rna2742, rna2742 (mRNA) Nannochloropsis gaditana

Overview
Namerna2742
Unique Namerna2742
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2907
Alignment locationCM002459.1:1099403..1099972 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g118.7911.mrna
Orig protein idgnl|cribi|Naga_100008g118.7911
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1099403..1099972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g118gene2623Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2742rna2742-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28019.1cds2734Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2742 ID=rna2742|Name=rna2742|organism=Nannochloropsis gaditana|type=mRNA|length=2907bp
ATGTCCCCAGTGCAAGACCCGTTCCTAATACCTCCTCATCTATGCCGGAC
TGCTGGGACGAAACGCAGAATGTCCGGTGCAAGTTCATCTTGTACTTTCT
TGGCCGTTGTTGCTGCCACTGCTGCAGCTGCCAGTACCTTCCGTGGCTCC
TCCTCCCTGTACAGTCCCATCATGGTGGATGCCTTTGCACCGCCTACTCA
GTTCTCATGGGCTCCCCACAAGTCTTCAACAGCGCAGAGGACGGCGCATT
GTCAACGCGTCCCGTACTTTCTACCTACCACCTGTCTCGAAAAAGGCGGG
GCAAGAATGAGACATGCCAGGGACAGATCTTCCTTGCCGGTCCACGCCAT
CAGCCCGTTCCAAGAGCAGTACCGCGATGACGAGGGACTGCCGGAAAAGA
AAAAGTCTTCGAAGGGGAAGGATAAGGACCAGGTCGAAGGCACTCAGGCT
CCGTCGTCCTCCACGCCCTCCCTCCACGATGAGATCCTGACCAAGTTCAA
GTCCCTTTTCGAGGGAATAGCCTCCATCGACACCCACGCGGAATCGACGC
ACGAGGAGGCGGTTGCAACCCTTGCGGCCACTGCATTGGCGAAGACCAAG
GGCGGGGCCGGGGGACGAGGGGGCAGCAGCTTGGTAACCCTTGGAAGTCC
TTCCACTACGACCGTGTCGTTTCCGGATCAATCCCGCGCCGCTGATGTCG
CGGCCGCCGCTTTGCAATCACCTTGCGACAGTGCCTTGCCTGCCGTCGTC
CCTAAATCTTCCTCCTCCTCTCCTTCCCCCTCGACGTCCCTGAGCGCCAG
CGACGTGGCCTTGGGCAAGGTACCAGAACCCGTGAACGAAAATATTGCGC
GAATCTCGAGCAAGGTGCCCAACACGTGGTTGGCCGTTTGTCATTCCTCC
TCCCTCAAGAAGAAGGAGCTGAAAAAGATCTGGGTGGACGACAAGCCGAT
CTGCCTCTTTCGAGCCGCTTCGGGGGAGGTCAAGGCCATCAGCGACATTT
GTCTGCATCGGGCCGCTGCCCTGTCGGACGGCTGGTTGGACGGGGACCTG
GTCGTTTGCCCCTACCATGCCTACAAATTCGACGGGGAAGGCAAGCTCCG
CTATATCCCGGGGGTGGACGAGGGTATGCTGGCCAAGAACAAGCGGACGG
CGCGCACGGTGTGGTACAAAACCTTGGAGCAGGGAGGCTTGATCTACCTC
TTCCCGGATGCCATGCGGGCCGGCGCGATTGAGCAGCACGTGAAGCCCTT
CCTGATACCGGAGGAGGTGGACCCGTCCTTCCGAGTGGTGGAAGGCGTGG
CGGAGATCAAGGCGAGCGCGAATTTGGTGGTTGAGAATTTGTTGGACATG
CTCCACATATCGTACGTGCACTCCTTTGGGAACATGCAGGAACCGTTGCC
GTTCTCGGAGAATTACGACTATTTTTTCGACGACGAGGCCTCTCAGCTCC
TCCCGTACGCCAGGACCACCTTCAAATACCGGGCGGGACCTACTAGTATC
