rna2714, rna2714 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2714
Unique Name	rna2714
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2782
Alignment location	CM002459.1:1025987..1027805 -

Link to JBrowse

Properties


Property Name	Value
Product	rossmann-fold nad -binding domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100008g85.7931.mrna
Orig protein id	gnl\|cribi\|Naga_100008g85.7931
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:1025987..1027805 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g85	gene2595	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28039.1	cds2706	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2714	rna2714-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:1025987..1027805-
coding sequence from alignment at CM002459.1:1025987..1027805-

mRNA sequence

>rna2714 ID=rna2714|Name=rna2714|organism=Nannochloropsis gaditana|type=mRNA|length=2782bp
GTCGTTGTGAGCAACCTTTTAAAGCTACATAGTCAGAAGCAAGCGCGTGC
TAGCAATAGCTGGCCATGTGCCATGAAAGAATGGTTTTCTCCCCCTAGAA
GCGCTCGCTCTTCCTTGTTTGCCGCAAGGAGATGACTGATCTTGCAATGA
TGTATTGGATTTCTTACTTTCTTTTGTATATTTATCACACTAGGTGCAGG
GAACGTGGGAACCTTTGACGAAACCAAATTGAAATGGACAACCAGACAGC
AGAAGTTCAAGCTCCAGAAGAAGAAAGCTGTCGCGAGCCCCATCCCCCTC
TCTTTTGGCCACAGTCCTCGGCATTTAGCATGATGCGAACGATCGCGCAG
GGTGGTAAGCAACGTCAACAGTCTGCGGCGCCAAAGCCACCGTTGTTGAC
CCCCGCGTCGCGGCAGCATTCTCTACGGATGAGCGCCGAGGACCATCATG
GTCTCTCTGCTTGGGAGAAATGGACAAGGTTCCGCCGATTCCCGTTCAAG
CTCATTTTGCATGCACTCCTCTTGATTGCCGTTACGTCGCAGCTTCTTTT
ATTGAATCGGAACGATGCCTCCTACCAGAGGGCTATGCAACGCACGTTTG
CCTGTTTCTTCATGCCGAAGGGGGTTAAAGACGGCATGGGCCGACGCTTG
CTCTTCACCAATCAAGGCTTCTTGATGAGCCTAGCCGAGGCCAGCCAAAA
TTACTTTCGACTGAATGAGCTGAGTGCCGTCTCTTTTTTCTACCGGAACG
AACCTCACGGTCCTAGGGCCGTGGGCACCGCCATCGGGGGGAGGCCTTCC
AACCTAAACCTTACACCGACACCATTCAAGATGCGTCTCGAGGTTGCAGG
GAATTACGACCCTCCGGCCCCGTTTCCATTGGATCATTGGGTGCGGGACC
CCGTGGACTTGGGGCCTTTTGCAGCAGCCATTGCGGAAGATCGGGACAAC
