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Properties
| Property Name | Value |
|---|
| Product | Integral membrane protein |
| Orig transcript id | gnl|cribi|Naga_100008g106.7850.mrna |
| Orig protein id | gnl|cribi|Naga_100008g106.7850 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:1065221..1066536 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2731 ID=rna2731|Name=rna2731|organism=Nannochloropsis gaditana|type=mRNA|length=5072bp
TTCTTAGATCTGAATTTTCTCACCCGGTTGCGAGGTATTGTGCCTTTTTT
AAAGCCCGGTAGCGTCAGAAGTTTTCCGTCTTCTGAGACACTCTCCTTGA
CGGCCCTTCCGCTTCCTTTCGTCACTCTTACATCCCTTTTTTCACATCCG
GCAAAAATCCCAAGGGAGAACCCTTGATCGTAAGGAGACGGAAAGCTTCT
GATCATGGCCAGAGACGGTAATCAGCTCTGAAAGGAGTCGGAAGCGAAAA
TACACAGGAGGACTAGCAGAAGGCCTTGGAAGGCAAGGCATCTTTGTATA
AGGCTGGCTGAGAAGAGGACACAGGGACGGAGAGGGACGACGCAATATGA
CTGGTCGCTCTGCCTTCCACTCGAGCGGCAGCAAACATCAGCACGCTGCT
CCGCCTCCACACACCACCGCAGCCGCTGCACTGGCAGGTAACCAAAGGAG
CAAGAGTCAGACAGTGCCGTCGAATCATAGCATATCAAGTAAAGGACCGG
GGGCAGTAATGGTGCCTGGTGGTCGCCCAAACGGGATGGAAGGTCAGCGC
CAAGAGCGCGGCTGTAACTCTCACGAAGATAGCATGACGAGTGCCGAGGA
CGGCGCGGGCAAGAGTCATTTCAGCAGCGTGCCGGCAGGTCGGGAGGTTT
CGTACAACGTGTGCGGGACGATTTTCAAAGTCGACAAGGCCTACCAGGAC
CTCAAGCCAGTTGGCAAAGGCTCGTACGGCATTGTATGTTCGGCGCTGAA
TGTGGAAACGAAAGAAAACGTGGCCATCAAGCGTGTCTCGCCCATTTCTA
CGCACGTCATCGATGCCAAACACGTCCTGCGCGAGATTCGTATGATGCGG
TACCTGGGTACTCATGAGAACATCATCACGCTTAAGGACCTCGCCCTCCG
GGACGCGGACGACGAGCTTTACATCGTCATGGAGCTCTTGGACTCGGACC
TGCACCGGATCATCCAATCCAAGCAGGCTCTTTCGGATGCCCACTTTCGA
TTCTTCATGCACCAGGTCTTGAAAGGCCTCAAATTTCTCCACGACCACCG
GATCATCCATCGGGACCTCAAGCCGGGGAACCTGTTGGTCACCCGGGCCT
GCGAGCTTCGGATCACGGATTTCGGCCTTGCCCGTGCCCGCCCCGCCGGG
AAAGGGCAGAACCCGGACGAGTCCATTGAGGAGCCCATGACGGAGCACGT
CGTCACACGCTGGTACCGGCCCCCGGAGCTGATGCTGTGCCCCGACGGCC
TCTACGACTACGCAGTGGATATGTGGTCTGTCGGCTGCATTTTCGCCGAG
TTGCTGGGACGGAAGCCTCTCTTCCCTGGGAAAAATTTCGTCCACCAGCT
GACCTTGATCTTCGACGTGATCGGGGCCCCCCGCCCCCAGGAAGTCGCCC
ACGTGAAGAGCAGTCAAGCCAAGCGGTTCTTGGACTCTGTCGCGGCCAAG
AAGAAAGTGCCTTTTGCCACCCTCTTCCCGGAGGCGAGTCGCGAGGCCCT
CTCCCTTTTGAACTCCCTGCTCGTCTTTGAACCCGCCCACCGGTTGACCG
TCGATCAGGCCTTGGGTCACAAGTACTTCGAACCTCTGCGGCATTCGGTC
CAATTGCAGCAGCAGCAATTGGCCGCAGACGCTGCCCAGGCAGCACGACC
