EWM27972.1, cds2741 (CDS) Nannochloropsis gaditana

Overview
NameEWM27972.1
Unique Namecds2741
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1114128..1114928 +
Alignment locationCM002459.1:1115094..1115558 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27972.1
ProductProtein of unknown function DUF1118
Orig transcript idgnl|cribi|Naga_100008g127.7864.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1114128..1114928 +
CM002459.1supercontigCM002459.1:1115094..1115558 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009500DUF1118
Homology
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|553193120|ref|XP_005855712.1| (hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526] >gi|422293334|gb|EKU20634.1| hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526] >gi|585110313|gb|EWM27972.1| Protein of unknown function DUF1118 [Nannochloropsis gaditana])

HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0
Query:    1 MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKVGGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAKAPAASGKGSLANIAKKVAKK 421
            MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKVGGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAKAPAASGKGSLANIAKKVAKK
Sbjct:    1 MKTFAVLTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRISSSGGGADVTPAFKVGGGKKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKASAKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAKAPAASGKGSLANIAKKVAKK 421          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|223993577|ref|XP_002286472.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977787|gb|EED96113.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 126.716 bits (317), Expect = 1.966e-30
Identity = 83/195 (42.56%), Postives = 113/195 (57.95%), Query Frame = 0
Query:   45 MENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMI---------VGGA------RYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGN--PLIDV----LAGIPLVGLAAVSAATG 218
             ENF     EDQAEN P++ILGEANY+K+V S  P+ M+         +G         YP+  RV EL LL  TAE G+LS+LE  GL L   E+LLP +E+L +L L   NQ+L++  +APIAIE AP LLP++ G +   PA F+ +AAA  A     +  SG   P + +    +AG+ L+ L+ VSA  G
Sbjct:   36 YENFGFDFAEDQAENTPTSILGEANYKKWVNSVDPNNMLNRQSVLAVALGWEGTDEEDTYPVLSRVRELGLLEKTAELGVLSKLEAQGLTLEKAEELLPALEKLGVLKLVANNQQLLINGVAPIAIEGAPLLLPLVAGAIEVGPAAFY-LAAATFAGLDFYLFSSGAEVPFLGLSAGGVAGLVLIPLSVVSAIVG 229          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|1210517461|dbj|GAX23718.1| (hypothetical protein FisN_12Hh295 [Fistulifera solaris])

HSP 1 Score: 106.686 bits (265), Expect = 2.999e-23
Identity = 87/217 (40.09%), Postives = 124/217 (57.14%), Query Frame = 0
Query:   14 MSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGN---PLIDVLAGIP----LVGLAAVSAATGTILSS 223
            M + FL    A+  S+ +  RS  +   +   E+F     ED  +N P  + GEANY+++V     + M+    +Y + RRV EL LL  TA+ GLLS+LEE GL L  +EKLLPL+EEL LL LA  NQ+L++   AP+ +E AP L+P+L G +   P  F+  +AAAL  +A   L+S N   P + + AG+     LV L AV A  G+ L+S
Sbjct:    1 MMKLFLLAVVASLASAYAPARSFVSRPSTRLHESFGFDFAEDTYKNQPIQLGGEANYKQWVNKISDNSML--NRKYNVIRRVRELDLLKATADNGLLSKLEEQGLDLVTIEKLLPLIEELGLLELAGSNQQLLVNLAAPLLVEPAPFLIPLLAGAIAAGPVAFYGASAAALGLDA--YLLSTNAELPFVGLSAGVTLGLVLVPLGAVLAVVGSALAS 213          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|1210526091|dbj|GAX15009.1| (hypothetical protein FisN_12Lh295 [Fistulifera solaris])

