rna2749, rna2749 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2749
Unique Name	rna2749
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1422
Alignment location	CM002459.1:1113818..1116046 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF1118
Orig transcript id	gnl\|cribi\|Naga_100008g127.7864.mrna
Orig protein id	gnl\|cribi\|Naga_100008g127.7864
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1113818..1116046 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g127	gene2630	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2749	rna2749-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27972.1	cds2741	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1113818..1116046+
coding sequence from alignment at CM002459.1:1113818..1116046+

mRNA sequence

>rna2749 ID=rna2749|Name=rna2749|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp
GCCCGCAAAAGACGGGGCACAATTGAAAAACCATACAGGGACGGGTGGTG
GGGCGGGCATACTGCATTAATTTTATACCCGGGCGACGTTGTGGTGAGTA
CCATGGAGAGGATCCTTTCTTCTCGCTGTTCGAAGGGGAGGAGACAAGAG
CAGGAACGCCTCGCTTCCTCGCCCTTTGCCCTTTGCCCTTTGCGGCACAC
ACCTACGAAAGAGGGTGTAAGGCCAGACTGAGATTGTATGGTTACAATAT
TGACCACAAATAAGCTGGGAATGCTGTTCATACGAAAAAGTAAGGTTGGT
ATTTGATACATGAGAAATGGAATAATTAACCATCTATAATACGAAATACG
GATCAAGTGCTTTTTGTACTCTTCGTGCCGCATCAAGTTCGCAAGGGTTT
GCAGTATGAGCATCATTCAAGAATCTCCTTTTTCAAACCTCGCCATTACA
GAAATCTCATGGGCGGCGGTCGAACTTTTCGTTTATCCCTTGGCGGTAAA
ATTGTCGTTCTCTCTACTCTTCTCGGGTCTACAAATGCCTGGCGCTCGCC
ACCTCGACTTCACACACCCCTAGCACACTTTGAGACTCTTTCAACGTCGT
CAGCCATTGATGTTCATTCATTTCCCTCCTCGGTTGCCAGCCGGCTTGGA
TCAGCCATCTCTGGTCGCTTTCTCGAAAGCGTCCTTCTCCTCCTCCCTCT
GACGGTCCTTCCTCCGTCTGCCTGTGCCTTCCCGGGCCTGGAGGATTGCA
CCAGTGAATCCAATCCCTCTTTCACCATTGTGACCTGCGATCGTTTTGGC
ATAGATCCTGTCGCGGGACGGCCGAAGCGCTGTTTGTCTGCTGAAAACTG
CATCAGTTCCACGAGTGTGAATAATCCCAGCAAATACATGTCCCCTTGGG
TCTTCAATGGGGCTGGTGAAGACGTGCCTACCGCATGGTTGTCCCTCGTC
CGTGCAGTGGAAGCCCAGGAAGGATTGAAGGTTGTGGAAATCGACAACGG
AAGCAAGCAATACTATCTCCGGGCGGAAGCGCCGAGCAAAGTACCCCCCG
GCGGAGTGGACGACTTGGAATTCCTCTTATCGCCGAAAGATGGCTTGGTG
TTCTTCCGCTCCGCCTCACGACAAATGGCCTTCCTCTACCCGTTGACCCA
GCCCGTGGGCGATGGAGGGAGCATCAAGAAGAGGCTGGAAACGATCCAGA
AGGCCGTGGGCTGGTCGACTGTTGAGGAGTTTTACGACTACAAGTAATTC
TTGCGGCAAGGCAAGCGCCTGGTTAGCGGTTGGTTAGCGGTGGTGATCAC
TTGTATATGTACTGAATAAATTTTTATGCCGGCAAGGCATCGATTCTTGG
AAAAAAAGGCTGGGCTGGGTGGCATGTACAGAAGCATAGAAAGCAGAAAA
AACAACCATCATCTACGCGCCA

