EWM28029.1, cds2746 (CDS) Nannochloropsis gaditana

Overview
NameEWM28029.1
Unique Namecds2746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1127369..1128910 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28029.1
Productgeneral transcription factor iih subunit 4
Orig transcript idgnl|cribi|Naga_100008g136.7921.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1127369..1128910 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0030234enzyme regulator activity
GO:0008135translation factor activity, RNA binding
GO:0004003ATP-dependent DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000439transcription factor TFIIH core complex
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2
Homology
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|585110370|gb|EWM28029.1| (general transcription factor iih subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 1051.97 bits (2719), Expect = 0.000e+0
Identity = 513/513 (100.00%), Postives = 513/513 (100.00%), Query Frame = 0
Query:    1 MFKPTYRPELHGTEDGSAHVATVFDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVRPEGRENTKVRVGGCAWRHWASWICGLRKGRRPRTVTFLSSPSHPVTRTSIQARAQPLATSPPLLLIVCLIPFPLLPPFPYRSSAWWIPPNSPSSLRPTTSSLPTPPPLCTWRCCGFLRTFAAAFPTL 513
            MFKPTYRPELHGTEDGSAHVATVFDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVRPEGRENTKVRVGGCAWRHWASWICGLRKGRRPRTVTFLSSPSHPVTRTSIQARAQPLATSPPLLLIVCLIPFPLLPPFPYRSSAWWIPPNSPSSLRPTTSSLPTPPPLCTWRCCGFLRTFAAAFPTL
Sbjct:    1 MFKPTYRPELHGTEDGSAHVATVFDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVRPEGRENTKVRVGGCAWRHWASWICGLRKGRRPRTVTFLSSPSHPVTRTSIQARAQPLATSPPLLLIVCLIPFPLLPPFPYRSSAWWIPPNSPSSLRPTTSSLPTPPPLCTWRCCGFLRTFAAAFPTL 513          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|298705308|emb|CBJ48998.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 186.808 bits (473), Expect = 3.464e-49
Identity = 124/355 (34.93%), Postives = 174/355 (49.01%), Query Frame = 0
Query:   22 TVFDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIA----HEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGT 372
             VFD L  LP  +LD+LYG       ++      S   WTCRA+ QSL  LAKQ+VMRLL +   V +  LKSWV+  +   H  +V++L  LR+LL S             GG              Y+LN  FR+NLQ AL      PW     L    +P           ++E  M  +W  VL++LVG++  G   P   V +F+ ++G+M                            +  +GR  LRIT+ G +F+LK+ H+Q W  V  +I      +   RDE+L FLFQLSYC VG  YP+ AL+ TQ+ L + F+  GL+++    S  FYPT++AVNLIFG +
Sbjct:   22 NVFDYLERLPPDALDKLYGA---APPAADGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSA------------GGQ------------EYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTV-------AKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLM----------------------------RPVRGRGALRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSS 314          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|953492940|emb|CEG44886.1| (general transcription factor iih [Plasmopara halstedii])

HSP 1 Score: 169.859 bits (429), Expect = 3.109e-43
Identity = 125/373 (33.51%), Postives = 174/373 (46.65%), Query Frame = 0
Query:   24 FDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQ------KAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVI----AHEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVR 386
            F+ L TLP  +L+RLY  +D               PW C+AVFQ+L PLA+Q+VMRLL     V +  L+ WV P     H+       A+ +LD LR+ +              NGGY        RP P       F+K L  AL+N    PW  G     K   +        +++LE Y   +W+ VLHY+VG+      +P + V   L  T ++   E +                            R L IT+ G +F+LKD+H+Q+W F+   I          +++IL FLFQLSYC  G  Y V  L+ TQQ LL  FI FGL+++   +S  FY T++AVNLIFGG+  +ER      HVR