AGTAAAGTGGTGGGCCAAGTCAAAGAGGTGGTGGTGGAGAACGAGTTCCA
CTTGCCGTACACGACGGTGACCCGCGTCAAGTTTGGGAAGGATGTCAAGA
CGATCTATGTGGTGGCCGTCCCCGTGGAGGACGGGTTGACCGTGGTGCAT
TACAAGCTCTACCGTAATTTCATGTACGTGCACCCGCAGGACGAGAGTCC
CGTCAACAAGGGCCTGGACCATTTCTTCCAGTCGGTCATGCGTCTGACGT
TGAACGAGGACAAGGAGATATTGGAGTCTCTGTATCAGGAACACCAGGCC
GGGTATGTCTTGAGTCGGTACGACAAGCCTCTGAAAATCTATCGCAAAGC
CTTGAAGGAATTCATGGAGGCTAGCAAGTCTCGTGAATTTTTGGCCGAAA
GGCGCGCGTTGGAAATGGAACTCTTGCGCTTGATTGAGTGCACGGAGAGG
GGAAGAAAAGCGACCCGGGGCCAACACTCCATGATTCTGTCGATCGTCCA
AGGCTTGGAACGAGGCTTTGCCAGGCAGTTCAAGGACGAGGAAGGCGGGA
ATGGAGAGGTAGTAATAGAGGACAGCGCCGTCAATGGGACGTGGCATTTG
GTCTATGCTAATCCTGGTGATTTGGCGTCCCTTCCTCCCGACGATGAACA
GAAGGAGGAAGAACAACGGTCCCTCCGAATGCAAGACCTGCGCCCGGCAT
TGGACGCGACGGCCACAGCCGCGGCAGGGCCCTACCCATGGCGGACCATG
ACCCCAAGGCAGCAACAACGCATGACCCGTGAGGCGCGCGAGCGGATGCA
GCAAGCAGAAGAGAAAGGAGGGTCGGCCCATTCCCTTCCAGCTGCAGAAC
CGGCATCCAAGCCTCTTCCCCGTTCTCCTCGGGAGACGGACGATGTCTTG
CTGTATTCCGAAGAAAAATCGGCGCGTTTACAGGAGCGTCTGCGTTCCGC
CGGTGGAGAGAGATATCTGCTAGATTTTACACCGTCCAAAGGGCGGCCCT
TGTGGGTGGACACAGACGAATCTACTCAGACGATCGACACGTCGAAGAAC
CTTTTGTCGAACACGGCGGTCTACCAAGGGCTTCTGGGCATCACGACGAA
GGTGGAATTGAACGGGATCATCTCCACTCCCGCGGGAGGCCAGAAAAATA
AGGGCGATGCGCTGGGGGTGAAGGATGGAGGAAGGAACAAGGGCCATCGC
CAAGATGTACAGTTCACCTCGGCAAAAGTGGACGTGGGGGGTTTCAAGGT
GACGTTCCCACACATGGATGTGTTTGGCGTGAATGGCTGGCTGGATACGA
CCTTTGTGGATGAGCACATTCGAATATGCCGGGGAAACAGAGGCTCGATA
TTTGTTCTTACCCGGCGCCCGCTGACTGTGGCAGCCGTAGGAAAGGGCGA
AGTGTGA
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protein sequence of rna2742

>rna2742-protein ID=rna2742-protein|Name=rna2742|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MCRVCGPSVVIPTKMESDVAWWSRPGHSFLIFCVLEDTNALDPPLCLIAS
FDASEKACKILQAANKRKPYEADAKVHLTEGPSKSEWIYVRKGEAKIQVV
SQQHLYLSQESATSFKTIRNAAFCSSLVKKRKCACKDMLNRCEVGDKNIT
RALFSFLFPRV
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mRNA from alignment at CM002459.1:1099403..1099972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2742 ID=rna2742|Name=rna2742|organism=Nannochloropsis gaditana|type=mRNA|length=570bp|location=Sequence derived from alignment at CM002459.1:1099403..1099972+ (Nannochloropsis gaditana)
ATGTGTAGAGTTTGTGGGCCCTCGGTGGTGATTCCGACGAAAATGGAGAG
CGATGTTGCCTGGTGGTCGCGTCCGGGGCATTCCTTCTTAATTTTTTGTA
GACATTTCTGCAATTTATTCGTCGGATAAGTGGGGCCAGGCGTGTTGGAG
