EWM27958.1, cds2723 (CDS) Nannochloropsis gaditana

Overview
NameEWM27958.1
Unique Namecds2723
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1065249..1065261 +
Alignment locationCM002459.1:1065361..1065404 +
Alignment locationCM002459.1:1065495..1065655 +
Alignment locationCM002459.1:1065910..1066009 +
Alignment locationCM002459.1:1066225..1066291 +
Alignment locationCM002459.1:1066466..1066536 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27958.1
ProductIntegral membrane protein
Orig transcript idgnl|cribi|Naga_100008g106.7850.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1065249..1065261 +
CM002459.1supercontigCM002459.1:1065361..1065404 +
CM002459.1supercontigCM002459.1:1065495..1065655 +
CM002459.1supercontigCM002459.1:1065910..1066009 +
CM002459.1supercontigCM002459.1:1066225..1066291 +
CM002459.1supercontigCM002459.1:1066466..1066536 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR019185Integral_membrane_SYS1-rel
Homology
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|585110299|gb|EWM27958.1| (Integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 303.138 bits (775), Expect = 4.184e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP 151
            MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP
Sbjct:    1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP 151          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|224009948|ref|XP_002293932.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220970604|gb|EED88941.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 135.576 bits (340), Expect = 4.239e-38
Identity = 64/141 (45.39%), Postives = 101/141 (71.63%), Query Frame = 0
Query:    5 DFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFV 145
             F+P++I+ QI+ALQ  +YLV G IL   +++F   V++ +IFT + L++ +A G ++  A+L+S + GSVLL  +VE++KKCLDF VTLF  H++ C+ Y+  P+T  WW+ H++G+  M +LGE+LC++ EL DIPL V
Sbjct:    2 QFNPRLILSQIVALQSFHYLVLGFILQVNHVLFATSVTVDRIFTAKYLDLWTALGWVDNAAVLVSSLVGSVLLVFIVEKSKKCLDFCVTLFLIHVIICSIYDGVPSTWDWWIVHILGMIAMVVLGEYLCSKRELSDIPLLV 142          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|971518370|dbj|GAQ79834.1| (Integral membrane protein SYS1-related [Klebsormidium nitens])

HSP 1 Score: 130.568 bits (327), Expect = 7.114e-36
Identity = 70/150 (46.67%), Postives = 92/150 (61.33%), Query Frame = 0
Query:    2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQSGP 151
            GA  +DP +I+ QI+ LQCL+YL  GG+L  F     L  SL   F  R + + + +G L +LA L +   G+  L  +VERAKKCLDF+ TLF  HLL C  Y   PA+  WW+   + V +M++LGE LC R ELRDIP+   SQSGP
Sbjct:    4 GAMVWDPWLILAQILVLQCLFYLSLGGLLWVFVGSHELAFSLHHFFDWRYMTVRTVKGWLTMLAFLCNAFVGAGFLLFLVERAKKCLDFSATLFLVHLLLCIAYAGVPASFAWWIVSGLSVVVMSVLGEWLCMRRELRDIPIRSRSQSGP 153          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|299472948|emb|CBN77349.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.798 bits (325), Expect = 1.015e-35
Identity = 60/140 (42.86%), Postives = 89/140 (63.57%), Query Frame = 0
Query:    5 DFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLF 144
             FDPK+I+ QI+ALQ  YY+  G  L  F  VFG  V    IF+   + + +  G   +   +L+ ++G++LL ++VERAKKCLDFT TL+  H+  C+FY+  P    WW+  +  +++M +LGE+ C+R ELRDIPLF
Sbjct:    3 QFDPKLIVCQIVALQSFYYVAMGVFLGSFRAVFGTQVGTRLIFSGELVSLSTTAGWTAICCQVLTAISGALLLPMIVERAKKCLDFTSTLYIIHVAICSFYDGIPHNWEWWILQMASLALMVVLGEYACSRRELRDIPLF 142          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|1072223105|gb|OEU07862.1| (hypothetical protein FRACYDRAFT_197215 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 122.094 bits (305), Expect = 1.157e-32
Identity = 56/141 (39.72%), Postives = 93/141 (65.96%), Query Frame = 0
Query:    4 PDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSF-VAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
             +F+P++I  QI+A+QC +YL  G +    ++++G  +++ ++FT   ++I    G  +  A+ LS+ + GS L+ ++VE++KKCLDF+ TLF  HL+    Y+ FPAT  WW+ H+  +  M LLGE+LCAR E+ DIP+
Sbjct:    2 KNFNPRLIFSQIVAMQCCHYLFLGLLFQINHILYGQSITIDRMFTDEYIQIWHTIGWPDSFAVFLSYSIVGSFLMAIIVEKSKKCLDFSFTLFVVHLVIVCAYDGFPATWDWWIVHICSMIAMVLLGEYLCARREMEDIPM 142          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|635358895|emb|CCI50712.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 122.094 bits (305), Expect = 1.174e-32
Identity = 59/142 (41.55%), Postives = 89/142 (62.68%), Query Frame = 0
Query:    2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
            GA  +DPK+I+ QII LQC +Y+ +G +L    L  G  ++    F      + + EG+ N  +++ S V  ++ L V VERAKKCLDF +TL+F  L+  + Y  FP +  WW+ H++ ++I  LLGE+LCAR EL+DIP+
Sbjct:    6 GAGQWDPKLIVLQIICLQCSFYISQGVLLF---LCHGFSLTFDDFFAYYAQNLSNVEGIKNSFSVIASSVISAIALSVFVERAKKCLDFGITLYFVDLIIHSIYLDFPRSWEWWIVHVIALAITVLLGEYLCARQELQDIPM 144          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|1013939815|gb|KYQ93504.1| (hypothetical protein DLAC_06201 [Dictyostelium lacteum])