Sbjct:    4 FEFLETLPAATLERLY--QD---------------PWACQAVFQALPPLAQQFVMRLLPTNTSVPRDLLEKWVVPLPGDSHEMPPQFNAALHKLDGLRVFIQE------------NGGY--------RPHPL------FQKQLMYALSNLGGSPWERGRLRLPKDPENT-----FAAKDLERYARARWDSVLHYMVGSTAV--QEPPQSVVDILLRTKLLQSSEADS---------------------------RALHITDTGYEFMLKDIHVQMWTFMLEYIRTLDNTGTLKQEDILQFLFQLSYCQTGGYYAVADLTQTQQLLLGDFIDFGLLFRKRSNSDRFYTTSLAVNLIFGGSKGQER-----SHVR 294          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|1173956084|gb|OQS02961.1| (general transcription factor IIH subunit [Thraustotheca clavata])

HSP 1 Score: 168.318 bits (425), Expect = 7.271e-43
Identity = 116/358 (32.40%), Postives = 168/358 (46.93%), Query Frame = 0
Query:   24 FDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHE----AASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEER 377
            F+ L TLP  S+DRL+                   PW C+AVFQSL  LA+Q VMRLL        SSL  WV+P  +     ++++L  LR+L  S                   GNG+       +LN +F+  L+AAL++    PW  G    ++  P +A+       +LE Y   +W+ VLH++VG+       P E+V Q L  T +M   +E+                           RR L IT+ G +F+LKD+H Q W F+   I +       S +++L FLFQ+SYC + + Y V  LS  Q+ LL   +  GL+Y+    S  FY T++AVNLIFGG   + R
Sbjct:    4 FEYLTTLPVASVDRLFN-----------------DPWACQAVFQSLPSLAQQVVMRLLFSHSPTPLSSLNEWVKPSAIETINLSIEKLCHLRVLSKS-------------------GNGQ------IQLNPNFKAQLKAALSSLGGSPWEEGRKKIKQEKPISAV-------QLEHYARKRWDSVLHFMVGSTAE--EAPPEKVIQILEQTRLMQASQED---------------------------RRKLHITDTGYEFMLKDIHAQTWIFILEYIKNIDRSGVMSAEDMLQFLFQMSYCQMHQYYRVEDLSTNQKKLLGDLVQLGLLYRSSNKSDRFYTTSLAVNLIFGGLAGQTR 283          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|553189107|ref|XP_005854932.1| (transcription initiation factor TFIIH subunit 4, partial [Nannochloropsis gaditana CCMP526] >gi|422294120|gb|EKU21420.1| transcription initiation factor TFIIH subunit 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.91 bits (385), Expect = 9.086e-40
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0
Query:  323 GRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVRPEGRENTK 394
            GRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHV PEGRENTK
Sbjct:    1 GRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGHVGPEGRENTK 72          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|813136107|ref|XP_012198659.1| (hypothetical protein SPRG_04339 [Saprolegnia parasitica CBS 223.65] >gi|641536556|gb|KDO30437.1| hypothetical protein SPRG_04339 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 156.377 bits (394), Expect = 1.964e-38
Identity = 112/359 (31.20%), Postives = 159/359 (44.29%), Query Frame = 0
Query:   24 FDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMM-AVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHE----AASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEER 377
            F+ L T P  S+DRL+  +D               PW C+AVFQSL  L++Q VMRLL       + ++ SWV          A+ +L  LR+L                           +      LN HF+  L+ AL++    PW  G        P AA+       +LE Y   +W+ VLH++VG+       P + V Q L  T +M A PE+                            RR L IT+ G +F+LKD+H Q W FV   I +       S +E+L FLFQ+SYC + + Y V  L+  QQ LL   +  GL+Y+ +  +  FY T++AVNLIFGG   + R
