rna2745, rna2745 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2745
Unique Name	rna2745
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2358
Alignment location	CM002459.1:1104466..1106454 -

Link to JBrowse

Properties


Property Name	Value
Product	ferredoxin-fold anticodon-binding domain-containing protein 1
Orig transcript id	gnl\|cribi\|Naga_100008g122.7912.mrna
Orig protein id	gnl\|cribi\|Naga_100008g122.7912
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1104466..1106454 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g122	gene2626	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28020.1	cds2737	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2745	rna2745-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1104466..1106454-
coding sequence from alignment at CM002459.1:1104466..1106454-

mRNA sequence

>rna2745 ID=rna2745|Name=rna2745|organism=Nannochloropsis gaditana|type=mRNA|length=2358bp
CGTGGCGATACCTGCTTCAATAAAATGCCAGCCCCGGGCCATTCCACCCC
GGTCCGAAACCATTCTTTTGACGGTCGCTTGCATTCCACATGTTGCTAGG
GAAAAATATGATCAATTGGCTATAGTAAACATTGTATTCTGGCTCCATTT
CGACGATAGGAAGGATAACTTGGTGACTTATCCCCCCTAACAAGCGTGAC
ATCATTTCTTTTTTTCCACACTCCCACCGGACAAAGGATCTACGTTCACA
AAGCCACAGGCTGTGTGTTAGGCGATAATACACATGGCTCTCATTCAGCA
CGTCATGACGAAGAAGCTCTCCAGAGCACTGCTGGCGCGTCATAAAGGTG
CCCCCTTGTGTCGATCCCTGCGTACCCTCCTTCCAAACGAGCAAAAGCCT
CCTGATCCTTCATCGTCTTCCCCTTCGCCATTGCACCTGTCGCCCGCAAG
CCAGTCCCTTTCACGTGTGTGGAGATCATTTTCCTCCTCCACTACGACCG
TCGTGAGCACTGAGGAATACCCCAATGCGCACCATCCTGAAGCTGCCGAA
TACCTGAAACGGTCTTCAGTTGCCGTCGAGGAAGACGACAAAGACCCTTT
TTTCGACAAAACCTCAGCTTTGATGGAGGTTGAAGATCGACCCGGCGCTT
TGGCAGAGATGCTGTCTTATTTTGCCGCCCACCACGTCAACATCACCCGT
CTTGAGTCCCGGCCATCGAAAAAGCAATACGATGACCAAGGGCAGGGGCG
GTTGGTGTTCGACATGTACGTCGATTTTGAGGGATCGCGGGGGATCGCAC
GGGTGGATGCATTGCTCCAAGAACTGGGCGAGCACAGCCGTTCGTTGTTG
GTATTGGACAGGACGGAGGTCCCCTGGTTTCCCCGACAGGCCTGGCAACT
CGATACGATCGCGAACCGTGTACTCGACGCCGGTGTGGACTTGACCAGTG
ACCACCCGGGGTTCTCCGACCCTGTTTATCGGGCTCGGCGGGGCGAGCTT
GCTCAGATTGCCCGGCAATACCGGCACGGAGAGACGATTCCACACATTGC
TTACATGCCAGCAGAGATCGCGACCTGGAGCGCGGTGTTTCGCCGCCAAG
ACGAGCTCCTGCGTCGGTATGCCTGCCGGGAATACCTGGACATCTTGGCC
TTGATGAAGGAGGAGTGCGGATACGGGCCTGAAAGCATTCCTCAACAGGC
GGATATCACCCGTTTCCTCGCCCGGCGTACCGACTTTCGGCTGCGCCCTG
TGGCAGGCTTGCTCTCCTCCCGGGATTTTTTGAACGGCCTGGCTTTCCGG
GTATTTTTTTGCACCCAATACATTCGGCACCATTCCCGTCCCTTGTACAC
ACCAGAACCAGATATCTGCCACGAGCTCCTAGGGCATGCGCCGCTTTTTG
CAGATCCAGATTTTGCGGATTTTTCGAATGAAATTGGCCTGGCCTCTTTG
GGTGCTTCGGACGAGGAAGTCAAAAAGCTAGCCGCGTGCTATTGGCATTC
CGTGGAATTTGGTCTCTGCCGGCAGCACGCAGCGGGGACGGAGCTTTCTC
AGGAACAAGGCAACGAGACCGCTTCCAGCATCAAGGCCTACGGGGCTGGT
CTGTTGTCGTCTTTTGGTGAGCTGGAATACGCATGCGGGGGGGAGGAGGG
GAAGGAGGGAGGCCCGACCTTCCTGCCGTGGGATCCCGAGGTAGCGGCCG
TGCAGTCGTATCCCATCACCACGTATCAACCTGTGTACTTTGTGGCCGAA
AGTCTGCTCGATGCAAAGGAGAAAATGAGGAGGTACTGTGAAAAGAAAAT
GAGCCGGCCATTCTACGCCCGTTACATGCCGGAGGTGCAGAGCATATGGG
TAGACAGAGCCGTGCGGGTGGGGAAAAAGGTGGGCTAAGAGGACGTGAGG
AAGTGAAGTAAGGGACAGGTGGCAACGGACATACTCCGCACTCATTGAGT
GACTGGGCCTTGCCACGACGCCAGCGTCAAGCGTCGAGGCATGCCAGGTA
GCAGGGGGAAGGGGGGGCAGGGAAAAAAATCAAGTGAGTGCCATACGCAT
TCTACTGTATCAACGCGAGCTTTGGAGTGGATCGGGATGCAGAGAAGGAG
GTGATAGAAAGTTGTAGATGACTTCCTTTGGAGTGGACCGGGATGCAGAG
AAGGAGGTGATAGAAAGTTGTCGATGAGAAGGGTGTTACTCGATAGGGTC
TAAAATACTGTACATTGCGGGGGGGATATACAGATCGCTGAGTCACAGTA
GCCGGGCTGTGAAGAAAGGGCCGTAAGAGATGGCTTGATGTAACATGAAT
GCTATCGATAGCGCCAGTAATAGCTTTTACAAAGAAAAAACGACCGATTT
TACAGACA

