EWM27926.1, cds2716 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27926.1
Unique Name	cds2716
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:1050386..1050973 +
Alignment location	CM002459.1:1051078..1051089 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27926.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100008g97.7818.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1050386..1050973 +
CM002459.1	supercontig	CM002459.1:1051078..1051089 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM27926.1 vs. NCBI_GenBank
Match: gi|585110267|gb|EWM27926.1| (hypothetical protein Naga_100008g97 [Nannochloropsis gaditana])

HSP 1 Score: 416.001 bits (1068), Expect = 2.566e-147
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query:    1 MSTKARSLARKTLFLSLRERACAGLRQCSAAYTKSLGTPISLLSGPIQAANKRKQTVFPQYQRCTYLGNSSPNPESCYSSERTQLTNHKKRARDVSTKECPTQDNLDEHQNQPPAIDNSGIIEEGEEEHRPPTVAVKGSQMKGGNVVWRASRHQLAACHAAVEEQMSANEKSHTAATENKSLHSHAQFKSLGVIEPDRK 199
            MSTKARSLARKTLFLSLRERACAGLRQCSAAYTKSLGTPISLLSGPIQAANKRKQTVFPQYQRCTYLGNSSPNPESCYSSERTQLTNHKKRARDVSTKECPTQDNLDEHQNQPPAIDNSGIIEEGEEEHRPPTVAVKGSQMKGGNVVWRASRHQLAACHAAVEEQMSANEKSHTAATENKSLHSHAQFKSLGVIEPDRK
Sbjct:    1 MSTKARSLARKTLFLSLRERACAGLRQCSAAYTKSLGTPISLLSGPIQAANKRKQTVFPQYQRCTYLGNSSPNPESCYSSERTQLTNHKKRARDVSTKECPTQDNLDEHQNQPPAIDNSGIIEEGEEEHRPPTVAVKGSQMKGGNVVWRASRHQLAACHAAVEEQMSANEKSHTAATENKSLHSHAQFKSLGVIEPDRK 199

The following BLAST results are available for this feature:

BLAST of EWM27926.1 vs. NCBI_GenBank

BLAST of EWM27926.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110267\|gb\|EWM27926.1\|	2.566e-147	100.00	hypothetical protein Naga_100008g97 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2724	rna2724	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications