rna2728, rna2728 (mRNA) Nannochloropsis gaditana

Overview
Namerna2728
Unique Namerna2728
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length207
Alignment locationCM002459.1:1055151..1055911 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g101.7825.mrna
Orig protein idgnl|cribi|Naga_100008g101.7825
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1055151..1055911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g101gene2609Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2728rna2728-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27933.1cds2720Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2728 ID=rna2728|Name=rna2728|organism=Nannochloropsis gaditana|type=mRNA|length=207bp
ATGTTAATGCATAAAATTGACCTGCTGTTGTGGGAGGGCTCGTGTGTGTC
ATTGGTTCGACCCCCGGATCGGCCTGGGGCATCACATGGTAGCACATCCA
GTAGTGTGAATTCCTTCACTGTTCGAGACGGCAGGTCCTCTGGGCTTCTA
GGAAAGGGCCTGTGCCCATTTAAGGGGTACAACGTTGAGCAAAGAGGGAT
GGAATGA
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protein sequence of rna2728

>rna2728-protein ID=rna2728-protein|Name=rna2728|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MILANAALRQSSFALSRSSPVRSRLIIPFRGLAKGSPTQVAAEETREANA
GYGIQIVSGRHTLYSDLMPEAGGNDKGPSPKEYALVALSSCTLMTVRMYS
DSMIKSGKWPGKSIEKLSVSCSEHGDDQHVPLNIQVELKLRSNLDEEQIK
RLVAAAEKCPVKRMMKGGVKNGITTVLVIRKEGSTAGCEKYSGHDKDTFD
STYFYPIFVIRYSMAETPFFLIFTLFVYLVDMIL
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mRNA from alignment at CM002459.1:1055151..1055911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2728 ID=rna2728|Name=rna2728|organism=Nannochloropsis gaditana|type=mRNA|length=761bp|location=Sequence derived from alignment at CM002459.1:1055151..1055911+ (Nannochloropsis gaditana)
ATGATTCTGGCCAACGCAGCTTTACGGCAATCCTCGTTCGCCCTCTCTAG
GTCGTCGCCTGTCCGTAGTCGATTGATCATACCTTTTCGAGGCCTTGCAA
AAGGTTCTCCTACGCAGGTCGCTGCAGAGGAGACACGAGAAGCCAATGCT
GGCTACGGCATCCAAATTGTCTCGGGCCGTCACACATTGTACAGTGATTT
AATGCCAGAGGCTGGAGGTAATGATAAGGGACCGAGTCCTAAAGAATACG
CATTGGTTGCTCTCAGCTCATGCACCTTGATGACGGTGCGAATGTATTCC
GACTCCATGATCAAGAGCGGGAAATGGCCCGGGAAAAGTATCGAGAAATT
GTCCGTTTCGTGCAGTGAGCACGGAGACGATCAGCATGTACCGCTCAATA
TCCAAGTGGAGCTTAAGTTGCGGTCAAACCTCGACGAGGAACAGATCAAA
CGCCTGGTGGCTGCAGCGGAAAAATGCCCGGTGAAGCGAATGATGAAAGG
AGGCGTTAAGAACGGGATTACCACCGTTCTGGTGAAAGATTGATTAGCAA
CATTATATAAGTCGTCAGTCTGTTTCCGAATAGAAAGGTGATCAGAAAAG
AAGGCAGTACGGCAGGTTGTGAGAAATATTCAGGTCACGATAAAGACACA
TTCGATAGTACGTACTTTTATCCAATTTTCGTCATAAGATATTCGATGGC
AGAGACACCATTCTTCCTTATCTTCACTCTCTTCGTGTATTTAGTTGATA
TGATTTTATAA
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Coding sequence (CDS) from alignment at CM002459.1:1055151..1055911+

>rna2728 ID=rna2728|Name=rna2728|organism=Nannochloropsis gaditana|type=CDS|length=1410bp|location=Sequence derived from alignment at CM002459.1:1055151..1055911+ (Nannochloropsis gaditana)
ATGATTCTGGCCAACGCAGCTTTACGGCAATCCTCGTTCGCCCTCTCTAG
GTCGTCGCCTGTCCGTAGTCGATTGATCATACCTTTTCGAGGCCTTGCAA
AAGGTTCTCCTACGCAGGTCGCTGCAGAGGAGACACGAGAAGCCAATGCT
GGCTACGGCATCCAAATTGTCTCGGGCCGTCACACATTGTACAGTGATTT
AATGCCAGAGGCTGGAGGTAATGATAAGGGACCGAGTCCTAAAGAATACG
CATTGGTTGCTCTCAGCTCATGCACCTTGATGACGGTGCGAATGTATTCC
GACTCCATGATCAAGAGCGGGAAATGGCCCGGGAAAAGTATCGAGAAATT
GTCCGTTTCGTGCAGTGAGCACGGAGACGATCAGCATGTACCGCTCAATA
TCCAAGTGGAGCTTAAGTTGCGGTCAAACCTCGACGAGGAACAGATCAAA
CGCCTGGTGGCTGCAGCGGAAAAATGCCCGGTGAAGCGAATGATGAAAGG
AGGCGTTAAGAACGGGATTACCACCGTTCTGGTGATCAGAAAAGAAGGCA
GTACGGCAGGTTGTGAGAAATATTCAGGTCACGATAAAGACACATTCGAT
AGTACGTACTTTTATCCAATTTTCGTCATAAGATATTCGATGGCAGAGAC
ACCATTCTTCCTTATCTTCACTCTCTTCGTGTATTTAGTTGATATGATTT
TATAAATGATTCTGGCCAACGCAGCTTTACGGCAATCCTCGTTCGCCCTC
TCTAGGTCGTCGCCTGTCCGTAGTCGATTGATCATACCTTTTCGAGGCCT
TGCAAAAGGTTCTCCTACGCAGGTCGCTGCAGAGGAGACACGAGAAGCCA
ATGCTGGCTACGGCATCCAAATTGTCTCGGGCCGTCACACATTGTACAGT
GATTTAATGCCAGAGGCTGGAGGTAATGATAAGGGACCGAGTCCTAAAGA
ATACGCATTGGTTGCTCTCAGCTCATGCACCTTGATGACGGTGCGAATGT
ATTCCGACTCCATGATCAAGAGCGGGAAATGGCCCGGGAAAAGTATCGAG
AAATTGTCCGTTTCGTGCAGTGAGCACGGAGACGATCAGCATGTACCGCT
CAATATCCAAGTGGAGCTTAAGTTGCGGTCAAACCTCGACGAGGAACAGA
TCAAACGCCTGGTGGCTGCAGCGGAAAAATGCCCGGTGAAGCGAATGATG
AAAGGAGGCGTTAAGAACGGGATTACCACCGTTCTGGTGATCAGAAAAGA
AGGCAGTACGGCAGGTTGTGAGAAATATTCAGGTCACGATAAAGACACAT
TCGATAGTACGTACTTTTATCCAATTTTCGTCATAAGATATTCGATGGCA
GAGACACCATTCTTCCTTATCTTCACTCTCTTCGTGTATTTAGTTGATAT
GATTTTATAA
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Synonyms
Publications