protein sequence of rna2749

>rna2749-protein ID=rna2749-protein|Name=rna2749|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNL
PIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKL
LSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTL
APIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLID
VLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKV
GGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAA
RPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKP
APAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSA
KAPAASGKGSLANIAKKVAKK

mRNA from alignment at CM002459.1:1113818..1116046+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2749 ID=rna2749|Name=rna2749|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp|location=Sequence derived from alignment at CM002459.1:1113818..1116046+ (Nannochloropsis gaditana)
TCTCGCAGCAAATAAGCGACTACTGGCTTGGCCCCTCTGACAAGTCATAC
CTGGAAATTTGATCTTCTTTTACTTCACCGCAATGGCTATAATGGCATTA
ATAATGAAAGTCATCGTTGCCTGACCTACGTCGCATTGTAAATCGCGCAT
GGTGGACCAGGGTTTTGTCTCTATTGTGTCATGACGGGATTGGACCGACC
CAAGACCACTCATCCGAATCAGAAGAGGTTTCGATTGACCATGTTCCGCT
TCCCCTTTGAACTCTACACATAGACCGCggttctccccttcttcccagtC
GTTTCACACCATGAAGACCTTCGCCGTGCTCACCCTAGTGTCCCTTGCTA
TGTCGCAAGCCTTTCTGGCTCCTACTCCTGCAGCTTTCGGGTCTAGCAGA
TCGGGCGTGCGATCCATGGCGACTGGTGCCCGTAGCATGAAAATGGAGAA
TTTCAACCTCCCTATTGGAGAGGACCAGGCGGAAAATGTTCCCTCCACCA
TTTTGGGAGAGGCCAATTACCGGAAGTTTGTCGCGTCCTACAAGCCCGAT
GGCATGATCGTCGGCGGGGCGCGCTACCCTTTGTTCAGGCGAGTCTCGGA
GCTTAAGCTGCTGTCTTTGACCGCGGAGACAGGTTTATTGTCTCGATTGG
AAGAGCTTGGTCTCAGACTGAGTGACCTGGAGAAGTTGCTGcctttggtg
gaggagctagAGCTGTTATCCTTGGCGGAGAAGAACCAAGAACTCATCCT
GCAGACATTGGCGCCCATTGCTATCGAGCAAGCACCAGCACTCCTACCCA
TCCTCACTGGAGTGCTTCGCACGCCTCCCGCTACCTTTTTTGCGGTTGCC
GCCGCAGCTTTGGCGGCTGAAGCCGGGGTTGTGCTGGTCAGTGGGAACCC
CCTTATCGATGTCTTGGCGGGGATTCCTCTGGTGGGCTTGGCGGCTGTAT
CGGCCGCAACAGGcaccatcctttcctctggcgtccccatcccttccgcc
GCACCGAGGAGGATCTCGTCTAGCGGTGGAGGCGCAGACGTGACGCCCGC
TTTCAAGGTCGGCGGGGGCAAGAAAGGCAGAGTTAAGGCGGCTAAGGTTG
TGGCGTCCGCGGTAGGTTGCCCGACAGGCACTGTTTTCAACGTCTCATGC
CCTTCCGTACTCTTTTGGGACAGGTCGTGACACCCAGTCTATTTGCTGTC
TGGTCCCCTGTTGCGCCAGGTGCATCAcaccctcctttttctcaaCCATA
CCCTTTCGCTTGCACTTCAACCACAGCCTGTTGCTGTCGCCCCTCCCAAA
AAGTCGGCggctcccgtcgtcctcggcCCTCTCTCTGCCCCGGCCAGGGG
CGGGGCTCCCACAGCTCCTGCTGCCAGGCCCACCCCTTCTCTGAAGGCCA
AGCCTGCGGTAAAGCCCGCGGTGAAATCAGTCGCCAAACCCGCCGCTAAA
CCTGCCGTGAAGCTCGCCACTAAAGCTTCCGCGAAACCCGCAGCCAAGCC
CGCTGCCAAGCCCGCTGCCAAGCCTGCTCCCGCCGCGAAGAAACCTCTGG
GGATCAAAGCAGCACCCGCGCCCCAAAAGGTAGCGGCTGTGGCAGTCAAG
AAGGCTGCAACGGCTCCCGCGCCGGCACCAAAAGCAGTCCCTGCAGCAGC
TAAGGcgtctcccctcctgtctgcCAAGGCCCCCGCGGCGTCCGGCAAAG
GTAGTTTGGCGAATATTGCCAAGAAGGTCGCCAAGAAGTAAGCTTTCCTT
TGAGACGTgaccaggaaaaggaaaatgaCAAAAACCCATGTGAAGAAATT
gtggagggaatgaaggaTCGATGGTGGCAGTGCCTGTTCACTCACAGCCT
GAAGTCCTTGAAGTCTGATGGAAATTGGTTTGACTGCATTCGTCTTCTTA
TGGATCAGATGTCTGGAACGCAGAAAGAATGAAGGGTAAGGACTGAAGAG
CCGTGAGGATGTTTGTCATGTCTGCGTGGCCTCGTGGATTGTGGGCAGGT
TTGGGAAGGATGGGATTTTTTTGTATGTGGTATCTGTCTGGTGGTTTCAT
ATGAATCTGGCGCGGGTTAATTACTTTCCTTAGCGTGTATGGAGCGGAAG
TGtaaggggagaagacgataGGTACAAGAAAACGCGGGTTTTTTCTTCGG
TTAATATATTCCATGCAGCACAGCCTTGCAGCTGAGTATGGATGACATGA
AAACAGACCGTACTTTGACAAGCTTCCTC