protein sequence of rna2745

>rna2745-protein ID=rna2745-protein|Name=rna2745|organism=Nannochloropsis gaditana|type=polypeptide|length=514bp
MWLAAILSAQKRVSYRGLQLAAATLCLLSGQARRDRLCLFSCAFSTSPSQ
SPSPPAIPACHPTTFTGQSVRTILVVGDGDFSFSAALLPWLPPNVKLVTT
CLQRDEDDLIQRYPAAARNLQMLREQKSGKGSLGNAIGFGLDVMSSTFIA
SALAHITAPEDLNSPSRWQKIQKIETRSSQNGKDLSYSFNDLALPGKISS
KYDRVIFNFPHVPGKSNIKMNRALLSAFLSKSAHILQNPGGEVLLALCRG
QSGVEARDKRAYKASWRLPGFAADAGLAIYSNEAFPVRDTRYVKGMYQPS
GHRDGGKSSYVYDGKDPKLYTLLRPFPSSSASGPSFLHRKAIYGPVYAHE
VHLWISPWLQMKSHSEVASLLKIAIGKCLGPEDARLVAKVTYTESYLSPT
PSHQPKNRNSGFSSSELEEEKVDFALQESRAFEVQYAWREGGALTRDRAD
ELRQRVEDGLKQLSSGRCSSERKDMHDTAGQGQRSLVGEILLHKAGLPVG
DVTPLAAPTVFQAL