TCCCCCCAAGCTGGACTTTGATTTCGAGACGGGTCATCTGAACAAGGGCC
AGCTGAAGCAGATGATACAGCGGGAGGTAGAGTCTTTCCGGATGGAGCGG
AGGAAGCTCTTTGGGTTGGAGGAGCCAGCCGAGGTGGGGGAGGCGGAGGT
GGGACCCTCTGGAAGAAGACACGACGGGGCTGCGGCTTTTGGCATGCCAA
ATACCTCGCCGGAGGCCTCGACCGTTAACGGGTGGGGCCCTTTGCAAGCC
GGGCGGCGGCAGTCAGTCATCACCCGAGAGGGCACCGCGGCGGCCACAGC
GACGGCATCCCTGGGCGGGAGGCATGCCCCCACCTCCCGACCGGCAGTGC
CCCAAGGACCAAGTTTCCCGGACACCCGCTCTTCCTCCCTGATGGAGGCA
GACGAGGGCGGGAACCCCCCCGACCTGACCGCCTCCGTCTCATCTTCCTC
CTCGACCGTGTGTATGGCCCCTACACAGCGCGCGGGGTTGACCGCCGCTT
GTGTCGGGGGTTTAGGCGGGAACATCGGCTGCGCCGGTCCTCATGAGCAA
GCATCCACCGGCTACTTTTCAGCCTCCCAAACCTCGTCTCAATTCTCGGC
CTCCGGGGCCTCCTCTGCCTCCGCCCCAACGGGTGCTTGCGGTGTCCCCC
AGCCCTCCCACCAGACCCCTTGGTCCGGCTGTCCCGGGCAGGGGGGGGGC
GTCCTCCATCCTTCCAAGCCTCCACATCCCATCCAGGGGCCTCGTCGACA
AAGCCTTCCCGCTGCCGTCCCCATGCCCCATTCGGCGTCGGTGGCGGGCA
TGATGCCCATCCTCGACGGCCATGGCCGCCCGCCACATCCGCATCCTCCT
GTGTTCACGCAGACACACCCCTTGCCCAGCATTTACGGTCGTCAAATCAG
TGCCCAGCCGCATCAGCAGCCAGGCATTTATGATCAGCAGCAATTCCTGT
TGCGGCAACGGGGATGGTCGGCAGAAACCTGTAGCAGCAGCAGCAGTAGC
AGCAGCAGCAGCAGCAGCAGCGGCCGCAGTACGGTCAGTACCAGCCGTTC
TCGGGAACGAAGGAGGAGGAGTAGCGGGTGCAATCGACAGGGTCCGCAGG
ACGCCCTTGCCGTCGACGAAGAGGGGGAGGAGGAAGCCATGGGCAGGAGG
TTGGCCAGAGGGAGGGTGGGTGGGGAAGGGATCGAGAACCAGCCTGGACA
CCAGAATTTGGAGGCACAAAATGCGGCATGCACGGTAGGCACGGGCGCTG
CCGGTAGCAGCCGGAGCTTGTGGGGGGCTGTCGGCCATAATCATGACGTG
TCAACCATTATGATGGCTTGCAAGGCACCTATGGCTGTCCCGGAGGGGGG
CAACTCGGAGGGAAGGGCTTCACGGCCCTGTAAGGCAGCGGAGGGCGAAA
GGGGAGATGCCATGGACGTGGAGCACGCGACGCATTCAAACCCGTCGCAG
TACGACGGCGGTGCCAATGGGAACCAAACCGTTGGGGCCAGCGCTCAGGC
GGCGGCAGCAGCTCTCGGAATGGCTGCCCCGGGGGGTCTCAAACCCAGCC
TGTGCTCCCCCTACGAGGGCGTAAGACATGGCAATGGCTCGGTATCTTCC
CTGGCTGCGAACTTGAACCCCACCCCTCCGGAAGCCGGACACTACGCCGG
CAATCCCGCACCGTATAGTCAGGTCGGATTAGGAAGCATGGGTAGGAGAG
GGCAGGCGGGACGGCCGACGCTGGGGGCGAGCAAACGGCGACATTCCGGG
TGCGATGTTCCTGAGAGCAACCACCACGCCATGCGTTTCCAGGGCCACCA
CATGCAATACCAACCGCAAATGATGCAGCCGCAGAACCTTCTGCAGCCAC
AACCCCACTCTTATTACTGTAAGCAAGGTGCACCCTGTCCTTCCAGCCTT
CGCCGCGATGAGCGTCCCGACAACCCCGTTAAATCCATGCTGTCTTCCTC
TTCCTCCTCGCCGGCCTTGTACCATCCTCCGGCGGGCGCCACTCGCCTCG
CACCTCTGAACCGAAACGCTGGAGCCGGTGATTCGGGAGCCGATCCGACC
