rna2724, rna2724 (mRNA) Nannochloropsis gaditana

Overview
Namerna2724
Unique Namerna2724
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1326
Alignment locationCM002459.1:1050372..1051089 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g97.7818.mrna
Orig protein idgnl|cribi|Naga_100008g97.7818
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1050372..1051089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g97gene2605Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2724rna2724-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27926.1cds2716Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2724 ID=rna2724|Name=rna2724|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp
TAAAAATGTGGTTTTTGAAAAATCAAGCCCCACTTTCTCTCAACTTGTGA
ATCTGGTTGATTGATAGATAGAATCAGCCAACTGATTTGACTCATGAGTG
GATGAAGAAATTACCTTCTTATTAGATTGCCATAAAAACCCGATTTGTCT
CTTGTTATTCCCTTTGGCGTTACACAGAACATGCTGACTCCTCTGCACTG
GATCTGGAATGGACCTCTGGCCTTAGGATGGGTCACTTCATCGGCAATAG
TATTTCCAATTTTGCGGAAAGTGGGTCTTGTTCCGGAGGCGAACAAGCTT
GACTTCATCGCAAACGACATGCGGGGTAAGATTGTAATTGTCACGGGCAG
TAACACAGGCATTGGCAGAGCTACCGCCCTTAACATATGTAAAATGGGCG
CTACGGTGATTTTGGCCTGTCGGTCCATGGAACGGGCCAAGGCTGCACGT
GATGAGATGCTTGAAGAACTCCACAGCCTGGATGCGGGGCACCGCTTTGA
CTTCCCCTTCGCGAGGAAAGGCACCCTCGTTTGCATGCGGTTGGACTTGG
GAAGCTTCGCATCCATCAAAACCTTTGCAGAGGACTTTCTGGGGCGATAT
AAGCGGCTGGATGCATTAGTCCTGAATGCTGGGTTGGCCAACGGCTCCGG
ACGCACCAAAGAGGGATTCGAGATCATGTTCGGCACCAACTACCTCGGCC
ACTTTTACCTGACCAAGCTTTTGATGGATGTTGTAAAGGCTACTCCTGAC
TCCCGGATTGTCAGTGTATCCTCGCTCATGCACGAGTTCGGGTGTTTGGA
TTGGCAAGGAAGCTTGAGCGGGAATTATCGCGCTTTGAAAGACCGCATTT
TCTCCAGCCGCTACAACGATTCCAAGCTGGCACTCGTCCTCATGACACTG
GAATTACGACATCGCTTGAAAGGCACGTCCGTCCGAGCAATAGCTGTCTC
TCCTGGTGCTGTTGCCAGTGATATATGGCGTAGTTTCCCACTCTGGTACA
GGCGCTTGGTGCTCGACCCAGTTATGTCCCTGGCCTTTCTTTCCAATGAG
CAAGGAAGCATACCCAGCGTTTACGCCGCAACCCATTCCAATGTCTCCGA
CGAGGATGAAGACGACGAGACGAATGTGCCGTATTTTCATCCGTATTGGT
CACCGTCCCCCTCTTTCCTGATGCCCTGGGAGGTAATGGGCCCCTTCATA
GGGTTCACGCGAGCGCGACCCCGCCTGCCGCGAAATGCGCGAGCTGTGGC
CAAGGAACTATGGTATGAGAGCGAGAAGCAAGTGATACAACACACAAAAA
TATGATGAATGCTGGTATTTTATGCA
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protein sequence of rna2724

>rna2724-protein ID=rna2724-protein|Name=rna2724|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MSTKARSLARKTLFLSLRERACAGLRQCSAAYTKSLGTPISLLSGPIQAA
NKRKQTVFPQYQRCTYLGNSSPNPESCYSSERTQLTNHKKRARDVSTKEC
PTQDNLDEHQNQPPAIDNSGIIEEGEEEHRPPTVAVKGSQMKGGNVVWRA
SRHQLAACHAAVEEQMSANEKSHTAATENKSLHSHAQFKSLGVIEPDRK
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mRNA from alignment at CM002459.1:1050372..1051089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2724 ID=rna2724|Name=rna2724|organism=Nannochloropsis gaditana|type=mRNA|length=718bp|location=Sequence derived from alignment at CM002459.1:1050372..1051089+ (Nannochloropsis gaditana)
TGTGACAGGGTACAATGTCTACGAAGGCTAGAAGTCTCGCGAGGAAAacg
cttttcctttcattaCGTGAACGTGCTTGTGCAGGACTCAGGCAATGTAG
TGCTGCCTACACAAAATCGCTAGGAACACCGATATCCCTTCTTTCGGGTC
CAATTCAAGCCGCAAACAAGAGAAAACAAACGGTCTTCCCCCAATACCAG
CGATGTACCTACCTGGGAAATTCCTCTCCTAATCCTGAAAGCTGCTATTC
TTCTGAACGCACGCAATTAACAAACCATAAGAAGCGTGCAAGGGATGTTT
CCACGAAGGAGTGTCCTACACAGGACAACCTTGATGAGCACCAAAATCAG
CCCCCAGCGATTGATAATAGCGGCATaatagaagagggagaggaagagca
ccGGCCGCCCACTGTGGCTGTGAAGGGATCGCAGATGAAGGGTGGGAACG
TCGTGTGGAGAGCGTCGAGGCATCAATTGGCGGCATGCCACGCGGCAGTC
GAGGAGCAAATGAGTGCTAACGAGAAATCGCACACTGCTGCTACGGAAAA
CAAAAGCTTGCATTCTCATGCTCAGTTCAAATCCTTAGGTGTCATAGAAC
CGGTACGTTTCTTAAAAAAACCTTAGGTGTCGTAgaaccggggggggggg
gcctgTCTTGGGAATGTACTTCTTCCTTTCACGGTCGTGTGATGCTCTCC
CTTCAGGACCGGAAGTGA
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Coding sequence (CDS) from alignment at CM002459.1:1050372..1051089+

>rna2724 ID=rna2724|Name=rna2724|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at CM002459.1:1050372..1051089+ (Nannochloropsis gaditana)
ATGTCTACGAAGGCTAGAAGTCTCGCGAGGAAAacgcttttcctttcatt
aCGTGAACGTGCTTGTGCAGGACTCAGGCAATGTAGTGCTGCCTACACAA
AATCGCTAGGAACACCGATATCCCTTCTTTCGGGTCCAATTCAAGCCGCA
AACAAGAGAAAACAAACGGTCTTCCCCCAATACCAGCGATGTACCTACCT
GGGAAATTCCTCTCCTAATCCTGAAAGCTGCTATTCTTCTGAACGCACGC
AATTAACAAACCATAAGAAGCGTGCAAGGGATGTTTCCACGAAGGAGTGT
CCTACACAGGACAACCTTGATGAGCACCAAAATCAGCCCCCAGCGATTGA
TAATAGCGGCATaatagaagagggagaggaagagcaccGGCCGCCCACTG
TGGCTGTGAAGGGATCGCAGATGAAGGGTGGGAACGTCGTGTGGAGAGCG
TCGAGGCATCAATTGGCGGCATGCCACGCGGCAGTCGAGGAGCAAATGAG
TGCTAACGAGAAATCGCACACTGCTGCTACGGAAAACAAAAGCTTGCATT
CTCATGCTCAGTTCAAATCCTTAGGTGTCATAGAACCGGACCGGAAGTGA
ATGTCTACGAAGGCTAGAAGTCTCGCGAGGAAAacgcttttcctttcatt
aCGTGAACGTGCTTGTGCAGGACTCAGGCAATGTAGTGCTGCCTACACAA
AATCGCTAGGAACACCGATATCCCTTCTTTCGGGTCCAATTCAAGCCGCA
AACAAGAGAAAACAAACGGTCTTCCCCCAATACCAGCGATGTACCTACCT
GGGAAATTCCTCTCCTAATCCTGAAAGCTGCTATTCTTCTGAACGCACGC
AATTAACAAACCATAAGAAGCGTGCAAGGGATGTTTCCACGAAGGAGTGT
CCTACACAGGACAACCTTGATGAGCACCAAAATCAGCCCCCAGCGATTGA
TAATAGCGGCATaatagaagagggagaggaagagcaccGGCCGCCCACTG
TGGCTGTGAAGGGATCGCAGATGAAGGGTGGGAACGTCGTGTGGAGAGCG
TCGAGGCATCAATTGGCGGCATGCCACGCGGCAGTCGAGGAGCAAATGAG
TGCTAACGAGAAATCGCACACTGCTGCTACGGAAAACAAAAGCTTGCATT
CTCATGCTCAGTTCAAATCCTTAGGTGTCATAGAACCGGACCGGAAGTGA
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Synonyms
Publications