GATACAAATGCTCTGGATCCCCCCCTTTGTTTAATAGCATCCTTCGATGC
TTCAGAGAAAGCATGTAAGATTTTGCAGGCGGCAAACAAGAGAAAGCCTT
ATGAAGCAGATGCGAAAGTACATCTGACGGAAGGCCCCTCGAAGAGCGAG
TGGATTTACGTCCGAAAGGGAGAAGCCAAGATCCAGGTTGTCTCCCAGCA
GCATCTGTACTTATCGCAGGAAAGCGCAACAAGTTTTAAAACCATTAGAA
ATGCTGCATTCTGCTCCTCGCTGGTCAAGAAGTGAAGTATCGGCTGTTGT
GTCATAACCTTCGCCCGCGCAAGACGGAAGTGTGCATGCAAAGACATGTT
GAATAGATGTGAAGTCGGTGACAAAAACATTACTCGGGCCCTATTTTCTT
TCCTATTCCCCCGTGTGTGA
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Coding sequence (CDS) from alignment at CM002459.1:1099403..1099972+

>rna2742 ID=rna2742|Name=rna2742|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002459.1:1099403..1099972+ (Nannochloropsis gaditana)
ATGTGTAGAGTTTGTGGGCCCTCGGTGGTGATTCCGACGAAAATGGAGAG
CGATGTTGCCTGGTGGTCGCGTCCGGGGCATTCCTTCTTAATTTTTTGCG
TGTTGGAGGATACAAATGCTCTGGATCCCCCCCTTTGTTTAATAGCATCC
TTCGATGCTTCAGAGAAAGCATGTAAGATTTTGCAGGCGGCAAACAAGAG
AAAGCCTTATGAAGCAGATGCGAAAGTACATCTGACGGAAGGCCCCTCGA
AGAGCGAGTGGATTTACGTCCGAAAGGGAGAAGCCAAGATCCAGGTTGTC
TCCCAGCAGCATCTGTACTTATCGCAGGAAAGCGCAACAAGTTTTAAAAC
CATTAGAAATGCTGCATTCTGCTCCTCGCTGGTCAAGAAACGGAAGTGTG
CATGCAAAGACATGTTGAATAGATGTGAAGTCGGTGACAAAAACATTACT
CGGGCCCTATTTTCTTTCCTATTCCCCCGTGTGTGAATGTGTAGAGTTTG
TGGGCCCTCGGTGGTGATTCCGACGAAAATGGAGAGCGATGTTGCCTGGT
GGTCGCGTCCGGGGCATTCCTTCTTAATTTTTTGCGTGTTGGAGGATACA
AATGCTCTGGATCCCCCCCTTTGTTTAATAGCATCCTTCGATGCTTCAGA
GAAAGCATGTAAGATTTTGCAGGCGGCAAACAAGAGAAAGCCTTATGAAG
CAGATGCGAAAGTACATCTGACGGAAGGCCCCTCGAAGAGCGAGTGGATT
TACGTCCGAAAGGGAGAAGCCAAGATCCAGGTTGTCTCCCAGCAGCATCT
GTACTTATCGCAGGAAAGCGCAACAAGTTTTAAAACCATTAGAAATGCTG
CATTCTGCTCCTCGCTGGTCAAGAAACGGAAGTGTGCATGCAAAGACATG
TTGAATAGATGTGAAGTCGGTGACAAAAACATTACTCGGGCCCTATTTTC
TTTCCTATTCCCCCGTGTGTGAATGTGTAGAGTTTGTGGGCCCTCGGTGG
TGATTCCGACGAAAATGGAGAGCGATGTTGCCTGGTGGTCGCGTCCGGGG
CATTCCTTCTTAATTTTTTGCGTGTTGGAGGATACAAATGCTCTGGATCC
CCCCCTTTGTTTAATAGCATCCTTCGATGCTTCAGAGAAAGCATGTAAGA
TTTTGCAGGCGGCAAACAAGAGAAAGCCTTATGAAGCAGATGCGAAAGTA
CATCTGACGGAAGGCCCCTCGAAGAGCGAGTGGATTTACGTCCGAAAGGG
AGAAGCCAAGATCCAGGTTGTCTCCCAGCAGCATCTGTACTTATCGCAGG
AAAGCGCAACAAGTTTTAAAACCATTAGAAATGCTGCATTCTGCTCCTCG
CTGGTCAAGAAACGGAAGTGTGCATGCAAAGACATGTTGAATAGATGTGA
AGTCGGTGACAAAAACATTACTCGGGCCCTATTTTCTTTCCTATTCCCCC
GTGTGTGA
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Synonyms
Publications