EWM27958.1, cds2723 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|585110299|gb|EWM27958.1| (Integral membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 303.138 bits (775), Expect = 4.184e-104 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query: 1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP 151
MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP
Sbjct: 1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP 151
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|224009948|ref|XP_002293932.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220970604|gb|EED88941.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 135.576 bits (340), Expect = 4.239e-38 Identity = 64/141 (45.39%), Postives = 101/141 (71.63%), Query Frame = 0
Query: 5 DFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFV 145
F+P++I+ QI+ALQ +YLV G IL +++F V++ +IFT + L++ +A G ++ A+L+S + GSVLL +VE++KKCLDF VTLF H++ C+ Y+ P+T WW+ H++G+ M +LGE+LC++ EL DIPL V
Sbjct: 2 QFNPRLILSQIVALQSFHYLVLGFILQVNHVLFATSVTVDRIFTAKYLDLWTALGWVDNAAVLVSSLVGSVLLVFIVEKSKKCLDFCVTLFLIHVIICSIYDGVPSTWDWWIVHILGMIAMVVLGEYLCSKRELSDIPLLV 142
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|971518370|dbj|GAQ79834.1| (Integral membrane protein SYS1-related [Klebsormidium nitens]) HSP 1 Score: 130.568 bits (327), Expect = 7.114e-36 Identity = 70/150 (46.67%), Postives = 92/150 (61.33%), Query Frame = 0
Query: 2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP 151
GA +DP +I+ QI+ LQCL+YL GG+L F L SL F R + + + +G L +LA L + G+ L +VERAKKCLDF+ TLF HLL C Y PA+ WW+ + V +M++LGE LC R ELRDIP+ SQSGP
Sbjct: 4 GAMVWDPWLILAQILVLQCLFYLSLGGLLWVFVGSHELAFSLHHFFDWRYMTVRTVKGWLTMLAFLCNAFVGAGFLLFLVERAKKCLDFSATLFLVHLLLCIAYAGVPASFAWWIVSGLSVVVMSVLGEWLCMRRELRDIPIRSRSQSGP 153
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|299472948|emb|CBN77349.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 129.798 bits (325), Expect = 1.015e-35 Identity = 60/140 (42.86%), Postives = 89/140 (63.57%), Query Frame = 0
Query: 5 DFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLF 144
FDPK+I+ QI+ALQ YY+ G L F VFG V IF+ + + + G + +L+ ++G++LL ++VERAKKCLDFT TL+ H+ C+FY+ P WW+ + +++M +LGE+ C+R ELRDIPLF
Sbjct: 3 QFDPKLIVCQIVALQSFYYVAMGVFLGSFRAVFGTQVGTRLIFSGELVSLSTTAGWTAICCQVLTAISGALLLPMIVERAKKCLDFTSTLYIIHVAICSFYDGIPHNWEWWILQMASLALMVVLGEYACSRRELRDIPLF 142
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|1072223105|gb|OEU07862.1| (hypothetical protein FRACYDRAFT_197215 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 122.094 bits (305), Expect = 1.157e-32 Identity = 56/141 (39.72%), Postives = 93/141 (65.96%), Query Frame = 0
Query: 4 PDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSF-VAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
+F+P++I QI+A+QC +YL G + ++++G +++ ++FT ++I G + A+ LS+ + GS L+ ++VE++KKCLDF+ TLF HL+ Y+ FPAT WW+ H+ + M LLGE+LCAR E+ DIP+
Sbjct: 2 KNFNPRLIFSQIVAMQCCHYLFLGLLFQINHILYGQSITIDRMFTDEYIQIWHTIGWPDSFAVFLSYSIVGSFLMAIIVEKSKKCLDFSFTLFVVHLVIVCAYDGFPATWDWWIVHICSMIAMVLLGEYLCARREMEDIPM 142
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|635358895|emb|CCI50712.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 122.094 bits (305), Expect = 1.174e-32 Identity = 59/142 (41.55%), Postives = 89/142 (62.68%), Query Frame = 0
Query: 2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
GA +DPK+I+ QII LQC +Y+ +G +L L G ++ F + + EG+ N +++ S V ++ L V VERAKKCLDF +TL+F L+ + Y FP + WW+ H++ ++I LLGE+LCAR EL+DIP+
Sbjct: 6 GAGQWDPKLIVLQIICLQCSFYISQGVLLF---LCHGFSLTFDDFFAYYAQNLSNVEGIKNSFSVIASSVISAIALSVFVERAKKCLDFGITLYFVDLIIHSIYLDFPRSWEWWIVHVIALAITVLLGEYLCARQELQDIPM 144