GAGGGAATCTGCTCGGACTCCAGAGTCGAGCTGCCGCACCAAAGACAACA
GGAAGGACTGCAGTGCTCCCAGGAGCAGCACCAGCATCAGGCGCTATTCC
ATATGCAACAAGCCAACGGTGCCCACCCTGGTCCATCACCGGCACTAAGG
GGTGGAATCGACACGCAGAACACTGCCTTTGGTAATCACTTTCCCGTCCC
TGCAGCTGCGGCGGCAATGGATACTTTGTTGTCCTTCCATAGGGCGTCAC
TCCATTCCCACCGGCCTTCCTCCCCAAGGCCCGGACGCCCCAGTGCCGCC
TGGCAGATGAAAGGGGTCTCGACCTCTCCGGCCCATCCCGACCCCAGCAG
TACGAAACGTGAGGGTATGCAGGGCGCCGCGGACATGGCCACCCATCCAA
CCGGTACCGATAAACAATGTAAGCAGACCAATGCCCTCCGCCCGTCAGCC
CCTTCATCCTCCTCCAGAAATCTGTGGAGATAGATGGCATGCTCGTAAAG
AGAACAGGAATGATGTGACTGATGGTTGATGTGAGTGTGCCTGACAACCG
TCTTTTCTTCTCGTGTGCGGGCTCTGGCCTCACCCTCGCACTTGTTCGTG
TACGGTATGACACCATGCCAGAGCAGGAAAAGAGTGCGATGGCCAATCTT
TCCCCCGTGTTTGAGTATATCAAAATTGTCCGCCCGACTTCAGGACGGAA
ATATGACGCTCTCTCGTACATGTATTTGGCTCAGGTGGAAGGCACGGCCG
AGAAACGTTTTTTATTTGTTTGAATATTGCTTTGCTTTGATATTAGAGAC
GGAGATCGAAATTTGATAGACGAGGAACCTGCGAATGAACCACTGGTCTG
AAGAAATGAGAGGAAGAAGTTGACTGAGATGAGCAGAAACACAAAGCGAG
CACCATGGGCGGAAAGCAGGCAAAGTCCGCATGGCATCACAATGCCTCTG
TAAAAATAGGATGCGGGAGATGATGGGAGGGCTCGAGAGGAGCGAAAAAA
AGAAGTACCCCCTGAGCTCGAACAAAGTACGCGAGAAGGAAATAAGGGAG
ATGATTAGACAAGAAATCGGCAACAGTACAAAATACAGCGCGAGAGGCTC
GTGTAGAAAATTGTCGAAGGATGGAGGGAAGAAAAGAGGAAAACTTGCGA
AAGATAACCAGACAGATGGAGGCTGGTTAACACGAGAAAACAAACGAGTA
ATAGGTCGACCACGCAAACACAGCACACGTCACAGCGTGTCCCTTTCCTT
CTAACTAATTTACAATTGCGCCTCCCTGGTATTGAGTCGGTCGACGAGAC
GGCTACAGGGTCTCGCGAGACCTGTCGGCTTTCACTATTCCTCAAGCAGT
TTGAAGCAACAGCACATCGTCC back to topprotein sequence of rna2731 >rna2731-protein ID=rna2731-protein|Name=rna2731|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPR
GLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLL
ACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSG
P back to topmRNA from alignment at CM002459.1:1065221..1066536+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2731 ID=rna2731|Name=rna2731|organism=Nannochloropsis gaditana|type=mRNA|length=1316bp|location=Sequence derived from alignment at CM002459.1:1065221..1066536+ (Nannochloropsis gaditana)
AAAGCAGTGCTGAGCGTGGTTTGCCATCATGGGTGCACCAGGTTTGCCTC
AAAGGGGTGCAACGTACAGGGGCACCTGAAATCTCATCATTTCCCGTCCT
TGACATTCTCTCTGTTCTTGTCCCATACCCGCCATACCAGACTTTGACCC
GAAAATGATAATTTACCAGATCATCGCCCTCCAGGTAACAtccaccctcc
tttttcctacAGTGTGCGTTGACGCGTCTCACGGCCTCGTgacttctttc
cttctttctttttcttcccgccaGTGCCTCTACTATCTCGTCGAAGGAGG
AATCCTCATGGGGTTTAATCTGGTCTTTGGCCTGGATGTATCGCTGGCCC
AGATCTTTACGCCAAGAGGATTGGAGATCGAGTCGGCGGAAGGGCTGCTC
AATGTCCTAGCGCTGTTATTGTCGTTTGTCGCAgggtacggagggaggaa
tgagagggcggggaagaggaggctaAGCTCTGTCCTTTTGGGGTACAATT
CTCAATCTTTGAAGTCTGGCTTATTGTAGCTACTAAGAAGTGCTGTATGG
AGATCATCAATTAAATGGGAGAGAAATAAAGAGGTTTACGGAAGGGCACC
TGTGCAGAAAAGCTCCGTATAGAGGTCTCCCACATCGCCATGCATGTGCG
ACAAATTCCAAAATCGGTTCCCCCTTTCGACTCTGACAGGTCGGTTCTGC
TttgcgtggtggtggagcggGCTAAGAAGTGCCTCGATTTTACCGTCACC
ctattttttttccatctGCTGGCATGTGCCTTCTACGAGGTGAGAGCTTG
TGACTATTATCATGTCTAGTATTGTGTCCATTCCACTTCACCTGCGTTTG
TTAGTACGGTATAATTTGAAAGGCGGCATTCACGAACAAGCTTCATGGGG
CTGTTTTTATAGGCTATAACATGAAGCGCTCACCAAGCCAGGTCCCATCC
CAAAACTTGACGTGAACGTGGTATCCCCTTGTCCCATGCACTCATGCCCA
ACAGTCCTTTCCCGCAACCCTCTTGTGGTGGCTCTGCCACCTGGTCGGGG
TCTCCATCATGACACTCCTCGGTAAGTAGCCCGCACGTTCCTCTTGCCGC
AGGGTCTCGGGAACTTACTTGGGAGCCTGGCAACATCATGTATGACTGCC
ATTCCATTGGCATGTATGCGCACAATTGGTGGGTTGTGCATTCTTAAAAG
GATGACGGATgagtcctcttcccccttcttgtcTCATGACGCTAGGCGAG
CACCTCTGCGCTAGGAGTGAACTTCGTGATATACCTCTCTTCGTCGTGAG
CCAAAGCGGGCCTTAA back to topCoding sequence (CDS) from alignment at CM002459.1:1065221..1066536+ >rna2731 ID=rna2731|Name=rna2731|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002459.1:1065221..1066536+ (Nannochloropsis gaditana)
ATGGGTGCACCAGACTTTGACCCGAAAATGATAATTTACCAGATCATCGC
CCTCCAGTGCCTCTACTATCTCGTCGAAGGAGGAATCCTCATGGGGTTTA
ATCTGGTCTTTGGCCTGGATGTATCGCTGGCCCAGATCTTTACGCCAAGA
GGATTGGAGATCGAGTCGGCGGAAGGGCTGCTCAATGTCCTAGCGCTGTT
ATTGTCGTTTGTCGCAggGTCGGTTCTGCTttgcgtggtggtggagcggG
CTAAGAAGTGCCTCGATTTTACCGTCACCctattttttttccatctGCTG
GCATGTGCCTTCTACGAGTCCTTTCCCGCAACCCTCTTGTGGTGGCTCTG
CCACCTGGTCGGGGTCTCCATCATGACACTCCTCGGCGAGCACCTCTGCG
CTAGGAGTGAACTTCGTGATATACCTCTCTTCGTCGTGAGCCAAAGCGGG
CCTTAAATGGGTGCACCAGACTTTGACCCGAAAATGATAATTTACCAGAT
CATCGCCCTCCAGTGCCTCTACTATCTCGTCGAAGGAGGAATCCTCATGG
GGTTTAATCTGGTCTTTGGCCTGGATGTATCGCTGGCCCAGATCTTTACG
CCAAGAGGATTGGAGATCGAGTCGGCGGAAGGGCTGCTCAATGTCCTAGC
GCTGTTATTGTCGTTTGTCGCAggGTCGGTTCTGCTttgcgtggtggtgg