mRNA from alignment at CM002459.1:1104466..1106454-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2745 ID=rna2745|Name=rna2745|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp|location=Sequence derived from alignment at CM002459.1:1104466..1106454- (Nannochloropsis gaditana)
GGATACTTTAATTGGAAAAACATCTCAAGCAACCACTTAACTTTAAAGCT
AGGCATGTGGCTAGCAGCGATACTATCTGCACAGAAAAGGGTTTCCTACA
GAGGATTGCAGCTGGCGGCGGCCACGCTCTGTCTTCTCAGTGGCCAGGCG
CGTAGAGATCGTCTATGCCTTTTTTCCTGTGCGTTCTCTACTTCCCCTTC
GCAGTCGCCATCACCACCGGCAATACCTGCGTGTCATCCAACTACATTCA
CTGGTCAATCTGTTCGCACTATTTTAGTCGTAGGCGACGGGGACTTCTCT
TTTTCAGCGGCACTTCTCCCTTGGTTGCCTCCAAATGTGAAACTTGTTAC
GACATGCTTGCAGAGAGACGAGGACGATTTGATACAAAGGTACCCAGCCG
CCGCAAGAAACCTCCAAATGCTTCGTGAGCAAAAAAGCGGTAAAGGTTCT
TTGGGAAATGCAATAGGATTTGGCCTGGATGTTATGTCATCTACGTTCAT
AGCTTCAGCTTTAGCTCATATAACTGCTCCAGAGGATCTGAATAGCCCAT
CACGTTGGCAAAAGATACAGAAGATAGAAACGCGCTCCTCGCAAAATGGA
AAGGATTTGTCATATTCGTTCAATGACCTTGCGCTACCAGGGAAAATCTC
CAGCAAGTACGATCGTGTCATTTTTAATTTCCCCCACGTCCCCGGCAAGA
GTAATATCAAGATGAACCGTGCATTACTCAGCGCGTTCTTAAGCAAGTCA
GCACACATCCTCCAAAATCCTGGCGGAGAAGTCCTGCTCGCGCTTTGCCG
GGGTCAAAGCGGTGTGGAAGCCCGGGATAAGCGGGCATACAAGGCCTCGT
GGCGATTGCCAGGGTTCGCGGCCGATGCAGGTCTAGCCATATACAGCAAC
GAAGCATTCCCGGTCCGTGACACGAGATATGTCAAAGGTATGTATCAGCC
GTCAGGGCACCGAGACGGGGGGAAATCCTCGTACGTCTACGATGGAAAGG
ATCCCAAGCTTTACACGCTGCTCCGACCGTTCCCCTCCTCCTCTGCCTCC
GGGCCTTCTTTTTTGCATCGCAAAGCCATATACGGCCCAGTATACGCGCA
TGAGGTACACCTTTGGATCAGTCCTTGGTTGCAAATGAAAAGCCACTCGG
AAGTCGCGTCTCTACTTAAAATTGCTATTGGAAAATGCCTCGGACCGGAG
GACGCGAGGCTAGTCGCAAAAGTGACGTACACAGAAAGCTACTTGTCTCC
GACACCGTCGCATCAGCCCAAAAACCGAAACAGCGGTTTCAGCAGCAGCG
AATTGGAGGAAGAAAAAGTGGATTTTGCTTTGCAGGAGTCACGCGCCTTC
GAGGTGCAATATGCCTGGCGAGAAGGCGGGGCATTGACCCGCGATAGAGC
GGATGAGCTGCGGCAACGCGTAGAGGATGGTTTGAAACAGCTTTCTTCGG
GCCGTTGTTCCTCCGAAAGGAAAGATATGCATGACACAGCAGGACAAGGA
CAGAGGAGTCTTGTGGGCGAAATTTTGTTGCACAAGGCTGGCCTGCCCGT
GGGAGACGTGACCCCATTGGCTGCACCTACTGTGTTTCAAGCCTTGTAAA
AGTATGTGCCTCATAAAACCTTCTGTATTGTGACCATCTACAGAGAGGAA
GCTTGAAGCTAGCGATCTTCATCAAAATTTCTGCACAGAAGATGGGATGC
ACGCGAGCCTTCCTGACCTACCTATTTCTCTCGTCCCTTGGGGAATTTTC
TTGGTCCCTTTCGGACTCGCCCGTTCAAGGAGCATACAGCCATCGATCAT
TGTGTCCCCATACCACGAATTGTCTACAAATGATGTTTGTCGAATATAGT
TTTGTGATTTATCTTGTAAAGGCCTTCTACATACGTGTGAGATTCAAAAT
CGAGGGCCTCGGAACGCAAAAGCTTGTAATCCGTGTGCTAGATTGTCTGT
AAAATCGGTCGTTTTTTCTTTGTAAAAGCTATTACTGGC