HSP 1 Score: 124.02 bits (310), Expect = 4.628e-32
Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 0
Query:    6 FDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
            +DPK+II QII++QCLYY +  G L   + +F   ++L QI+    L I +  G + V + LL+ V GS+ L  +VER+KKCLD + ++   HL+  + Y  FP TL WW  HL+ + +M + GE+LC R EL DIPL
Sbjct:    8 WDPKLIIGQIISIQCLYYAILAGSLYVLDSLFYEQLTLEQIYNYTVLNIHTKYGRITVASTLLNSVFGSICLKYIVERSKKCLDHSASVTIIHLIIVSIYSGFPKTLTWWSIHLISLILMAMFGEYLCMRKELMDIPL 145          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|848919557|ref|XP_012856835.1| (PREDICTED: protein SYS1 homolog [Erythranthe guttata] >gi|604301965|gb|EYU21551.1| hypothetical protein MIMGU_mgv1a015601mg [Erythranthe guttata])

HSP 1 Score: 120.168 bits (300), Expect = 6.026e-32
Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    2 GAPDFDPKMIIYQIIALQCLYYLVEG---GILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
            G   +DP +I+ QI++LQCLYYL  G    IL+G  +     +SL   F    +   +A G   + ++LLS +AG+  L  +VERAKKCLDF  TL+  HL  C  Y  +PA++ WW+ ++ G+++M LLGE+LC R ELR+IP+
Sbjct:    4 GTAAWDPWLIVAQIVSLQCLYYLTLGVLLSILVGTRVS---KMSLVYFFDYATVTASTATGWCVMASILLSSIAGAGYLVYLVERAKKCLDFCATLYIIHLFICIAYGGWPASVTWWVVNITGLAVMALLGEYLCMRRELREIPI 145          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|1117567508|ref|XP_019454800.1| (PREDICTED: protein SYS1 homolog [Lupinus angustifolius])

HSP 1 Score: 120.168 bits (300), Expect = 6.719e-32
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLD---VSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
            GA  +DP +I+ QI+ LQCLYY+  G   M  +L+ G+    +SL   F    +   +  G   + + +LS VAG+V +  +VERAKKCLDF+ TL+  HL  C  Y  +P++L WW+ H +G++ M LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVVQIVCLQCLYYITLG---MFLSLLVGIRLSRMSLVYFFDYVTITTSTVTGWCVIASFVLSSVAGAVYMLYLVERAKKCLDFSATLYIIHLFICILYGGWPSSLTWWIVHGIGIAAMALLGEYLCIKRELREIPI 145          
BLAST of EWM27958.1 vs. NCBI_GenBank
Match: gi|675175629|ref|XP_008896699.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566011756|gb|ETI34667.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567949282|gb|ETK75014.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567977943|gb|ETL28437.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568007448|gb|ETL81687.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568037306|gb|ETM34892.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568102438|gb|ETN17109.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570315517|gb|ETO63465.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570939310|gb|ETP04567.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570969573|gb|ETP32692.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970618745|gb|KUF66793.1| SYS1 protein [Phytophthora nicotianae])

HSP 1 Score: 119.783 bits (299), Expect = 1.203e-31
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 0
Query:    2 GAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPL 143
            GA  + PK+I+ Q++A+QC +Y+ +G +L    +  G  V+L Q F      + + +GL N  A++ +    +V L + VERAKKCLDF VTL+F   LA  FY  FP    WWL HLV  S+  +LGE+LC+R EL +IP+
Sbjct:    6 GAARWAPKLILLQMLAMQCSHYVAQGLVL---GICHGAHVTLDQFFAYHTQTVVTVDGLKNCFAIVAASFVSAVCLALFVERAKKCLDFGVTLYFIDFLAQCFYSEFPKMWDWWLVHLVAASVTIVLGEYLCSRRELEEIPM 144          
The following BLAST results are available for this feature:
BLAST of EWM27958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110299|gb|EWM27958.1|4.184e-104100.00Integral membrane protein [Nannochloropsis gaditan... [more]
gi|224009948|ref|XP_002293932.1|4.239e-3845.39predicted protein, partial [Thalassiosira pseudona... [more]
gi|971518370|dbj|GAQ79834.1|7.114e-3646.67Integral membrane protein SYS1-related [Klebsormid... [more]
gi|299472948|emb|CBN77349.1|1.015e-3542.86conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072223105|gb|OEU07862.1|1.157e-3239.72hypothetical protein FRACYDRAFT_197215 [Fragilario... [more]
gi|635358895|emb|CCI50712.1|1.174e-3241.55unnamed protein product [Albugo candida][more]
gi|1013939815|gb|KYQ93504.1|4.628e-3243.48hypothetical protein DLAC_06201 [Dictyostelium lac... [more]
gi|848919557|ref|XP_012856835.1|6.026e-3242.76PREDICTED: protein SYS1 homolog [Erythranthe gutta... [more]
gi|1117567508|ref|XP_019454800.1|6.719e-3242.07PREDICTED: protein SYS1 homolog [Lupinus angustifo... [more]
gi|675175629|ref|XP_008896699.1|1.203e-3142.25hypothetical protein, variant [Phytophthora parasi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2731rna2731Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications