EWM27972.1, cds2741 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|553193120|ref|XP_005855712.1| (hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526] >gi|422293334|gb|EKU20634.1| hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526] >gi|585110313|gb|EWM27972.1| Protein of unknown function DUF1118 [Nannochloropsis gaditana]) HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0
Query: 1 MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKVGGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAKAPAASGKGSLANIAKKVAKK 421
MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKVGGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAKAPAASGKGSLANIAKKVAKK
Sbjct: 1 MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKVGGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAKAPAASGKGSLANIAKKVAKK 421
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|223993577|ref|XP_002286472.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977787|gb|EED96113.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 126.716 bits (317), Expect = 1.966e-30 Identity = 83/195 (42.56%), Postives = 113/195 (57.95%), Query Frame = 0
Query: 45 MENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMI---------VGGA------RYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGN--PLIDV----LAGIPLVGLAAVSAATG 218
ENF EDQAEN P++ILGEANY+K+V S P+ M+ +G YP+ RV EL LL TAE G+LS+LE GL L E+LLP +E+L +L L NQ+L++ +APIAIE AP LLP++ G + PA F+ +AAA A + SG P + + +AG+ L+ L+ VSA G
Sbjct: 36 YENFGFDFAEDQAENTPTSILGEANYKKWVNSVDPNNMLNRQSVLAVALGWEGTDEEDTYPVLSRVRELGLLEKTAELGVLSKLEAQGLTLEKAEELLPALEKLGVLKLVANNQQLLINGVAPIAIEGAPLLLPLVAGAIEVGPAAFY-LAAATFAGLDFYLFSSGAEVPFLGLSAGGVAGLVLIPLSVVSAIVG 229
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|1210517461|dbj|GAX23718.1| (hypothetical protein FisN_12Hh295 [Fistulifera solaris]) HSP 1 Score: 106.686 bits (265), Expect = 2.999e-23 Identity = 87/217 (40.09%), Postives = 124/217 (57.14%), Query Frame = 0
Query: 14 MSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGN---PLIDVLAGIP----LVGLAAVSAATGTILSS 223
M + FL A+ S+ + RS + + E+F ED +N P + GEANY+++V + M+ +Y + RRV EL LL TA+ GLLS+LEE GL L +EKLLPL+EEL LL LA NQ+L++ AP+ +E AP L+P+L G + P F+ +AAAL +A L+S N P + + AG+ LV L AV A G+ L+S
Sbjct: 1 MMKLFLLAVVASLASAYAPARSFVSRPSTRLHESFGFDFAEDTYKNQPIQLGGEANYKQWVNKISDNSML--NRKYNVIRRVRELDLLKATADNGLLSKLEEQGLDLVTIEKLLPLIEELGLLELAGSNQQLLVNLAAPLLVEPAPFLIPLLAGAIAAGPVAFYGASAAALGLDA--YLLSTNAELPFVGLSAGVTLGLVLVPLGAVLAVVGSALAS 213
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|1210526091|dbj|GAX15009.1| (hypothetical protein FisN_12Lh295 [Fistulifera solaris]) HSP 1 Score: 103.99 bits (258), Expect = 2.854e-22 Identity = 85/217 (39.17%), Postives = 122/217 (56.22%), Query Frame = 0
Query: 14 MSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGN---PLIDVLAGIP----LVGLAAVSAATGTILSS 223
M + F+ A+ S+ + RS T + E+F ED +N P + GEANY+++V + M+ +Y + RRV EL LL TA+ GLLS+LEE GL L +EKLLPL+EEL LL LA NQ+L++ AP+ +E AP L+P+L G + P F+ + A L +A L+S N P + + AG+ LV L AV A G+ L+S
Sbjct: 1 MMKLFVLAVVASLASAYAPARSFVTRPSTRLHESFGFDFAEDTYKNQPIQLGGEANYKQWVNKISDNSML--NRKYNVIRRVRELDLLKATADNGLLSKLEEQGLDLVTIEKLLPLIEELGLLELAGSNQQLLVNLAAPLLVEPAPFLIPLLAGAIAAGPVAFYGASVAVLGLDA--YLLSTNAELPFVGLSAGVTLGLVLVPLGAVLAVVGSALAS 213