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|1013939815|gb|KYQ93504.1| (hypothetical protein DLAC_06201 [Dictyostelium lacteum]) HSP 1 Score: 124.02 bits (310), Expect = 4.628e-32 Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 0
Query: 6 FDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
+DPK+II QII++QCLYY + G L + +F ++L QI+ L I + G + V + LL+ V GS+ L +VER+KKCLD + ++ HL+ + Y FP TL WW HL+ + +M + GE+LC R EL DIPL
Sbjct: 8 WDPKLIIGQIISIQCLYYAILAGSLYVLDSLFYEQLTLEQIYNYTVLNIHTKYGRITVASTLLNSVFGSICLKYIVERSKKCLDHSASVTIIHLIIVSIYSGFPKTLTWWSIHLISLILMAMFGEYLCMRKELMDIPL 145
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|848919557|ref|XP_012856835.1| (PREDICTED: protein SYS1 homolog [Erythranthe guttata] >gi|604301965|gb|EYU21551.1| hypothetical protein MIMGU_mgv1a015601mg [Erythranthe guttata]) HSP 1 Score: 120.168 bits (300), Expect = 6.026e-32 Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = 0
Query: 2 GAPDFDPKMIIYQIIALQCLYYLVEG---GILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
G +DP +I+ QI++LQCLYYL G IL+G + +SL F + +A G + ++LLS +AG+ L +VERAKKCLDF TL+ HL C Y +PA++ WW+ ++ G+++M LLGE+LC R ELR+IP+
Sbjct: 4 GTAAWDPWLIVAQIVSLQCLYYLTLGVLLSILVGTRVS---KMSLVYFFDYATVTASTATGWCVMASILLSSIAGAGYLVYLVERAKKCLDFCATLYIIHLFICIAYGGWPASVTWWVVNITGLAVMALLGEYLCMRRELREIPI 145
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|1117567508|ref|XP_019454800.1| (PREDICTED: protein SYS1 homolog [Lupinus angustifolius]) HSP 1 Score: 120.168 bits (300), Expect = 6.719e-32 Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query: 2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLD---VSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
GA +DP +I+ QI+ LQCLYY+ G M +L+ G+ +SL F + + G + + +LS VAG+V + +VERAKKCLDF+ TL+ HL C Y +P++L WW+ H +G++ M LLGE+LC + ELR+IP+
Sbjct: 4 GAVVWDPWLIVVQIVCLQCLYYITLG---MFLSLLVGIRLSRMSLVYFFDYVTITTSTVTGWCVIASFVLSSVAGAVYMLYLVERAKKCLDFSATLYIIHLFICILYGGWPSSLTWWIVHGIGIAAMALLGEYLCIKRELREIPI 145
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|675175629|ref|XP_008896699.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566011756|gb|ETI34667.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567949282|gb|ETK75014.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567977943|gb|ETL28437.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568007448|gb|ETL81687.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568037306|gb|ETM34892.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568102438|gb|ETN17109.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570315517|gb|ETO63465.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570939310|gb|ETP04567.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570969573|gb|ETP32692.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970618745|gb|KUF66793.1| SYS1 protein [Phytophthora nicotianae]) HSP 1 Score: 119.783 bits (299), Expect = 1.203e-31 Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 0
Query: 2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
GA + PK+I+ Q++A+QC +Y+ +G +L + G V+L Q F + + +GL N A++ + +V L + VERAKKCLDF VTL+F LA FY FP WWL HLV S+ +LGE+LC+R EL +IP+
Sbjct: 6 GAARWAPKLILLQMLAMQCSHYVAQGLVL---GICHGAHVTLDQFFAYHTQTVVTVDGLKNCFAIVAASFVSAVCLALFVERAKKCLDFGVTLYFIDFLAQCFYSEFPKMWDWWLVHLVAASVTIVLGEYLCSRRELEEIPM 144 The following BLAST results are available for this feature:
BLAST of EWM27958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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