EWM27957.1, cds2739 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|585110298|gb|EWM27957.1| (50s ribosomal protein l3-2 [Nannochloropsis gaditana]) HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query: 1 MRRLLCAGGSVAGRRTSGAGNASLTLFGKPTSLPLTQATPSASLSTATRLMDRINFEPQKSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 335
MRRLLCAGGSVAGRRTSGAGNASLTLFGKPTSLPLTQATPSASLSTATRLMDRINFEPQKSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE
Sbjct: 1 MRRLLCAGGSVAGRRTSGAGNASLTLFGKPTSLPLTQATPSASLSTATRLMDRINFEPQKSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 335
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|553193144|ref|XP_005855719.1| (large subunit ribosomal protein L3 [Nannochloropsis gaditana CCMP526] >gi|422293341|gb|EKU20641.1| large subunit ribosomal protein L3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 509.22 bits (1310), Expect = 0.000e+0 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query: 89 MLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 335
MLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE
Sbjct: 1 MLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 247
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|299473316|emb|CBN77715.1| (Ribosomal protein L3 [Ectocarpus siliculosus]) HSP 1 Score: 280.796 bits (717), Expect = 3.369e-89 Identity = 142/234 (60.68%), Postives = 169/234 (72.22%), Query Frame = 0
Query: 75 PPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEA 308
P RRSGA+A+KVG + ++D WG R+ TVLQLD +VVQVK TDGYTS+QLG GE+K KN ++P+ R PKRKL EFRV+ +AL+ G + AQHFV GQ VDV GTSKGKGFQG MKRW FKGQ ASHG S + R +GSTGQ PGRVFKGKKMPGR+G +RVTVQNL + K+D R LL+V+GHVPG G +VRV+DAIKGA FP PP P+FV A
Sbjct: 113 PSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRR-----AGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKMDPVRELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFVAVA 341
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|669136986|ref|XP_008604061.1| (hypothetical protein SDRG_00366 [Saprolegnia diclina VS20] >gi|530744396|gb|EQC42638.1| hypothetical protein SDRG_00366 [Saprolegnia diclina VS20]) HSP 1 Score: 268.085 bits (684), Expect = 1.972e-85 Identity = 144/262 (54.96%), Postives = 178/262 (67.94%), Query Frame = 0
Query: 65 SKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHF-PVPPPVPTFVPEAGIAYPGEITAQLPEADP 325
S A K P ++R+G +A K+GM+ V+D WG +ACTVLQ++ QV QVK + T G+TS+Q+GAG +K KN ++P GHL + KR+L EFRVT DAL+ GT + A HF PGQ VDV GTSKGKGFQGVMKR NF GQ ASHG S + R +GS+GQ PG+V+KGKKMPGR+GG+RVT NLW++K+D ERNLLYVKG VPG G VRV+DA K PP PTF+ + G A PG I A E DP
Sbjct: 20 STALEAKPWTPESKRTGLLATKMGMISVFDDWGLSHACTVLQVEECQVTQVKDKETHGFTSLQIGAGLRKAKNVTKPVLGHLAK-----AGVPAKRELAEFRVTDDALIPAGTTLNALHFAPGQFVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLYVKGTVPGAPGGIVRVTDARKKKFSDDALPPFPTFIHD-GAALPGPIMAPKSEKDP 275
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|813198510|ref|XP_012208838.1| (hypothetical protein SPRG_14320 [Saprolegnia parasitica CBS 223.65] >gi|641526050|gb|KDO20448.1| hypothetical protein SPRG_14320 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 267.7 bits (683), Expect = 3.251e-85 Identity = 144/262 (54.96%), Postives = 178/262 (67.94%), Query Frame = 0
Query: 65 SKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHF-PVPPPVPTFVPEAGIAYPGEITAQLPEADP 325
S A K P ++R+G +A K+GM+ V+D WG +ACTVLQ++ QV QVK + T G+TS+Q+GAG +K KN ++P GHL + KR+L EFRVT DAL+ GT + A HF PGQ VDV GTSKGKGFQGVMKR NF GQ ASHG S + R +GS+GQ PG+V+KGKKMPGR+GG+RVT NLW++K+D ERNLLYVKG VPG G VRV+DA K PP PTF+ + G A PG I A E DP
Sbjct: 20 STALEAKPWTPESKRTGLLATKMGMISVFDDWGLSHACTVLQVEECQVTQVKDKETHGFTSLQIGAGLRKAKNVTKPVLGHLAK-----AGVPAKRELAEFRVTDDALIPAGTTLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLYVKGTVPGAPGGIVRVTDARKKKFTDDALPPFPTFIHD-GAALPGPIMAPKSEKDP 275
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|1173930423|gb|OQR83263.1| (50S ribosomal protein L3-2 [Achlya hypogyna]) HSP 1 Score: 266.929 bits (681), Expect = 6.375e-85 Identity = 144/262 (54.96%), Postives = 179/262 (68.32%), Query Frame = 0
Query: 65 SKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHF-PVPPPVPTFVPEAGIAYPGEITAQLPEADP 325
S A K P ++R+G +A+K+GM+ VYD WG +ACTVLQ++ QV QVK + G++S+QLGAG +K KN S+P GHL++ KR+L EFRV+ DAL+ GT + A HF PGQ VDV GTSKGKGFQGVMKR NF GQ ASHG S + R +GS+GQ PG+V+KGKKMPGR+GG+RVT NLW++KID ERNLLY+KG VPG G VRV+DA K PP PTF+P G + PG I A E DP
Sbjct: 26 STALEPKPWTPESKRTGLLAVKMGMISVYDDWGVSHACTVLQVEECQVTQVKDKEKHGFSSLQLGAGLRKAKNVSKPVLGHLNK-----AGVPAKRELHEFRVSDDALIPEGTTLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKIDPERNLLYLKGTVPGAPGGIVRVTDARKKKFADDALPPFPTFIP--GESLPGPIMAPKGEKDP 280
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|1173956291|gb|OQS03111.1| (50S ribosomal protein L3-2 [Thraustotheca clavata]) HSP 1 Score: 265.003 bits (676), Expect = 3.793e-84 Identity = 143/277 (51.62%), Postives = 184/277 (66.43%), Query Frame = 0
Query: 50 LMDRINFEPQKSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVP-PPVPTFVPEAGIAYPGEITAQLPEADP 325
L+ R+ P+ L S A K P ++R+G +A+K+GM+ VYD WG + CTVLQ++ QV Q+K + T G++++QLGAG +K KN ++P GHL + KR+L EFRV+ DAL+ GT + A HF PGQ VDV GTSKGKGFQGVMKR NF GQ ASHG S + R +GS+GQ PG+V+KGKKMPGR+GG+RVT NLW++K+D ERNLL+VKG VPG G VRV+DA K PP PTF+ G + PG I A E DP
Sbjct: 7 LVSRVLGAPR--ALSSLALEPKQWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAK-----AGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLFVKGTVPGAPGGIVRVTDARKKKFKDAAQPPFPTFILAEGESLPGPIMAPKSEKDP 276
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|325191529|emb|CCA25903.1| (50S ribosomal protein L32 putative [Albugo laibachii Nc14]) HSP 1 Score: 259.225 bits (661), Expect = 6.068e-82 Identity = 137/249 (55.02%), Postives = 170/249 (68.27%), Query Frame = 0
Query: 78 RRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPP-PVPTFVPEAGIAYPGEITAQLPEADP 325
+R+G +A+K+GM+ V+D +G + CTVLQ++ QV QVK G+ ++QLG G +K +N +P GHL++ PKR+L EFRV+ DAL+A GT + A HFVPGQ VDV GTSKGKGFQGVMK NF GQ ASHG S +HR +GSTGQ PGRVFKGKKMPGR+G +RVT NLW+ KIDT RNLLYVKG VPG KG+ VRV+DA K P P PTFV + + P E+ A DP
Sbjct: 37 KRTGLLAVKIGMISVWDYYGVAHGCTVLQVEKCQVTQVKTSDIHGFNALQLGVGLRKPRNVVKPLMGHLNK-----AGVPPKRQLQEFRVSEDALLAAGTTLTAMHFVPGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGRVFKGKKMPGRMGNKRVTRDNLWIVKIDTVRNLLYVKGSVPGTKGSIVRVTDARKKT--PTASLPFPTFVTQEEL--PAELVAPHGTTDP 276
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|595461021|gb|EXX63491.1| (hypothetical protein RirG_152090 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 258.455 bits (659), Expect = 3.488e-81 Identity = 147/286 (51.40%), Postives = 176/286 (61.54%), Query Frame = 0
Query: 55 NFEPQKSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVK---KEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIK---GAHFP---VPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEG 331
NF + L K R +++ +R GAIA K GM ++D+WG R+ T+LQLD VQVVQ+K K +VQ+G EKKLK +RP GH + PK+KL EF VTPDA++ GT + A HFVPGQ VDV S GKGF GVMKRWNF+G ASHG SL+HRS GSTGQN PG+VFKGKKM GRLGG TV NL + KID NL+YVKG VPG YVR+ DAIK FP +PPP PT PE P E+ A+ DP +P EG
Sbjct: 35 NFSSDSTTLSEKTRWTQNS----KRLGAIARKRGMSALWDEWGVRHPVTILQLDKVQVVQIKQNSKYVKPPLVAVQIGCTEKKLKGFTRPLLGHFRK-----AGVNPKKKLLEFHVTPDAVLPVGTEIKAAHFVPGQYVDVTAPSIGKGFAGVMKRWNFRGLPASHGTSLAHRSAGSTGQNQDPGKVFKGKKMAGRLGGNSATVLNLKVLKIDNILNLIYVKGGVPGFDDQYVRIRDAIKKPGKKCFPSDCIPPPFPTIDPEIVNYMPRELMAKTGGVDPFMPKEG 311
BLAST of EWM27957.1 vs. NCBI_GenBank
Match: gi|1214698263|gb|OWZ11325.1| (50S ribosomal protein L3 [Phytophthora megakarya]) HSP 1 Score: 256.144 bits (653), Expect = 1.064e-80 Identity = 135/248 (54.44%), Postives = 167/248 (67.34%), Query Frame = 0
Query: 78 RRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADP 325
+R+G +A+K+GM+ V+D +G R+ CTVLQ++ QV QVK E G+ ++QLG G +K KN S+P GHL + KR+L EFRV+ DAL+ GT + A HF GQ VDV GTSKGKGFQGVMK NF GQ ASHG S + R +GSTGQ PG+VFKGKKMPGR+GG RVT NLW+ KID ERNL+YVKG VPG G +R++DA K VP P PTFV G A P E+ A + DP
Sbjct: 40 KRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTEDRHGFNALQLGVGLRKPKNVSKPVLGHLAK-----AGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTQRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVERNLIYVKGSVPGNNGGIIRITDARKKKP-EVPLPYPTFVEAEGEALPSEVMAPHGDVDP 281 The following BLAST results are available for this feature:
BLAST of EWM27957.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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