agcggGCTAAGAAGTGCCTCGATTTTACCGTCACCctattttttttccat
ctGCTGGCATGTGCCTTCTACGAGTCCTTTCCCGCAACCCTCTTGTGGTG
GCTCTGCCACCTGGTCGGGGTCTCCATCATGACACTCCTCGGCGAGCACC
TCTGCGCTAGGAGTGAACTTCGTGATATACCTCTCTTCGTCGTGAGCCAA
AGCGGGCCTTAAATGGGTGCACCAGACTTTGACCCGAAAATGATAATTTA
CCAGATCATCGCCCTCCAGTGCCTCTACTATCTCGTCGAAGGAGGAATCC
TCATGGGGTTTAATCTGGTCTTTGGCCTGGATGTATCGCTGGCCCAGATC
TTTACGCCAAGAGGATTGGAGATCGAGTCGGCGGAAGGGCTGCTCAATGT
CCTAGCGCTGTTATTGTCGTTTGTCGCAggGTCGGTTCTGCTttgcgtgg
tggtggagcggGCTAAGAAGTGCCTCGATTTTACCGTCACCctatttttt
ttccatctGCTGGCATGTGCCTTCTACGAGTCCTTTCCCGCAACCCTCTT
GTGGTGGCTCTGCCACCTGGTCGGGGTCTCCATCATGACACTCCTCGGCG
AGCACCTCTGCGCTAGGAGTGAACTTCGTGATATACCTCTCTTCGTCGTG
AGCCAAAGCGGGCCTTAAATGGGTGCACCAGACTTTGACCCGAAAATGAT
AATTTACCAGATCATCGCCCTCCAGTGCCTCTACTATCTCGTCGAAGGAG
GAATCCTCATGGGGTTTAATCTGGTCTTTGGCCTGGATGTATCGCTGGCC
CAGATCTTTACGCCAAGAGGATTGGAGATCGAGTCGGCGGAAGGGCTGCT
CAATGTCCTAGCGCTGTTATTGTCGTTTGTCGCAggGTCGGTTCTGCTtt
gcgtggtggtggagcggGCTAAGAAGTGCCTCGATTTTACCGTCACCcta
ttttttttccatctGCTGGCATGTGCCTTCTACGAGTCCTTTCCCGCAAC
CCTCTTGTGGTGGCTCTGCCACCTGGTCGGGGTCTCCATCATGACACTCC
TCGGCGAGCACCTCTGCGCTAGGAGTGAACTTCGTGATATACCTCTCTTC
GTCGTGAGCCAAAGCGGGCCTTAAATGGGTGCACCAGACTTTGACCCGAA
AATGATAATTTACCAGATCATCGCCCTCCAGTGCCTCTACTATCTCGTCG
AAGGAGGAATCCTCATGGGGTTTAATCTGGTCTTTGGCCTGGATGTATCG
CTGGCCCAGATCTTTACGCCAAGAGGATTGGAGATCGAGTCGGCGGAAGG
GCTGCTCAATGTCCTAGCGCTGTTATTGTCGTTTGTCGCAggGTCGGTTC
TGCTttgcgtggtggtggagcggGCTAAGAAGTGCCTCGATTTTACCGTC
ACCctattttttttccatctGCTGGCATGTGCCTTCTACGAGTCCTTTCC
CGCAACCCTCTTGTGGTGGCTCTGCCACCTGGTCGGGGTCTCCATCATGA
CACTCCTCGGCGAGCACCTCTGCGCTAGGAGTGAACTTCGTGATATACCT
CTCTTCGTCGTGAGCCAAAGCGGGCCTTAAATGGGTGCACCAGACTTTGA
CCCGAAAATGATAATTTACCAGATCATCGCCCTCCAGTGCCTCTACTATC
TCGTCGAAGGAGGAATCCTCATGGGGTTTAATCTGGTCTTTGGCCTGGAT
GTATCGCTGGCCCAGATCTTTACGCCAAGAGGATTGGAGATCGAGTCGGC
GGAAGGGCTGCTCAATGTCCTAGCGCTGTTATTGTCGTTTGTCGCAggGT
CGGTTCTGCTttgcgtggtggtggagcggGCTAAGAAGTGCCTCGATTTT
ACCGTCACCctattttttttccatctGCTGGCATGTGCCTTCTACGAGTC
CTTTCCCGCAACCCTCTTGTGGTGGCTCTGCCACCTGGTCGGGGTCTCCA
TCATGACACTCCTCGGCGAGCACCTCTGCGCTAGGAGTGAACTTCGTGAT
ATACCTCTCTTCGTCGTGAGCCAAAGCGGGCCTTAA back to top
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