HSP 1 Score: 103.99 bits (258), Expect = 2.854e-22
Identity = 85/217 (39.17%), Postives = 122/217 (56.22%), Query Frame = 0
Query:   14 MSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGN---PLIDVLAGIP----LVGLAAVSAATGTILSS 223
            M + F+    A+  S+ +  RS  T   +   E+F     ED  +N P  + GEANY+++V     + M+    +Y + RRV EL LL  TA+ GLLS+LEE GL L  +EKLLPL+EEL LL LA  NQ+L++   AP+ +E AP L+P+L G +   P  F+  + A L  +A   L+S N   P + + AG+     LV L AV A  G+ L+S
Sbjct:    1 MMKLFVLAVVASLASAYAPARSFVTRPSTRLHESFGFDFAEDTYKNQPIQLGGEANYKQWVNKISDNSML--NRKYNVIRRVRELDLLKATADNGLLSKLEEQGLDLVTIEKLLPLIEELGLLELAGSNQQLLVNLAAPLLVEPAPFLIPLLAGAIAAGPVAFYGASVAVLGLDA--YLLSTNAELPFVGLSAGVTLGLVLVPLGAVLAVVGSALAS 213          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|1072230964|gb|OEU15697.1| (hypothetical protein FRACYDRAFT_269460 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 104.375 bits (259), Expect = 2.863e-22
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 0
Query:    7 LTLVSLAMSQAFLAPTPAAFGSSRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPP 173
            L LV LA++    A    AF  S S V+ + +  +    E+F     E   EN P  + GE  Y++++   K D M+    +Y    RV EL+LL  T + GLLS+LE+ GL L  +E+LLPL+E+  LLS+A  NQ+LI+   AP+ IE AP LLP++ G L   P
Sbjct:    4 LKLVFLAIT----ASVAVAFTPSTSRVQKVTSSTQLY--EDFGFDFAEQTYENQPDLLKGEQEYKQYMNIVKEDNML--NKKYNAIGRVRELELLQATIDNGLLSKLEKNGLDLKTIEQLLPLLEQYGLLSVAANNQQLIVNLAAPLLIEGAPILLPVVAGALDIGP 162          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|219121940|ref|XP_002181314.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407300|gb|EEC47237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.7525 bits (247), Expect = 1.117e-20
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 0
Query:   35 SMATGAR-SMKM-ENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILT 166
            S   GAR S K+ ENF L +GED  +N    + GEANY+++V   + +  +    +Y + RRV EL LL  TA+ G+LS+LE  GL L  +E++LP +E+   LSL   NQ+L++  LAP+ IE AP LLP+++
Sbjct:   23 SRTFGARPSTKLYENFGLGVGEDTYKNQVEQLGGEANYKQWVNKVQDNSFL--NRKYNVVRRVRELDLLGKTADQGILSKLEAQGLSLEKIEQILPALEKAGALSLVGNNQQLLVNGLAPVVIEGAPILLPLVS 154          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|873236809|emb|CEL98385.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 100.523 bits (249), Expect = 1.201e-19
Identity = 84/195 (43.08%), Postives = 109/195 (55.90%), Query Frame = 0
Query:   34 RSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGAR----YPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALA-AEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSS 223
            RS+      ++MENF   +G DQAE V      E   RK++   K D +    A     YPL  R+ +LKLLS  AE+GLL  LEE GL LS +EK LP+ E   LLSLA  N   I  TL P+ +E APALLPI T  ++ P + + AV   AL  AE GV L   +  +DV+A +PL+G AA S   G+ L +
Sbjct:   48 RSVQVRRGDLRMENFFGQVGLDQAE-VAGVASSETLLRKYLREEKKDIVPPTAAELRDEYPLLDRLRDLKLLSALAESGLLRALEEKGLTLSQVEKALPVAERFGLLSLAANNLPTIKNTLLPLLVEPAPALLPIATAAVKAPTSLYTAVIPLALTGAEVGVHLGFNSIPLDVVAALPLLGGAAASFTVGSFLEA 241          
BLAST of EWM27972.1 vs. NCBI_GenBank
Match: gi|676398913|ref|XP_009042734.1| (hypothetical protein AURANDRAFT_68759, partial [Aureococcus anophagefferens] >gi|323446390|gb|EGB02568.1| hypothetical protein AURANDRAFT_68759, partial [Aureococcus anophagefferens])

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-14
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 0
Query:   46 ENFNLPIGEDQAENVPSTILGEANYR-KFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPIL 165
            E+F     EDQA N P  ILGE   + ++V SYKP   ++ G  YPLF+ + + K+LS TAE+GLL  L++LGL LSD+EKLLP+V++   L LA+ N  L +     + IE AP L+P+L
Sbjct:   32 ESFGFDFVEDQAANTPFEILGERRLKTEWVRSYKPTATVIEGKPYPLFQELQDKKILSATAESGLLGALDDLGLTLSDVEKLLPIVDKSGALGLAKNNLPLAIVATGYLLIEPAPVLIPVL 152          
The following BLAST results are available for this feature:
BLAST of EWM27972.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|553193120|ref|XP_005855712.1|0.000e+0100.00hypothetical protein NGA_0605600 [Nannochloropsis ... [more]
gi|223993577|ref|XP_002286472.1|1.966e-3042.56predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210517461|dbj|GAX23718.1|2.999e-2340.09hypothetical protein FisN_12Hh295 [Fistulifera sol... [more]
gi|1210526091|dbj|GAX15009.1|2.854e-2239.17hypothetical protein FisN_12Lh295 [Fistulifera sol... [more]
gi|1072230964|gb|OEU15697.1|2.863e-2239.52hypothetical protein FRACYDRAFT_269460 [Fragilario... [more]
gi|219121940|ref|XP_002181314.1|1.117e-2043.28predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|873236809|emb|CEL98385.1|1.201e-1943.08unnamed protein product [Vitrella brassicaformis C... [more]
gi|676398913|ref|XP_009042734.1|1.824e-1446.28hypothetical protein AURANDRAFT_68759, partial [Au... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2749rna2749Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications