rna2723, rna2723 (mRNA) Nannochloropsis gaditana

Overview
Namerna2723
Unique Namerna2723
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2038
Alignment locationCM002459.1:1048693..1050018 +

Link to JBrowse

Properties
Property NameValue
Productdehydrogenase reductase sdr family member 13 precursor
Orig transcript idgnl|cribi|Naga_100008g96.7935.mrna
Orig protein idgnl|cribi|Naga_100008g96.7935
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1048693..1050018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g96gene2604Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2723rna2723-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28043.1cds2715Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2723 ID=rna2723|Name=rna2723|organism=Nannochloropsis gaditana|type=mRNA|length=2038bp
GCCGCTGCAATGCATGATGAGTATGCCAGGTCATGCATTGTTTGTGCTCT
GACCTACACGTGGTCGGAACGCAGGTCTGACGGCGCGGTCCGCCAATGGT
TTCTTATTTAAACTCGCTATGGGCTTTCGCCTCGACGGTCAGCAACCCCA
TTCTGTCCATGTCTCACCATGCCCACACACACCTGCACACGCACATACAG
TTACGCCACCATCCGTGCATTAGTTTCATCATGAGCAACGGTAACGTTCA
TAATGGCAGCGCACCGGAGGCCGAGTATACACCAAAGAACATCCTAGTAA
CTGGAGGGGCCGGTTTCATCGCCTCTCACGTCGTGCTACTTCTTGTCAAG
AAGTTTCCCAAGTATAAAATCGTCAACCTGGACCGACTGGACTACTGCTC
CTGTCTGGAGAATCTGGACGAAATCAAGTACTACAAAAACTACAAGTTTG
TCAAGGGCAACATCTGTTCCTCTGACCTCGTGAACTACGTACTTGAAGAG
GAAGAGATTGACACGATCATGCACTTTGCGGCCCAGACCCACGTGGACAA
CAGCTTCGGCAACTCCTTCTCCTTCACGCAGAACAACATTCTGGGGACGC
ACGTCCTCTTGGAGAGCGCGAAAGTCCACAACATCAAGCGCTTTATCCAC
GTGTCCACGGACGAAGTGTACGGGGAGGGAGCGGCGGACCAAGAACCCAT
GTTCGAGGACCAAGTCTTAGAGCCCACGAATCCTTACGCCGCGACCAAGG
CGGGCGCCGAGTTTATTGCCAAGTCCTACTCTCGCTCTTTCAACCTCCCA
TTGATCATCACGCGCGGAAATAATGTCTACGGTCCCCACCAGTACCCGGA
GAAACTCATCCCCAAGTTTGTCAACTTGCTGATGCGTGATAGGCCGGTGA
CGCTGCACGGGAACGGCCTCAATACCCGCAACTTCCTCTACGTGGAGGAC
GTGGCGCGTGCGTTCGAAGTAATCCTGCACAGGGGTGTAACGGGCAAGAT
CTACAACATCGGGGGCACCCACGAGAAAGCGAACATCGAGGTCGCCAAGG
ACCTGATCCGGCTAATGGGCCACGGGAAGGAGGAGGAGAAGATGCTGCAG
TTCGTCGAAGATCGAGCCTTCAACGATTTGCGATACACGGTGAACAGCGA
AGCCCTCAAGCAGTTGGGCTGGCGGGAGATTGTGTCGTGGGAGGACGGAC
TGCACAAAACGGTGGAGTGGTACAAGCAGCACACGGGCCGGTATGGGAAC
ATTGACTGTGCCCTAGTGGCCCATCCCCGCTCTGGAGCGGTACACGAGTT
TTCGTAGGCGAGACGACATCGGAAAGAGCTTAGACGTCCGAGAAGATGAG
AAGGACTTGGTGTCGAGGGTATGTGTCTGTGTATAATATAGGAGGACCTT
GCTTGGTCCGTGCCTGTTCCACCGAGATGCAAGGGAGAAAAGAGGCTGAC
GGTGGTCAAGGTGGCGTGAAGCCATGAATGAGAAGACATAGTGAATTAAG
GCCAGAGGTATGTCTCTCGACCGCACGTGCGACCTGGGGGTAGTATTTCA
TGACATGGGGTTTATTTGGTGGGAATGTATCATGCACCCATTTATCGGTG
TAGCGGAGTAGTAATCTAAGACGGAAGCGGCCAAAGTACCTGTGTTCAAG
CCCATGCCAAAATATATTGGTTCAACGCGTCCACAAGATCTCTTCCAGTT
AGTTCTACCTCGTGGCGCATAATATTTTGATGGATAAGATTTAGACGGTT
TCATGCCAAGAGGAACGCCATAGCGACGAACGGAAGCATAAAGTTTTCAG
CCGAAAGCAATGAAAAGAGGAGATATGTAGGAGGTTAGTGAGAAAATTTT
ATTGGGACGGTTAGCGCACCGTCCCATGTATGACGGAAGATGGTATCGAT
ATTCAAGTTTCAAAGAACAATGAAAATTAGGCTCTTCAGAGGAACATATG
CCCCGATTTCGGGTAATTCAGGGCGCTTTAGCGGCAAACTACGGTTTGTC
TTACCTAGTTTCGACGGTAGCCTCGCACTTGCTTTATT
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protein sequence of rna2723

>rna2723-protein ID=rna2723-protein|Name=rna2723|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MLTPLHWIWNGPLALGWVTSSAIVFPILRKVGLVPEANKLDFIANDMRGK
IVIVTGSNTGIGRATALNICKMGATVILACRSMERAKAARDEMLEELHSL
DAGHRFDFPFARKGTLVCMRLDLGSFASIKTFAEDFLGRYKRLDALVLNA
GLANGSGRTKEGFEIMFGTNYLGHFYLTKLLMDVVKATPDSRIVSVSSLM
HEFGCLDWQGSLSGNYRALKDRIFSSRYNDSKLALVLMTLELRHRLKGTS
VRAIAVSPGAVASDIWRSFPLWYRRLVLDPVMSLAFLSNEQGSIPSVYAA
THSNVSDEDEDDETNVPYFHPYWSPSPSFLMPWEVMGPFIGFTRARPRLP
RNARAVAKELWYESEKQVIQHTKI
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mRNA from alignment at CM002459.1:1048693..1050018+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2723 ID=rna2723|Name=rna2723|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp|location=Sequence derived from alignment at CM002459.1:1048693..1050018+ (Nannochloropsis gaditana)
TAAAAATGTGGTTTTTGAAAAATCAAGCCCCACTTTCTCTCAACTTGTGA
ATCTGGTTGATTGATAGATAGAATCAGCCAACTGATTTGACTCATGAGTG
GATGAAGAAATTACCTTCTTATTAGATTGCCATAAAAACCCGATTTGTCT
CTTGTTATTCCCTTTGGCGTTACACAGAACATGCTGACTCCTCTGCACTG
GATCTGGAATGGACCTCTGGCCTTAGGATGGGTCACTTCATCGGCAATAG
TATTTCCAATTTTGCGGAAAGTGGGTCTTGTTCCGGAGGCGAACAAGCTT
GACTTCATCGCAAACGACATGCGGGGTAAGATTGTAATTGTCACGGGCAG
TAACACAGGCATTGGCAGAGCTACCGCCCTTAACATATGTAAAATGGGCG
CTACGGTGATTTTGGCCTGTCGGTCCATGGAACGGGCCAAGGCTGCACGT
GATGAGATGCTTGAAGAACTCCACAGCCTGGATGCGGGGCACCGCTTTGA
CTTCCCCTTCGCGAGGAAAGGCACCCTCGTTTGCATGCGGTTGGACTTGG
GAAGCTTCGCATCCATCAAAACCTTTGCAGAGGACTTTCTGGGGCGATAT
AAGCGGCTGGATGCATTAGTCCTGAATGCTGGGTTGGCCAACGGCTCCGG
ACGCACCAAAGAGGGATTCGAGATCATGTTCGGCACCAACTACCTCGGCC
ACTTTTACCTGACCAAGCTTTTGATGGATGTTGTAAAGGCTACTCCTGAC
TCCCGGATTGTCAGTGTATCCTCGCTCATGCACGAGTTCGGGTGTTTGGA
TTGGCAAGGAAGCTTGAGCGGGAATTATCGCGCTTTGAAAGACCGCATTT
TCTCCAGCCGCTACAACGATTCCAAGCTGGCACTCGTCCTCATGACACTG
GAATTACGACATCGCTTGAAAGGCACGTCCGTCCGAGCAATAGCTGTCTC
TCCTGGTGCTGTTGCCAGTGATATATGGCGTAGTTTCCCACTCTGGTACA
GGCGCTTGGTGCTCGACCCAGTTATGTCCCTggcctttctttccaatgAG
CAAGGAAGCATACCCAGCGTTTACGCCGCAACCCATTCCAATGTCtccga
cgaggatgaagacgacgagACGAATGTGCCGTATTTTCATCCGTATTGGT
CaccgtccccctctttcctgatGCCCTGGGAGGTAATGGGCCCCTTCATA
GGGTTCACGCGAGCGCGACCCCGCCTGCCGCGAAATGCGCGAGCTGTGGC
CAAGGAACTATGGTATGAGAGCGAGAAGCAAGTGATACAACACACAAAAA
TATGATGAATGCTGGTATTTTATGCA
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Coding sequence (CDS) from alignment at CM002459.1:1048693..1050018+

>rna2723 ID=rna2723|Name=rna2723|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002459.1:1048693..1050018+ (Nannochloropsis gaditana)
ATGCTGACTCCTCTGCACTGGATCTGGAATGGACCTCTGGCCTTAGGATG
GGTCACTTCATCGGCAATAGTATTTCCAATTTTGCGGAAAGTGGGTCTTG
TTCCGGAGGCGAACAAGCTTGACTTCATCGCAAACGACATGCGGGGTAAG
ATTGTAATTGTCACGGGCAGTAACACAGGCATTGGCAGAGCTACCGCCCT
TAACATATGTAAAATGGGCGCTACGGTGATTTTGGCCTGTCGGTCCATGG
AACGGGCCAAGGCTGCACGTGATGAGATGCTTGAAGAACTCCACAGCCTG
GATGCGGGGCACCGCTTTGACTTCCCCTTCGCGAGGAAAGGCACCCTCGT
TTGCATGCGGTTGGACTTGGGAAGCTTCGCATCCATCAAAACCTTTGCAG
AGGACTTTCTGGGGCGATATAAGCGGCTGGATGCATTAGTCCTGAATGCT
GGGTTGGCCAACGGCTCCGGACGCACCAAAGAGGGATTCGAGATCATGTT
CGGCACCAACTACCTCGGCCACTTTTACCTGACCAAGCTTTTGATGGATG
TTGTAAAGGCTACTCCTGACTCCCGGATTGTCAGTGTATCCTCGCTCATG
CACGAGTTCGGGTGTTTGGATTGGCAAGGAAGCTTGAGCGGGAATTATCG
CGCTTTGAAAGACCGCATTTTCTCCAGCCGCTACAACGATTCCAAGCTGG
CACTCGTCCTCATGACACTGGAATTACGACATCGCTTGAAAGGCACGTCC
GTCCGAGCAATAGCTGTCTCTCCTGGTGCTGTTGCCAGTGATATATGGCG
TAGTTTCCCACTCTGGTACAGGCGCTTGGTGCTCGACCCAGTTATGTCCC
TggcctttctttccaatgAGCAAGGAAGCATACCCAGCGTTTACGCCGCA
ACCCATTCCAATGTCtccgacgaggatgaagacgacgagACGAATGTGCC
GTATTTTCATCCGTATTGGTCaccgtccccctctttcctgatGCCCTGGG
AGGTAATGGGCCCCTTCATAGGGTTCACGCGAGCGCGACCCCGCCTGCCG
CGAAATGCGCGAGCTGTGGCCAAGGAACTATGGTATGAGAGCGAGAAGCA
AGTGATACAACACACAAAAATATGA
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Synonyms
Publications