Coding sequence (CDS) from alignment at CM002459.1:1113818..1116046+

>rna2749 ID=rna2749|Name=rna2749|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002459.1:1113818..1116046+ (Nannochloropsis gaditana)
ATGAAGACCTTCGCCGTGCTCACCCTAGTGTCCCTTGCTATGTCGCAAGC
CTTTCTGGCTCCTACTCCTGCAGCTTTCGGGTCTAGCAGATCGGGCGTGC
GATCCATGGCGACTGGTGCCCGTAGCATGAAAATGGAGAATTTCAACCTC
CCTATTGGAGAGGACCAGGCGGAAAATGTTCCCTCCACCATTTTGGGAGA
GGCCAATTACCGGAAGTTTGTCGCGTCCTACAAGCCCGATGGCATGATCG
TCGGCGGGGCGCGCTACCCTTTGTTCAGGCGAGTCTCGGAGCTTAAGCTG
CTGTCTTTGACCGCGGAGACAGGTTTATTGTCTCGATTGGAAGAGCTTGG
TCTCAGACTGAGTGACCTGGAGAAGTTGCTGcctttggtggaggagctag
AGCTGTTATCCTTGGCGGAGAAGAACCAAGAACTCATCCTGCAGACATTG
GCGCCCATTGCTATCGAGCAAGCACCAGCACTCCTACCCATCCTCACTGG
AGTGCTTCGCACGCCTCCCGCTACCTTTTTTGCGGTTGCCGCCGCAGCTT
TGGCGGCTGAAGCCGGGGTTGTGCTGGTCAGTGGGAACCCCCTTATCGAT
GTCTTGGCGGGGATTCCTCTGGTGGGCTTGGCGGCTGTATCGGCCGCAAC
AGGcaccatcctttcctctggcgtccccatcccttccgccGCACCGAGGA
GGATCTCGTCTAGCGGTGGAGGCGCAGACGTGACGCCCGCTTTCAAGGTC
GGCGGGGGCAAGAAAGGCAGAGTTAAGGCGGCTAAGGTTGTGGCGTCCGC
GCCTGTTGCTGTCGCCCCTCCCAAAAAGTCGGCggctcccgtcgtcctcg
gcCCTCTCTCTGCCCCGGCCAGGGGCGGGGCTCCCACAGCTCCTGCTGCC
AGGCCCACCCCTTCTCTGAAGGCCAAGCCTGCGGTAAAGCCCGCGGTGAA
ATCAGTCGCCAAACCCGCCGCTAAACCTGCCGTGAAGCTCGCCACTAAAG
CTTCCGCGAAACCCGCAGCCAAGCCCGCTGCCAAGCCCGCTGCCAAGCCT
GCTCCCGCCGCGAAGAAACCTCTGGGGATCAAAGCAGCACCCGCGCCCCA
AAAGGTAGCGGCTGTGGCAGTCAAGAAGGCTGCAACGGCTCCCGCGCCGG
