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Properties
| Property Name | Value |
|---|
| Product | 50s ribosomal protein l3-2 |
| Orig transcript id | gnl|cribi|Naga_100008g125.7849.mrna |
| Orig protein id | gnl|cribi|Naga_100008g125.7849 |
| Gene | Rpl3 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:1111167..1112409 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2747 ID=rna2747|Name=rna2747|organism=Nannochloropsis gaditana|type=mRNA|length=2340bp
GCGATAAAAAAACAGCATGTCTCGCAGGTACAATGTTTGATCCTACAGCG
ACGCCTGAAGTACAATTCCTAGGCCTCATTTTAACGAGGCTGAGAGTTTA
AAGCCTTTTCATGGCCATTGCGCACGAGCCAAAGGACATGGCGGGAGTGC
ACGATGGACAATGCCACCAACATGATCCGCTTTTTCTACTTTGTGGGGGA
TGGGGACGTGGGAGGTGTCTGATCATATAGATCAAAATACCACGCAAGGG
CGTCGACACATCTCTGCGCAACGTTCCTGTGTCAGGAAGACACGAAAAAA
CTTGGCATTCATGGCCAAGATCGCATGCGAAGGCAGAAATGAGGAAGGAT
CCGGTGTGCCATTTTTCCTGTGTGTGGTGTCCTTCAAGTTATCTGCTTGC
ACTTAGGTCACGCTCTCAGCCCCGCTCAGCCCGTCAAAAATGCGCCGCAC
ACAGACACATGTCAAGTCAACCTGTGTGCCATGCCTCACAACACCACACA
AATCACACAGGATCTGGTGCTACCAAAGGGAGAAGCTGATCATTGGCGTG
CTGCATTAGGAGTGCTGGCATCCTCCACTTCACTATGGTGTCTGCGCTAC
CCAGCGTCAAAGTCTTAGTTACCGGTGGCGGCGGGTTTTTAGGCAGATAC
TTGTGTCAGGTATTACTACGAAGAAAACGACTCAATGGTCGGGCCCTGGA
TAGCATCGCCATTCTTGACACAGGCGCGGATACTCATGTGCCCTGTGATA
CAAAAGTCCAAGTCTTCCCGCATGGACCTACCAACCAAGCATCTTCCGCC
ATCAGAGTGGAGAACTTCAGAGGGGACATAACAGACCGCAAGCTGGTGGA
GAAAGCCATGCAGCCGGGGTCGGAGGGGGGCCACGTCACAATATTCCACC
TGGCCTCGGTGATGAGCGGGGAGGGCGAGGAGGAGTTTGATAAATGTGTA
GCCGTCAACCTGGATGGCACGCAAAACCTGTTAGAGAAAGCCCGTGCCCT
ACACGCCAGCGGTCGAGTAGGGGAGAAGCCTGTCCGCTTCGTCTTCCCTT
CCTCTTTCGCTGCCTTTGGGCCGCACCCGGAGGTGAGTGACGAGACGAAA
CTCACCCCGCAAAGTACCTACGGGATGACGAAGGCAGTGGGGGAGCTTAT
GGTCAACGACTACACGCGGAAAGGGTGGGTAGACGGCCGCACGGGTCGGT
TGCCGACGGTGATCGTTCGGCCGGGGAACAAGAATGGGGCGTCGACGGGA
TGTTTCTCGGCAGTGGTTCGGGAGCTCTTGATGGGCCACGACTACGTGAT
TCCCTATGACCCCCGCCAGACCCACCCCGTGATCAGCACCCGGCGCACGA
TCAAGGGGCTCCTGGCCTTGGCCGAGGTGGAGGGGGAGTCCTTGGGGGGG
GATCGAAGCGTGAACCTCCCGGCGTTGCAAACCACGATGGAGGAGCTCTT
GTTCCACACCCGGCAAATCGCCCAGGGGCGTGGGATCCCCATGGGGGAGG
TGTCTGTCAAGATCGATCCGTGGGTCAGTGGGATAGTGGGCAGGTTCCCG
CAGGTCATGCGAAGTCCACGCGCAGAAACCTTGGGTCTTCCAAGAGACGG