GTGACCGCTGGCGGGCAAAAGACAGTGCCCCCGGAACTCGCACGTTTGCT
CGACTCCCTGATGAGTGTCACGCTCGACATGGTTCTCTGCAATTCCTTGG
AAGGACGGCAACACGGGGCCTGGGAGGAGCGTTGCTTCTGCTGGCATGTC
AGCACCCTATACAACTTTCGACAGGGGGGGAACGCCCATTTGACCCTCTC
CCAACACATCATCTCTCCTTGCTCTTACCAAACCTCCATCGTCCGCTACC
TTTCCTCGCGCGTGGGCATCTTGAACTTCATTACTGCGCTCCTTGCCTCC
ACGTACTTGGTCCTGATATTCAAGTCCCTGCACGCATCAATCGCGGTCTA
TCGCCGAGTCAGGTTGGCCTATCCGCTTTCGCACCACCCCTTGCGACGGC
GCTACCCCACGTGGGCCCACGTCCCTTGGCGACTTAAACGCAAATTTTTC
TCTTTCTACCTGCTGCTCATCGGCCTCGGCACCCTCCTATCCCTCGTCTC
CGTCCTGCTCTCTTCCTACTATACCCGAACCTATTCCCCTGCACTGTGGT
CCCACAAGCTCTGCGCCGGCATCGGTGCCCTTTGCCTCTGGATCGGCGTT
CTGCGTTTTTTCCAACCATATCCACACCTTTATAGCCTTATTCCTACGCT
TGATGCAGCCGCACCCCGCCTTATCCCCTTCCTGGCAGGGGTGTTTCCCA
TCTTTTTTGCATTTGCTCTCCTTGGAGTGAGCTTGTTCGGCCGAGACGTG
CTGCTTTTCGCCTCCCTCTCCCACACTTTGAGCAGTCTGTGGAGCCTGAT
GAACGGTGACAGCCTCTACAACATTATCAATGCCAGCCGTGCCACCCATC
CTGTGCTTGCTAATTTGTATATGTATACATACATCACCCTCGCTATTTAC
GTCGTGATCAACATCATAATTGCCACCACGGAGGAAGCTTTTTTCCATTC
CCGACACGTGCAGCGGCTCGCTCATCGCTTTCTGAAACGATCTTTGCGGC
AATTGGATGAGATGAGGGAGTGTGAAGAAGAGGAGAGAGGTGTGTGCTCT
AAAGGAGCGTCAATGGATGCACAGTCCGAGGAGGAAGAGGCAGAGGAATG
GGAAGAGGAGGAGGATGGGGACAAGGAAGGAGGCGTGAACACTGTCGGAG
GTGGGGAAGTTGTATCCTCAGGGGTATCAACAGCAGGATCCTCAACATTT
CCAGAGATACAGCGAGGGCGGCAACGGTGGACGGAAACAGAAAGAGAGTG
GGGTATTGAGGAGGAGGATCATGAATGTGGGTCGGAGCGAAGGAGTGAAA
AACCGAGGCGCGGAAGAAGTGACACCCTGTTCCTCGTATATGCTCTTGAG
CGGCAGCAGGAGGAGGTGTTTGAGGCAATTCTTCGATTGCTGGTCAAGGA
TTACAAAATAGAAGGTCGGGATGAAGGGAGGGAGGGGTAAGGGCCTGAAC
GGGGTGGGAGCAAGGGTAGGCAATGCATGTTGCCTTAGCGAGTAGAGTTT
TAAATGATTGTTTGCTGGTCGTATTTACTGAATAAAGTCAAGTATCATGC
AGCGGAGCGCATCGGATAGACTACTTCACAGTAGCAAGTAGGATACAAAA
AGTTGCCTTATCTAGGTGTTCGGGGGGGCTCAGAATGCTTTTGTACGGTA
GTGAAAGAACACTTGTAAATTGCCAAGTAAAAATGAGTGTGTAGAAAATT
TTTAAGAAATGCCATGTTTGCTTGTGTCGAGACATGCAGTCCTGCGCCCG
GATGATGTGTACAAAGATAGGAGTTTAGACCTGACCACTGATCTATCACG
AAAGAAGGAAAAGAAATAAGCATGCCCATTCC

