GATCTGGGCACTGCCACGGCGCTGGGGGAGAGGGAAGGGGGATGGCGGGG
AATGAAACACGAGCCGCCCGACGTGGTGTTGGTGCGGCGGGTGGACGTGG
AGAAAAAAGGCGCGAAAAGAGAGAGGAGGCGGTTGCGGCGTTTGCAGGCC
CGGCGGGCCCGGCGGGCAGCGGAAAGGGAGGGGAATGGGGAGGGAGCGGG
GGCGCGGGGAAGGGATAGGAAGGAGGAAGTGGAAGGGGAGGAAAAAGCGG
AGGCGGATTTTTTGGCCTTTGCGGAGGAATTGGAGGAGGACTTAGAGATG
CAGGCGTTGATTGCGCGGGAAGAGTCTGCCGCGAGGCAACGCATGGCAAT
GGAGGAAGAGGGGGAGGGATGGGAAGAGGAGGAGAGGGGCTGGGAGGAGC
TGGGAGAAGAAGGGTGGAACGACGGCACGGTGGGCGGAAGAGAGGACGGG
CAATAAGGGACAAAAGAAGACCAGAGGAGGAGAAAGCGCCCTGCCTTCAT
CTTCAGCATGTCTAGGGCTGGAAAACCAAGGGTGTGGGGTTGGTTTGGGC
GGAAGAAAGGGGGGATCATGTAAGTGGACACCCCTGCTTGAGCACGGGGA
TGTACAGGGGCGAAGCGTTGCAACACACTGTAAAGGCTGGTAGCAGACCG
TGGGAAGGCGGTGCTCGATCTGCCGAGTCAAGGCGACCAGAGACGCGTAC
ACAAGCGAATTGAAAGCATTCGGGCCAGACATGCTGAGATGCGAGACATC
TGTCAAACATCAGGGTTCCTGTTGGACGGTGACACTAACGTGAGCCACAT
TGTTAGTCTTTT

protein sequence of rna2754

>rna2754-protein ID=rna2754-protein|Name=rna2754|organism=Nannochloropsis gaditana|type=polypeptide|length=513bp
MFKPTYRPELHGTEDGSAHVATVFDLLGTLPRISLDRLYGLEDLGSASSS
CTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRF
VTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRY
RLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETY
MCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGE
GEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVI
AHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQ
DDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVRPEGRENTKVRVGGC
AWRHWASWICGLRKGRRPRTVTFLSSPSHPVTRTSIQARAQPLATSPPLL
LIVCLIPFPLLPPFPYRSSAWWIPPNSPSSLRPTTSSLPTPPPLCTWRCC
GFLRTFAAAFPTL

mRNA from alignment at CM002459.1:1126494..1129032-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2754 ID=rna2754|Name=rna2754|organism=Nannochloropsis gaditana|type=mRNA|length=2539bp|location=Sequence derived from alignment at CM002459.1:1126494..1129032- (Nannochloropsis gaditana)
AATACAGGACCGGCACATGACATGAATTGCTTCGTGGACACGCAAGCACT
TAATTGACGCGGTCAAGCCGCCGGAAATTGCCTGACCCTGCGCCCTCCTG
GCGCCCTCAAACAGTCAGGGTGATGTTTAAGCCCACGTACCGTCCTGAAC
TTCATGGCACGGAAGATGGATCCGCACACGTGGCCACCGTATTCGATTTG
CTGGGAACGCTTCCTCGTATCTCGCTCGACCGATTGTACGGCCTGGAAGA
CTTGGGTAGTGCCTCCTCCTCGTGCACGCCCTCAGCCTCCCCCTTCCCCT
GGACCTGCCGCGCCGTTTTTCAGTCGCTGACACCTTTAGCCAAGCAGTAC
GTCATGCGGCTCCTATGCTTGCCGGAAGGGGTCAGACAAAGCTCTTTGAA
GAGCTGGGTGGAACCAAGGTTTGTCACGGGCCATCAAAAAGCCGTCCAAC
AGCTTGACAGGTTGCGAATTTTGCTTTCTTCAGAGGACGAAGATATAGAA
GAAGACGAGGACGACAGGAACGGCGGATACGGGAGACTGGGCAATGGGAA
AGGGCGCCCGAGCCCAAGGTACAGGCTCAATGGCCATTTTCGCAAGAATT
TACAAGCGGCTTTGACGAACCAGTTGGCAGGTCCATGGAGCATGGGAACG
GCTCTGGAAGAGAAAGCAGCGCCCGATGCAGCTTTGCCTCCATTGCTTCC
GTCGGAAGAGCTGGAAACATACATGTGTGACAAGTGGAACGGGGTCCTGC
ACTATTTGGTTGGGGCCGAGGGGGCGGGTTTCCCCGACCCTGCGGAGGAG
GTGAAGCAATTCTTGGCAGACACGGGAATGATGGCGGTCCCGGAGGAGGA
AGGGGAGGAGGGGGAGGGGGAGGGGGAGGGGGACGTGGTATTGATGGAAG
TGGAAGGGACGATGGGGAAGGAAGGGAAGGGAAGGCGGCACTTGCGCATC
ACGAACGCCGGCATCGATTTTTTGTTGAAGGACGTCCATCTTCAGGTCTG
GCGCTTCGTTGCCTACGTGATCGCGCACGAGGCAGCTTCCCGCGACGAGA
TCCTTACCTTCCTCTTTCAACTCTCCTACTGCGCAGTGGGGCGGCCGTAC
CCGGTCAGGGCCCTGTCGCCGACCCAGCAGGCCCTTCTCGAGAAGTTCAT
CTCCTTCGGCCTCATTTATCAGGACGACCGTCATTCGCGCCATTTTTATC
CGACTGCGGTGGCGGTGAATTTGATTTTTGGCGGCACGGTCCAGGAAGAG
CGCCTGCGTCGCGGCCACGGGCATGTCAGACCCGAGGGTCGGGAGAATAC
GAAGGTGAGAGTGGGGGGATGTGCGTGGAGGCATTGGGCGTCGTGGATCT
GTGGGTTAAGGAAAGGGAGGCGTCCTCGCACCGTCACCTTCCTATCTTCC
CCCTCCCATCCCGTCACCCGCACGTCCATCCAGGCCAGGGCACAGCCCTT
AGCGACCTCCCCTCCTTTGCTTCTCATTGTGTGCCTGATCCCGTTCCCCC
TCCTTCCTCCCTTTCCCTACAGGAGCTCCGCCTGGTGGATCCCTCCCAAC
TCGCCGTCATCGTTGAGACCAACTACCAGCTCGTTGCCTACACCTCCTCC
TCTTTGCACGTGGAGATGCTGCGGATTTTTACGGACGTTCGCTGCCGCCT
TCCCAACGTTGTGATTGGCTTTATCACCCGTGCCAGTGTCCGCCGCGCCA
TGGCTTCCGGCATCACCGCCGCCACCATCCTCTCCTTCTTGAAGACCCAC
ACCCACGTGGCGGTCCGTGCGGGAAAAGGCAGGCTTCTCCCCGAGAACGT
GGAGGCGCAGATCGAGCTCTGGCACCAGGAGCGAAGCCGGGTGAAATTTG
AGGAGGTGATGATGATCGATTTGTCCAGTTTAATGGTGGAGGAGTTCGAG
GAGGTACGGACGTATGCAGAGAACCTGGCGGTCGTGTGTTGGGCGAGCCA
AAGGAGGGGGGGGCGGGCTGGGGAGGCAGAGGAAGAGGAGGAAGAGAGGG
GCATGGGGGAAATCCGGGGTCCCGAGGGGGGGCGTCGTAAGCGCAAGCAG
TTACTAGCGGTGCGACCGGAAGGTCTAGAGAGGATTCGAGCGTTTGTGGA
AGACCGAGGTTATACGCAGCACTAGCAGCTATGGGCGAGGAGCGGGAAGG
CGGGCGGGAGGGCGGGCGGGGGAGTTGGACGGTCCATGCCGCTGGAGCTA
GGGGGAAGAGGGAATTTCCAATATACCCACGGCGATCTCGGTGCTCGGGC
CTGCCTCTAGACCTGGACCCATGCTTGTATGCGCATGGAGGGGGGTTTGC
ACCCTAGACATTCACGTGTAACTATAGTCATTCGGATGTAATTCTCTGCT
GGCGTGACCTAGACATAGAAAAGCAAGTCTTCGATCAGTCCTTCGCATTG
ATTTGGTACTTGATAATCACTAATTCGTGTACGACGTTACGCTCCCTGCG
ACAAGCTGTCCCCTGAGTAAGTTGATGGATTTCTTCATCAATACGCGTCA
AAGTCAACACAGAAACACGCTTTTGAGAGCGTGAAAGTC