GAGCGTGGAGGCCGTCATCGAAGACTATGTGGACGAGTTTTTGGACGACG
AGATGAAGGACGATTACCCTCTCTTCTCGATCTAAGAAGGCGAAATTCAG
GTCGGTGTACCGGGTGTGAATGGGAAAGAATCTGTGCGAACGGCGGGGAT
TCAAGCTAAGCTTCCGGCAAGTGTGCATTTGTACATCTTAGGAAGAATTA
GGTTCGGAGGGAGGAGCATACGAGTAAGGCCGATTGATACGAGATTCTAG
TAGGAGGAGCAGATTCTCGATTCCCTGCCGATGCGACGATAAAAACGTTC
AATTCGGTGAGGACCGCAAGAAGTGGCGAGGAAAGCGCTGTGCGTACGAC
GCAATTCGAATGCCGGTAATCCATGCGCGGAAGCGAATCAGAATCCTACA
AGGGACCTTGTAGAAAGCTTTATGGCACATCAAGTAATTGCTGATAATGA
AAACAAGAACACGATTTTTATGTATACCAACTATACCTCAAGCTTTCGCA
AGGATTCATGCCAAAGCGATAAGATTCTGGCTCACGGTTATCATGAGAAT
GAGATCGTTGGTTTGCCTTCCGAATGGAAACATAAGCGATGTGATGAATT
TCAGCTTTATGGCGTTCTTAATCATAGGCACCGAAGCAAGGATGGTTTCC
TCTCTCACTTTTACGCGAGCTATAAGCGATGAAGCCAGAGTCAGGATGGA
AGAGCGCTGATGAGATATCAAGAATTTGTTGGGAGCGGCC back to topprotein sequence of rna2747 >rna2747-protein ID=rna2747-protein|Name=rna2747|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MRRLLCAGGSVAGRRTSGAGNASLTLFGKPTSLPLTQATPSASLSTATRL
MDRINFEPQKSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRY
ACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWI
DGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKG
FQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGG
ERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPP
VPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE back to topmRNA from alignment at CM002459.1:1111167..1112409+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2747 ID=rna2747|Name=rna2747|organism=Nannochloropsis gaditana|type=mRNA|length=1243bp|location=Sequence derived from alignment at CM002459.1:1111167..1112409+ (Nannochloropsis gaditana)
ACCCGAAAGCCTCTTACAGTCGAGTGTTGCTCACCTTTTTCATCCTTTTG
CACCTTGCAGGAGCTGCAGGGTGGTAAGGAACGGATTGCAAAGATTGGAA
CGGTCTCTACGGATGAGGCGTTTGCTGTGTGCCGGGGGAAGCGTGGCCGG
GAGAAGAACTAGCGGTGCTGGAAATGCGTCCTTGACTCTGTTCGGTAAAC
CGACATCTTTACCACTCACGCAAGCGACACCATCAGCATCCCTTTCAACC
GCCACACGGTTGATGGATCGGATAAATTTTGAGCCTCAGAAATCCGGATT
GGACAGTAAAGCACGTCGGGATAAAAGCACTCCACCACCGACCCGCCGGT
CAGGCGCCATCGCATTGAAAGTCGGAATGCTCGGCGTCTATGACCAATGG
GGCCGACGGTACGCATGTACAGTTCTTCAGCTTGACGCCGTTCAGGTAGT
GCAAGTGAAAAAGGAGGCGACGGATGGATACACTTCGGTGCAACTCGGGG