CACCAAAAGCAGTCCCTGCAGCAGCTAAGGcgtctcccctcctgtctgcC
AAGGCCCCCGCGGCGTCCGGCAAAGGTAGTTTGGCGAATATTGCCAAGAA
GGTCGCCAAGAAGTAAATGAAGACCTTCGCCGTGCTCACCCTAGTGTCCC
TTGCTATGTCGCAAGCCTTTCTGGCTCCTACTCCTGCAGCTTTCGGGTCT
AGCAGATCGGGCGTGCGATCCATGGCGACTGGTGCCCGTAGCATGAAAAT
GGAGAATTTCAACCTCCCTATTGGAGAGGACCAGGCGGAAAATGTTCCCT
CCACCATTTTGGGAGAGGCCAATTACCGGAAGTTTGTCGCGTCCTACAAG
CCCGATGGCATGATCGTCGGCGGGGCGCGCTACCCTTTGTTCAGGCGAGT
CTCGGAGCTTAAGCTGCTGTCTTTGACCGCGGAGACAGGTTTATTGTCTC
GATTGGAAGAGCTTGGTCTCAGACTGAGTGACCTGGAGAAGTTGCTGcct
ttggtggaggagctagAGCTGTTATCCTTGGCGGAGAAGAACCAAGAACT
CATCCTGCAGACATTGGCGCCCATTGCTATCGAGCAAGCACCAGCACTCC
TACCCATCCTCACTGGAGTGCTTCGCACGCCTCCCGCTACCTTTTTTGCG
GTTGCCGCCGCAGCTTTGGCGGCTGAAGCCGGGGTTGTGCTGGTCAGTGG
GAACCCCCTTATCGATGTCTTGGCGGGGATTCCTCTGGTGGGCTTGGCGG
CTGTATCGGCCGCAACAGGcaccatcctttcctctggcgtccccatccct
tccgccGCACCGAGGAGGATCTCGTCTAGCGGTGGAGGCGCAGACGTGAC
GCCCGCTTTCAAGGTCGGCGGGGGCAAGAAAGGCAGAGTTAAGGCGGCTA
AGGTTGTGGCGTCCGCGCCTGTTGCTGTCGCCCCTCCCAAAAAGTCGGCg
gctcccgtcgtcctcggcCCTCTCTCTGCCCCGGCCAGGGGCGGGGCTCC
CACAGCTCCTGCTGCCAGGCCCACCCCTTCTCTGAAGGCCAAGCCTGCGG
TAAAGCCCGCGGTGAAATCAGTCGCCAAACCCGCCGCTAAACCTGCCGTG
AAGCTCGCCACTAAAGCTTCCGCGAAACCCGCAGCCAAGCCCGCTGCCAA
GCCCGCTGCCAAGCCTGCTCCCGCCGCGAAGAAACCTCTGGGGATCAAAG
CAGCACCCGCGCCCCAAAAGGTAGCGGCTGTGGCAGTCAAGAAGGCTGCA
ACGGCTCCCGCGCCGGCACCAAAAGCAGTCCCTGCAGCAGCTAAGGcgtc
tcccctcctgtctgcCAAGGCCCCCGCGGCGTCCGGCAAAGGTAGTTTGG
CGAATATTGCCAAGAAGGTCGCCAAGAAGTAA

Synonyms

Publications