rna2725, rna2725 (mRNA) Nannochloropsis gaditana

Overview
Namerna2725
Unique Namerna2725
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length614
Alignment locationCM002459.1:1051261..1052037 +

Link to JBrowse

Properties
Property NameValue
Productnudix hydrolase 3
Orig transcript idgnl|cribi|Naga_100008g98.7860.mrna
Orig protein idgnl|cribi|Naga_100008g98.7860
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1051261..1052037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g98gene2606Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2725rna2725-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27968.1cds2717Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2725 ID=rna2725|Name=rna2725|organism=Nannochloropsis gaditana|type=mRNA|length=614bp
TGTGACAGGGTACAATGTCTACGAAGGCTAGAAGTCTCGCGAGGAAAACG
CTTTTCCTTTCATTACGTGAACGTGCTTGTGCAGGACTCAGGCAATGTAG
TGCTGCCTACACAAAATCGCTAGGAACACCGATATCCCTTCTTTCGGGTC
CAATTCAAGCCGCAAACAAGAGAAAACAAACGGTCTTCCCCCAATACCAG
CGATGTACCTACCTGGGAAATTCCTCTCCTAATCCTGAAAGCTGCTATTC
TTCTGAACGCACGCAATTAACAAACCATAAGAAGCGTGCAAGGGATGTTT
CCACGAAGGAGTGTCCTACACAGGACAACCTTGATGAGCACCAAAATCAG
CCCCCAGCGATTGATAATAGCGGCATAATAGAAGAGGGAGAGGAAGAGCA
CCGGCCGCCCACTGTGGCTGTGAAGGGATCGCAGATGAAGGGTGGGAACG
TCGTGTGGAGAGCGTCGAGGCATCAATTGGCGGCATGCCACGCGGCAGTC
GAGGAGCAAATGAGTGCTAACGAGAAATCGCACACTGCTGCTACGGAAAA
CAAAAGCTTGCATTCTCATGCTCAGTTCAAATCCTTAGGTGTCATAGAAC
CGGACCGGAAGTGA
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protein sequence of rna2725

>rna2725-protein ID=rna2725-protein|Name=rna2725|organism=Nannochloropsis gaditana|type=polypeptide|length=258bp
MITNYTLPALAAGLRDREETLQFCARLLEDGNLEQLERVLHPYQAELITR
RRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNV
NGVASVLFERRSPFVRSFKSQVCFPGGMVEESLDVNIIETSLREMEEEIG
FPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTEKELSPNPKEVA
ECFTIPLATLLDVEHWNREEEKGTVVFVGGPHVIWGLTAHLLDIFLKDIL
MRYKVQVQ
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mRNA from alignment at CM002459.1:1051261..1052037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2725 ID=rna2725|Name=rna2725|organism=Nannochloropsis gaditana|type=mRNA|length=777bp|location=Sequence derived from alignment at CM002459.1:1051261..1052037+ (Nannochloropsis gaditana)
ATGATCACCAACTACACACTCCCGGCCCTGGCCGCTGGTCTTCGGGACAG
GGAAGAAACGTTGCAGTTCTGCGCGCGACTATTGGAGGACGGCAACCTGG
AGCAATTAGAGcgggtcctccacccctaccAAGCTGAACTCATCACCCGC
CGTCGCCGGAAAACCCGCAGCTTGGATTTGGCAGGGGGGCTGACGTCGAA
GCACCTGAACATGTTGCGGAAATACTTGCAGCGATCCCCGCGCCAGCTGA
CCCGCGCGGTCTCCCTGCGCGCGTCGGTGGTGATTCCACTCTGCAATGTG
AACGGGGTGGCCTCCGTGCTCTTCGAACGCCGCTCTCCCTTCGTCCGCTC
CTTCAAGAGCCAAGTGTGTTTCCCaggggggatggtggaagaGTCCTTGG
ACGTGAACATCATCGAAACATCCCTtcgagagatggaggaagagatcggG
TTCCCCGCCCGGTCGGTGGACGTGCTGGGCGTCTTGCGCTGTGACTGGTC
CGAGGTGCACAAGATCACGGGCATAGGGGTCACGCCCGTGGTAGGCTTTC
TCGGTGATctgacggagaaggagctgtCTCCAAACCCCAAGGAGGTCGCG
GAGTGTTTCACGATTCCTCTGGCCACGCTCCTGGACGTGGAGCACTGGAa
ccgagaagaggagaaaggcactGTGGTCTTTGTAGGAGGGCCCCACGTGA
TCTGGGGGCTGACCGCCCACTTGCTGGATATTTTTTTGAAGGACATTTTG
ATGCGGTACAAAGTGCAAGTGCAATAG
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Coding sequence (CDS) from alignment at CM002459.1:1051261..1052037+

>rna2725 ID=rna2725|Name=rna2725|organism=Nannochloropsis gaditana|type=CDS|length=777bp|location=Sequence derived from alignment at CM002459.1:1051261..1052037+ (Nannochloropsis gaditana)
ATGATCACCAACTACACACTCCCGGCCCTGGCCGCTGGTCTTCGGGACAG
GGAAGAAACGTTGCAGTTCTGCGCGCGACTATTGGAGGACGGCAACCTGG
AGCAATTAGAGcgggtcctccacccctaccAAGCTGAACTCATCACCCGC
CGTCGCCGGAAAACCCGCAGCTTGGATTTGGCAGGGGGGCTGACGTCGAA
GCACCTGAACATGTTGCGGAAATACTTGCAGCGATCCCCGCGCCAGCTGA
CCCGCGCGGTCTCCCTGCGCGCGTCGGTGGTGATTCCACTCTGCAATGTG
AACGGGGTGGCCTCCGTGCTCTTCGAACGCCGCTCTCCCTTCGTCCGCTC
CTTCAAGAGCCAAGTGTGTTTCCCaggggggatggtggaagaGTCCTTGG
ACGTGAACATCATCGAAACATCCCTtcgagagatggaggaagagatcggG
TTCCCCGCCCGGTCGGTGGACGTGCTGGGCGTCTTGCGCTGTGACTGGTC
CGAGGTGCACAAGATCACGGGCATAGGGGTCACGCCCGTGGTAGGCTTTC
TCGGTGATctgacggagaaggagctgtCTCCAAACCCCAAGGAGGTCGCG
GAGTGTTTCACGATTCCTCTGGCCACGCTCCTGGACGTGGAGCACTGGAa
ccgagaagaggagaaaggcactGTGGTCTTTGTAGGAGGGCCCCACGTGA
TCTGGGGGCTGACCGCCCACTTGCTGGATATTTTTTTGAAGGACATTTTG
ATGCGGTACAAAGTGCAAGTGCAATAG
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Synonyms
Publications