Coding sequence (CDS) from alignment at CM002459.1:1104466..1106454-

>rna2745 ID=rna2745|Name=rna2745|organism=Nannochloropsis gaditana|type=CDS|length=1545bp|location=Sequence derived from alignment at CM002459.1:1104466..1106454- (Nannochloropsis gaditana)
ATGTGGCTAGCAGCGATACTATCTGCACAGAAAAGGGTTTCCTACAGAGG
ATTGCAGCTGGCGGCGGCCACGCTCTGTCTTCTCAGTGGCCAGGCGCGTA
GAGATCGTCTATGCCTTTTTTCCTGTGCGTTCTCTACTTCCCCTTCGCAG
TCGCCATCACCACCGGCAATACCTGCGTGTCATCCAACTACATTCACTGG
TCAATCTGTTCGCACTATTTTAGTCGTAGGCGACGGGGACTTCTCTTTTT
CAGCGGCACTTCTCCCTTGGTTGCCTCCAAATGTGAAACTTGTTACGACA
TGCTTGCAGAGAGACGAGGACGATTTGATACAAAGGTACCCAGCCGCCGC
AAGAAACCTCCAAATGCTTCGTGAGCAAAAAAGCGGTAAAGGTTCTTTGG
GAAATGCAATAGGATTTGGCCTGGATGTTATGTCATCTACGTTCATAGCT
TCAGCTTTAGCTCATATAACTGCTCCAGAGGATCTGAATAGCCCATCACG
TTGGCAAAAGATACAGAAGATAGAAACGCGCTCCTCGCAAAATGGAAAGG
ATTTGTCATATTCGTTCAATGACCTTGCGCTACCAGGGAAAATCTCCAGC
AAGTACGATCGTGTCATTTTTAATTTCCCCCACGTCCCCGGCAAGAGTAA
TATCAAGATGAACCGTGCATTACTCAGCGCGTTCTTAAGCAAGTCAGCAC
ACATCCTCCAAAATCCTGGCGGAGAAGTCCTGCTCGCGCTTTGCCGGGGT
CAAAGCGGTGTGGAAGCCCGGGATAAGCGGGCATACAAGGCCTCGTGGCG
ATTGCCAGGGTTCGCGGCCGATGCAGGTCTAGCCATATACAGCAACGAAG
CATTCCCGGTCCGTGACACGAGATATGTCAAAGGTATGTATCAGCCGTCA
GGGCACCGAGACGGGGGGAAATCCTCGTACGTCTACGATGGAAAGGATCC
CAAGCTTTACACGCTGCTCCGACCGTTCCCCTCCTCCTCTGCCTCCGGGC
CTTCTTTTTTGCATCGCAAAGCCATATACGGCCCAGTATACGCGCATGAG
GTACACCTTTGGATCAGTCCTTGGTTGCAAATGAAAAGCCACTCGGAAGT
CGCGTCTCTACTTAAAATTGCTATTGGAAAATGCCTCGGACCGGAGGACG
CGAGGCTAGTCGCAAAAGTGACGTACACAGAAAGCTACTTGTCTCCGACA
CCGTCGCATCAGCCCAAAAACCGAAACAGCGGTTTCAGCAGCAGCGAATT
GGAGGAAGAAAAAGTGGATTTTGCTTTGCAGGAGTCACGCGCCTTCGAGG
TGCAATATGCCTGGCGAGAAGGCGGGGCATTGACCCGCGATAGAGCGGAT
GAGCTGCGGCAACGCGTAGAGGATGGTTTGAAACAGCTTTCTTCGGGCCG
TTGTTCCTCCGAAAGGAAAGATATGCATGACACAGCAGGACAAGGACAGA
GGAGTCTTGTGGGCGAAATTTTGTTGCACAAGGCTGGCCTGCCCGTGGGA
GACGTGACCCCATTGGCTGCACCTACTGTGTTTCAAGCCTTGTAA

Synonyms

Publications