CgggagaaaagaagctgAAGAACGCCTCTCGACCTGAACGAGGCCATTTG
GACCGTTGGATTGATGGACACGGCACCGCAGCACCCAAACGAAAACTCTG
GGAATTTAGAGTGACGCCAGATGCGCTCATGGCCCCAGGCACCCCGGTGT
TAGCCCAGCATTTCGTGCCTGGCCAGCTGGTGGATGTGGTCGGGACAAGC
AAAGGCAAGGGTTTCCAGGGCGTCATGAAACGATGGAATTTCAAAGGACA
AGGGGCATCCCACGGCGCGTCCCTTTCTCATCGATCCTTGGGCTCTACGG
GACAAAATACGTCCCCTGGCCGTGTCttcaaggggaaaaagatgCCGGGT
cgtcttggaggagagagggtgaCTGTGCAAAACCTCTGGCTGTATAAAAT
TGACACGGAGAGAAACCTCCTGTACGTGAAAGGGCACGTGCCAGGACCGA
AGGGAACCTACGTGCGAGTCAGCGATGCCATCAAAGGCGCCCATTTTCCT
GTGCCGCCCCCCGTACCCACGTTTGTGCCCGAGGCAGGCATCGCCTACCC
GGGGGAAATCACGGCGCAACTTCCAGAAGCGGATCCTTTGATACCgccag
aggggagggacgatgaATAAAGAGCCAGAAAGCAAGTGAAATTCAAAAAG
GAGGACCGTGTCGCCCGGAAGAGAGACGAACATGGCGCGTAGATGATGGT
TGTTTTTTCTGCTTTCTATGCTTCTGTACATGCCACCCAGCCC back to topCoding sequence (CDS) from alignment at CM002459.1:1111167..1112409+ >rna2747 ID=rna2747|Name=rna2747|organism=Nannochloropsis gaditana|type=CDS|length=1008bp|location=Sequence derived from alignment at CM002459.1:1111167..1112409+ (Nannochloropsis gaditana)
ATGAGGCGTTTGCTGTGTGCCGGGGGAAGCGTGGCCGGGAGAAGAACTAG
CGGTGCTGGAAATGCGTCCTTGACTCTGTTCGGTAAACCGACATCTTTAC
CACTCACGCAAGCGACACCATCAGCATCCCTTTCAACCGCCACACGGTTG
ATGGATCGGATAAATTTTGAGCCTCAGAAATCCGGATTGGACAGTAAAGC
ACGTCGGGATAAAAGCACTCCACCACCGACCCGCCGGTCAGGCGCCATCG
CATTGAAAGTCGGAATGCTCGGCGTCTATGACCAATGGGGCCGACGGTAC
GCATGTACAGTTCTTCAGCTTGACGCCGTTCAGGTAGTGCAAGTGAAAAA
GGAGGCGACGGATGGATACACTTCGGTGCAACTCGGGGCgggagaaaaga
agctgAAGAACGCCTCTCGACCTGAACGAGGCCATTTGGACCGTTGGATT
GATGGACACGGCACCGCAGCACCCAAACGAAAACTCTGGGAATTTAGAGT
GACGCCAGATGCGCTCATGGCCCCAGGCACCCCGGTGTTAGCCCAGCATT
TCGTGCCTGGCCAGCTGGTGGATGTGGTCGGGACAAGCAAAGGCAAGGGT
TTCCAGGGCGTCATGAAACGATGGAATTTCAAAGGACAAGGGGCATCCCA
CGGCGCGTCCCTTTCTCATCGATCCTTGGGCTCTACGGGACAAAATACGT
CCCCTGGCCGTGTCttcaaggggaaaaagatgCCGGGTcgtcttggagga
gagagggtgaCTGTGCAAAACCTCTGGCTGTATAAAATTGACACGGAGAG
AAACCTCCTGTACGTGAAAGGGCACGTGCCAGGACCGAAGGGAACCTACG
TGCGAGTCAGCGATGCCATCAAAGGCGCCCATTTTCCTGTGCCGCCCCCC
GTACCCACGTTTGTGCCCGAGGCAGGCATCGCCTACCCGGGGGAAATCAC
GGCGCAACTTCCAGAAGCGGATCCTTTGATACCgccagaggggagggacg
atgaATAA back to top
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