Coding sequence (CDS) from alignment at CM002459.1:1126494..1129032-

>rna2754 ID=rna2754|Name=rna2754|organism=Nannochloropsis gaditana|type=CDS|length=1542bp|location=Sequence derived from alignment at CM002459.1:1126494..1129032- (Nannochloropsis gaditana)
ATGTTTAAGCCCACGTACCGTCCTGAACTTCATGGCACGGAAGATGGATC
CGCACACGTGGCCACCGTATTCGATTTGCTGGGAACGCTTCCTCGTATCT
CGCTCGACCGATTGTACGGCCTGGAAGACTTGGGTAGTGCCTCCTCCTCG
TGCACGCCCTCAGCCTCCCCCTTCCCCTGGACCTGCCGCGCCGTTTTTCA
GTCGCTGACACCTTTAGCCAAGCAGTACGTCATGCGGCTCCTATGCTTGC
CGGAAGGGGTCAGACAAAGCTCTTTGAAGAGCTGGGTGGAACCAAGGTTT
GTCACGGGCCATCAAAAAGCCGTCCAACAGCTTGACAGGTTGCGAATTTT
GCTTTCTTCAGAGGACGAAGATATAGAAGAAGACGAGGACGACAGGAACG
GCGGATACGGGAGACTGGGCAATGGGAAAGGGCGCCCGAGCCCAAGGTAC
AGGCTCAATGGCCATTTTCGCAAGAATTTACAAGCGGCTTTGACGAACCA
GTTGGCAGGTCCATGGAGCATGGGAACGGCTCTGGAAGAGAAAGCAGCGC
CCGATGCAGCTTTGCCTCCATTGCTTCCGTCGGAAGAGCTGGAAACATAC
ATGTGTGACAAGTGGAACGGGGTCCTGCACTATTTGGTTGGGGCCGAGGG
GGCGGGTTTCCCCGACCCTGCGGAGGAGGTGAAGCAATTCTTGGCAGACA
CGGGAATGATGGCGGTCCCGGAGGAGGAAGGGGAGGAGGGGGAGGGGGAG
GGGGAGGGGGACGTGGTATTGATGGAAGTGGAAGGGACGATGGGGAAGGA
AGGGAAGGGAAGGCGGCACTTGCGCATCACGAACGCCGGCATCGATTTTT
TGTTGAAGGACGTCCATCTTCAGGTCTGGCGCTTCGTTGCCTACGTGATC
GCGCACGAGGCAGCTTCCCGCGACGAGATCCTTACCTTCCTCTTTCAACT
CTCCTACTGCGCAGTGGGGCGGCCGTACCCGGTCAGGGCCCTGTCGCCGA
CCCAGCAGGCCCTTCTCGAGAAGTTCATCTCCTTCGGCCTCATTTATCAG
GACGACCGTCATTCGCGCCATTTTTATCCGACTGCGGTGGCGGTGAATTT
GATTTTTGGCGGCACGGTCCAGGAAGAGCGCCTGCGTCGCGGCCACGGGC
ATGTCAGACCCGAGGGTCGGGAGAATACGAAGGTGAGAGTGGGGGGATGT
GCGTGGAGGCATTGGGCGTCGTGGATCTGTGGGTTAAGGAAAGGGAGGCG
TCCTCGCACCGTCACCTTCCTATCTTCCCCCTCCCATCCCGTCACCCGCA
CGTCCATCCAGGCCAGGGCACAGCCCTTAGCGACCTCCCCTCCTTTGCTT
CTCATTGTGTGCCTGATCCCGTTCCCCCTCCTTCCTCCCTTTCCCTACAG
GAGCTCCGCCTGGTGGATCCCTCCCAACTCGCCGTCATCGTTGAGACCAA
CTACCAGCTCGTTGCCTACACCTCCTCCTCTTTGCACGTGGAGATGCTGC
GGATTTTTACGGACGTTCGCTGCCGCCTTCCCAACGTTGTGA

Synonyms

Publications