Sbjct:    4 FEYLATRPVASVDRLF--DD---------------PWACQAVFQSLPALSQQIVMRLLFAAGETTRDTILSWVHESSTDAMVAAIDKLSHLRVL--------------------------AKAPHGLALNTHFQAQLRTALSSLGGSPWEDGRQKLPAEKPIAAM-------DLENYARTRWDAVLHFMVGS--TAVQAPPDTVVQILEQTKLMQASPED----------------------------RRKLHITDTGYEFMLKDIHAQTWIFVLEYIKNIDKRGVMSAEEMLQFLFQMSYCQMHQYYAVADLTRNQQQLLGDLVELGLLYRSNSRATRFYTTSLAVNLIFGGLAGQTR 282          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|698823705|ref|XP_009844881.1| (hypothetical protein H257_17692 [Aphanomyces astaci] >gi|574100053|gb|ETV65642.1| hypothetical protein H257_17692 [Aphanomyces astaci])

HSP 1 Score: 153.295 bits (386), Expect = 2.376e-37
Identity = 113/359 (31.48%), Postives = 162/359 (45.13%), Query Frame = 0
Query:   24 FDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEG-VRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIA----HEAASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEER 377
            F+ LG+LP  S+DRLY  +D                W C+AVFQS++PLA+Q VMRLL   +G     ++  WV+         A+++L  LR+L                    R+ +G    +  Y LN  F+  L+ AL++    PW  G        P AA        ELE Y   +W+ VLH++VG+     P P   V   L  TG+M   + +                            R L IT+ G +F+LKD+H Q W FV   +         S +E+L FLFQ+SYC +   Y V  L+  QQ LL   +  GL+Y+    +  FY T++AVNLIFGG + + R
Sbjct:    4 FEFLGSLPGGSVDRLY--QD---------------AWACQAVFQSMSPLAQQIVMRLLFTNQGSYSHDAILQWVQDPAQVKMTAAIEKLRHLRVL--------------------RMAHG----TAEYVLNPVFQDQLKKALSSLGGSPWEAGRHKLPSEKPIAA-------AELEQYARKRWDAVLHFMVGSTAVAAPPPT--VIGILEHTGLMQPSKTDA---------------------------RALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILSAEEMLQFLFQMSYCRMNEYYAVADLTRHQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTR 285          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|669156558|ref|XP_008613841.1| (hypothetical protein SDRG_09671 [Saprolegnia diclina VS20] >gi|530734455|gb|EQC32697.1| hypothetical protein SDRG_09671 [Saprolegnia diclina VS20])

HSP 1 Score: 152.91 bits (385), Expect = 3.284e-37
Identity = 113/359 (31.48%), Postives = 159/359 (44.29%), Query Frame = 0
Query:   24 FDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVRQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMM-AVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHE----AASRDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEER 377
            F+ L T P  S+DRL+  +D               PW C+AVFQSL  L++Q VMRLL       + ++ SWV          A+ +L  LR+L                           +      LN HF+  L+ AL++    PW  G        P AAL       +LE Y   +W+ VLH++VG+       P + V Q L  T +M A PE+                            RR L IT+ G +F+LKD+H Q W FV   I +       S +E+L FLFQ+SYC + + Y V  L+  QQ LL   +  GL+Y+ +  +  FY T++AVNLIFGG   + R
Sbjct:    4 FEYLATRPVASVDRLF--DD---------------PWACQAVFQSLPALSQQIVMRLLFAAGETTRETILSWVLESATDAMVAAIDKLLHLRVL--------------------------TKAPHGLALNTHFQAQLRTALSSLGGSPWEDGRQKLPAEKPIAAL-------DLEHYARTRWDAVLHFMVGS--TAVQAPPDTVVQILEQTKLMQASPED----------------------------RRKLHITDTGYEFMLKDIHAQTWIFVLEYIKNIDKRGVMSAEEMLQFLFQMSYCQMHQYYAVADLTRNQQQLLGDLVELGLLYRSNSRATRFYTTSLAVNLIFGGLAGQTR 282          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|673052117|ref|XP_008880019.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574464342|gb|ETV91391.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 150.984 bits (380), Expect = 7.253e-37
Identity = 115/385 (29.87%), Postives = 169/385 (43.90%), Query Frame = 0
Query:   22 TVFDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGV-RQSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAAS----RDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEER----LRRGHGHVRPEGRENTKVRV 397