protein sequence of rna2714

>rna2714-protein ID=rna2714-protein|Name=rna2714|organism=Nannochloropsis gaditana|type=polypeptide|length=384bp
MPCPKRRRGLLRRSAALSDKFSVPGCFLLFLASLHLMLTRSTVGVFAFVL
ATPHRSLAKVHSLILDSSISSTVRHTCMDMQASTQEKDLLVVGMGTLGRF
LGQSWRESFGNDAIIYGETSTDNRHDDLRSIGVKPFMRSERVGTLAEQGH
EAFSHVVFCVPPSKNQDYVEEVKEALKLWTGKGGFVFTSSGGVYAEDEGG
TVNESAALSPNPRMSKILAAEEAVIAGGGTVLRLAGLYTQTRGPHTFWLS
KGEVGATEEGLINLLHYEDAARATMAALLHHHEKADQNFGRVLLISDNQP
LTRKQICEAAVQSPFFRGKYEMPIFKRPSDTPRSLGKVYDTSASRAALGG
WTPKYPSFAVFMASSRPSEAEAAKSGHTTNAAVR

mRNA from alignment at CM002459.1:1025987..1027805-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2714 ID=rna2714|Name=rna2714|organism=Nannochloropsis gaditana|type=mRNA|length=1819bp|location=Sequence derived from alignment at CM002459.1:1025987..1027805- (Nannochloropsis gaditana)
GCGATCCCCGGGCTTGCTATCCGCTTGCCTTTACCTCTCTTTACTGGCAT
TCTACCGCGAGAAGCGAAAAGGTAATTCAGTTTGAGTGTCCATGAGAAAC
ATAATCTCATTTATGGGTTTGCATGAGAGCTTCAATCTTCACGGATCTCT
TGCTTGATAGTTGTGAGAAGGCAAGGCGTGAGGCAATAGAGGTAGGGAGC
CTAGACATCTTGTGACTCTTATCGTCTTTATTTACATTATATTCCTCGGA
AAAAATAGGAACTAAAATTGGCCAGATGCCCTGTCCTAAACGCCGGAGAG
GCCTGTTGCGACGCTCAGCAGCGCTTTCGGACAAATTTTCTGTGCCGGGT
TGTTTTTTACTATTCCTGGCAAGTCTCCACTTGATGCTTACGCGCTCCAC
TGTGGGGGTATTCGCCTTCGTGTTAGCAACGCCTCACCGGAGCCTTGCCA
AAGTCCACTCGCTCATCTTAGATTCCAGTATTTCGTCAACTGTCCGTCAC
ACTTGCATGGATATGCAAGCCAGCACGCAAGAAAAAGACCTGCTGGTAGT
TGGGATGGGGACATTAGGCCGCTTTCTTGGCCAGTCCTGGCGTGAATCGT
TCGGAAACGACGCAATTATTTACGGGGAAACCAGCACCGATAATCGACAC
GACGATCTCCGTTCGATTGGCGTGAAGCCATTCATGCGGAGCGAACGGGT
CGGGACGCTGGCGGAGCAGGGCCACGAAGCATTCTCGCACGTGGTGTTTT
GCGTCCCACCCTCCAAAAACCAGGATTACGTGGAAGAGGTGAAGGAGGCC
CTCAAGCTATGGACAGGGAAAGGTGGATTTGTTTTTACTTCCTCCGGCGG
TGTTTATGCGGAGGATGAGGGAGGAACCGTGAATGAGTCGGCCGCTCTGT
CGCCGAACCCACGCATGAGCAAGATCCTGGCGGCTGAAGAGGCCGTAATA
GCGGGGGGAGGGACGGTTCTGCGTCTTGCTGGGTTATACACGCAAACTCG
TGGCCCTCACACATTTTGGCTGAGCAAAGGAGAAGTCGGCGCTACTGAAG
AAGGCCTTATAAATTTGTTGCATTACGAAGATGCTGCACGCGCGACAATG
GCTGCCCTCCTCCATCACCACGAGAAGGCTGATCAAAATTTTGGGCGCGT
TCTTTTGATTTCAGACAACCAGCCACTGACCCGTAAGCAGATTTGCGAGG
CCGCGGTCCAATCACCTTTCTTCCGGGGGAAGTACGAGATGCCAATTTTC
AAGCGGCCGTCAGATACCCCCAGGAGCCTTGGGAAAGTCTACGACACGTC
TGCGTCGCGGGCAGCCTTGGGTGGATGGACGCCAAAATACCCTTCTTTCG
CTGTCTTCATGGCGAGTTCGAGGCCTTCAGAGGCTGAGGCGGCGAAAAGT
GGCCACACCACCAATGCGGCGGTTCGATGACGGGCGCGCGGGGACCTTGG
ATGGTGAGAAATATGTTTAATGTTTTGGAAGGCGCAATTGCATGAATTTA
GTAGACAATCGAATTACCTGAAGGAATGGGCATGCTTATTTCTTTTCCTT
CTTTCGTGATAGATCAGTGGTCAGGTCTAAACTCCTATCTTTGTACACAT
CATCCGGGCGCAGGACTGCATGTCTCGACACAAGCAAACATGGCATTTCT
TAAAAATTTTCTACACACTCATTTTTACTTGGCAATTTACAAGTGTTCTT
TCACTACCGTACAAAAGCATTCTGAGCCCCCCCGAACACCTAGATAAGGC
AACTTTTTGTATCCTACTTGCTACTGTGAAGTAGTCTATCCGATGCGCTC
CGCTGCATGATACTTGACT

Coding sequence (CDS) from alignment at CM002459.1:1025987..1027805-

>rna2714 ID=rna2714|Name=rna2714|organism=Nannochloropsis gaditana|type=CDS|length=1155bp|location=Sequence derived from alignment at CM002459.1:1025987..1027805- (Nannochloropsis gaditana)
ATGCCCTGTCCTAAACGCCGGAGAGGCCTGTTGCGACGCTCAGCAGCGCT
TTCGGACAAATTTTCTGTGCCGGGTTGTTTTTTACTATTCCTGGCAAGTC
TCCACTTGATGCTTACGCGCTCCACTGTGGGGGTATTCGCCTTCGTGTTA
GCAACGCCTCACCGGAGCCTTGCCAAAGTCCACTCGCTCATCTTAGATTC
CAGTATTTCGTCAACTGTCCGTCACACTTGCATGGATATGCAAGCCAGCA
CGCAAGAAAAAGACCTGCTGGTAGTTGGGATGGGGACATTAGGCCGCTTT
CTTGGCCAGTCCTGGCGTGAATCGTTCGGAAACGACGCAATTATTTACGG
GGAAACCAGCACCGATAATCGACACGACGATCTCCGTTCGATTGGCGTGA
AGCCATTCATGCGGAGCGAACGGGTCGGGACGCTGGCGGAGCAGGGCCAC
GAAGCATTCTCGCACGTGGTGTTTTGCGTCCCACCCTCCAAAAACCAGGA
TTACGTGGAAGAGGTGAAGGAGGCCCTCAAGCTATGGACAGGGAAAGGTG
GATTTGTTTTTACTTCCTCCGGCGGTGTTTATGCGGAGGATGAGGGAGGA
ACCGTGAATGAGTCGGCCGCTCTGTCGCCGAACCCACGCATGAGCAAGAT
CCTGGCGGCTGAAGAGGCCGTAATAGCGGGGGGAGGGACGGTTCTGCGTC
TTGCTGGGTTATACACGCAAACTCGTGGCCCTCACACATTTTGGCTGAGC
AAAGGAGAAGTCGGCGCTACTGAAGAAGGCCTTATAAATTTGTTGCATTA
CGAAGATGCTGCACGCGCGACAATGGCTGCCCTCCTCCATCACCACGAGA
AGGCTGATCAAAATTTTGGGCGCGTTCTTTTGATTTCAGACAACCAGCCA
CTGACCCGTAAGCAGATTTGCGAGGCCGCGGTCCAATCACCTTTCTTCCG
GGGGAAGTACGAGATGCCAATTTTCAAGCGGCCGTCAGATACCCCCAGGA
GCCTTGGGAAAGTCTACGACACGTCTGCGTCGCGGGCAGCCTTGGGTGGA
TGGACGCCAAAATACCCTTCTTTCGCTGTCTTCATGGCGAGTTCGAGGCC
TTCAGAGGCTGAGGCGGCGAAAAGTGGCCACACCACCAATGCGGCGGTTC
GATGA

Synonyms

Publications