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|1072230964|gb|OEU15697.1| (hypothetical protein FRACYDRAFT_269460 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 104.375 bits (259), Expect = 2.863e-22 Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 0
Query: 7 LTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPP 173
L LV LA++ A AF S S V+ + + + E+F E EN P + GE Y++++ K D M+ +Y RV EL+LL T + GLLS+LE+ GL L +E+LLPL+E+ LLS+A NQ+LI+ AP+ IE AP LLP++ G L P
Sbjct: 4 LKLVFLAIT----ASVAVAFTPSTSRVQKVTSSTQLY--EDFGFDFAEQTYENQPDLLKGEQEYKQYMNIVKEDNML--NKKYNAIGRVRELELLQATIDNGLLSKLEKNGLDLKTIEQLLPLLEQYGLLSVAANNQQLIVNLAAPLLIEGAPILLPVVAGALDIGP 162
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|219121940|ref|XP_002181314.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407300|gb|EEC47237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 99.7525 bits (247), Expect = 1.117e-20 Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 0
Query: 35 SMATGAR-SMKM-ENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILT 166
S GAR S K+ ENF L +GED +N + GEANY+++V + + + +Y + RRV EL LL TA+ G+LS+LE GL L +E++LP +E+ LSL NQ+L++ LAP+ IE AP LLP+++
Sbjct: 23 SRTFGARPSTKLYENFGLGVGEDTYKNQVEQLGGEANYKQWVNKVQDNSFL--NRKYNVVRRVRELDLLGKTADQGILSKLEAQGLSLEKIEQILPALEKAGALSLVGNNQQLLVNGLAPVVIEGAPILLPLVS 154
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|873236809|emb|CEL98385.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 100.523 bits (249), Expect = 1.201e-19 Identity = 84/195 (43.08%), Postives = 109/195 (55.90%), Query Frame = 0
Query: 34 RSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGAR----YPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALA-AEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSS 223
RS+ ++MENF +G DQAE V E RK++ K D + A YPL R+ +LKLLS AE+GLL LEE GL LS +EK LP+ E LLSLA N I TL P+ +E APALLPI T ++ P + + AV AL AE GV L + +DV+A +PL+G AA S G+ L +
Sbjct: 48 RSVQVRRGDLRMENFFGQVGLDQAE-VAGVASSETLLRKYLREEKKDIVPPTAAELRDEYPLLDRLRDLKLLSALAESGLLRALEEKGLTLSQVEKALPVAERFGLLSLAANNLPTIKNTLLPLLVEPAPALLPIATAAVKAPTSLYTAVIPLALTGAEVGVHLGFNSIPLDVVAALPLLGGAAASFTVGSFLEA 241
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|676398913|ref|XP_009042734.1| (hypothetical protein AURANDRAFT_68759, partial [Aureococcus anophagefferens] >gi|323446390|gb|EGB02568.1| hypothetical protein AURANDRAFT_68759, partial [Aureococcus anophagefferens]) HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-14 Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 0
Query: 46 ENFNLPIGEDQAENVPSTILGEANYR-KFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPIL 165
E+F EDQA N P ILGE + ++V SYKP ++ G YPLF+ + + K+LS TAE+GLL L++LGL LSD+EKLLP+V++ L LA+ N L + + IE AP L+P+L
Sbjct: 32 ESFGFDFVEDQAANTPFEILGERRLKTEWVRSYKPTATVIEGKPYPLFQELQDKKILSATAESGLLGALDDLGLTLSDVEKLLPIVDKSGALGLAKNNLPLAIVATGYLLIEPAPVLIPVL 152 The following BLAST results are available for this feature:
BLAST of EWM27972.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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