              F+ LG+LP  S+DRLY  +D                W C+AVFQSL+PLA+Q VMRLL          ++  WV+         A+++L  LR+L                    R+  G    S  Y LN  F++ L+ AL++    PW  G +      P       +P+ ELE Y   +W+ VLH++VG+     P PA  +                             ++E    M       R L IT+ G +F+LKD+H Q W FV   +           DE+L FLFQ+SYC +   Y V  L+  QQ LL   +  GL+Y+    +  FY T++AVNLIFGG + + R    + +G  H+     + +K R+
Sbjct:    2 NAFEFLGSLPGGSVDRLY--QD---------------AWACQAVFQSLSPLAQQIVMRLLFSNHATYAHDAILHWVQDAAQDKMTAAIEKLRHLRVL--------------------RVVQG----SLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKP-------IPAVELELYARKRWDSVLHFMVGSTAVAAP-PATVIG----------------------------ILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRANMTMSQGLDHITNYAADPSKSRL 309          
BLAST of EWM28029.1 vs. NCBI_GenBank
Match: gi|673052119|ref|XP_008880020.1| (hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574464343|gb|ETV91392.1| hypothetical protein, variant 2 [Aphanomyces invadans])

HSP 1 Score: 150.984 bits (380), Expect = 9.195e-37
Identity = 115/383 (30.03%), Postives = 169/383 (44.13%), Query Frame = 0
Query:   24 FDLLGTLPRISLDRLYGLEDLGSASSSCTPSASPFPWTCRAVFQSLTPLAKQYVMRLLCLPEGVR-QSSLKSWVEPRFVTGHQKAVQQLDRLRILLSSEDEDIEEDEDDRNGGYGRLGNGKGRPSPRYRLNGHFRKNLQAALTNQLAGPWSMGTALEEKAAPDAALPPLLPSEELETYMCDKWNGVLHYLVGAEGAGFPDPAEEVKQFLADTGMMAVPEEEGEEGEGEGEGDVVLMEVEGTMGKEGKGRRHLRITNAGIDFLLKDVHLQVWRFVAYVIAHEAAS----RDEILTFLFQLSYCAVGRPYPVRALSPTQQALLEKFISFGLIYQDDRHSRHFYPTAVAVNLIFGGTVQEER----LRRGHGHVRPEGRENTKVRV 397
            F+ LG+LP  S+DRLY  +D                W C+AVFQSL+PLA+Q VMRLL          ++  WV+         A+++L  LR+L                    R+  G    S  Y LN  F++ L+ AL++    PW  G +      P       +P+ ELE Y   +W+ VLH++VG+     P PA  +                             ++E    M       R L IT+ G +F+LKD+H Q W FV   +           DE+L FLFQ+SYC +   Y V  L+  QQ LL   +  GL+Y+    +  FY T++AVNLIFGG + + R    + +G  H+     + +K R+
Sbjct:    4 FEFLGSLPGGSVDRLY--QD---------------AWACQAVFQSLSPLAQQIVMRLLFSNHATYAHDAILHWVQDAAQDKMTAAIEKLRHLRVL--------------------RVVQG----SLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKP-------IPAVELELYARKRWDSVLHFMVGSTAVAAP-PATVIG----------------------------ILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRANMTMSQGLDHITNYAADPSKSRL 309          
The following BLAST results are available for this feature:
BLAST of EWM28029.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110370|gb|EWM28029.1|0.000e+0100.00general transcription factor iih subunit 4 [Nannoc... [more]
gi|298705308|emb|CBJ48998.1|3.464e-4934.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|953492940|emb|CEG44886.1|3.109e-4333.51general transcription factor iih [Plasmopara halst... [more]
gi|1173956084|gb|OQS02961.1|7.271e-4332.40general transcription factor IIH subunit [Thrausto... [more]
gi|553189107|ref|XP_005854932.1|9.086e-4098.61transcription initiation factor TFIIH subunit 4, p... [more]
gi|813136107|ref|XP_012198659.1|1.964e-3831.20hypothetical protein SPRG_04339 [Saprolegnia paras... [more]
gi|698823705|ref|XP_009844881.1|2.376e-3731.48hypothetical protein H257_17692 [Aphanomyces astac... [more]
gi|669156558|ref|XP_008613841.1|3.284e-3731.48hypothetical protein SDRG_09671 [Saprolegnia dicli... [more]
gi|673052117|ref|XP_008880019.1|7.253e-3729.87hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|673052119|ref|XP_008880020.1|9.195e-3730.03hypothetical protein, variant 2 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2754rna2754Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications