rna2709, rna2709 (mRNA) Nannochloropsis gaditana

Overview
Namerna2709
Unique Namerna2709
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1043
Alignment locationCM002459.1:1014271..1015641 +

Link to JBrowse

Properties
Property NameValue
Productcell-derived factor 2 like protein
Orig transcript idgnl|cribi|Naga_100008g80.7833.mrna
Orig protein idgnl|cribi|Naga_100008g80.7833
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1014271..1015641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g80gene2591Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2709rna2709-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27941.1cds2701Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2709 ID=rna2709|Name=rna2709|organism=Nannochloropsis gaditana|type=mRNA|length=1043bp
GATCATACCATTTGTGCTCCACTCGTCGCCTTACCCGTTTATCTTCCCTT
CACGTACAACATGGAAACATGATGGCTTTCTTGAAACATCTCGAGGCGGG
CTCAAATCCAAATTCTAAATTCCACAGACAGCGATCAAACACACCTGCTA
CAAGTGAGATGAGGAGGAACATGATGCTCTCTACTGCTGCTGGCTGGCTG
CTGCTCACATTGGTCACACCCGTACTGTCGTTAGAAGATGACATCATGAC
CTTCGGCAGCGTTGTCAAACTTCAGCACGTTCCCAGCAAGTACTTTCTCC
ACAGCCATCAAATTAGTTGGGGCTCAGGCAGTGGGCAACAGTCCGTAACA
GCCCATGGAAGTGCGGATGATCGAGGAGGCTTGTGGGTTGTAGCTGAGGG
AGACAACGACCCGTTTAAAGAGGGAGGCTCCCCGGTGGCTTGCGGGACCG
CCATCCGGCTTGGACACATGGAGACCTCCAAAAACTTGCACTCGCATTTT
TTTTCATCCCCTCTTTCAAACCAGCAAGAGGTCAGCTGCTTCGGGGACGG
TGGGCGCGGGGATAGTGGGGATAATTGGGAGGTAGTATGCATGGCCCCTG
GTGCTAAATTCTGGCGAAGGGGGGACGAGGTCCGATTCAAGCACAAGGAC
ACGGGTCGATTCCTGCAGACGGAGGCCAAGCATCGGTTTACGCAGAAGAA
TTGCCCAAACTGTCCAATTGTGGGCCAACAGGAGGTCTTTTGCCACCAGA
CCGGTGGAGCGGAGACAGTGTGGAAGGCTGTTCAAGGCATCTTCATCCAC
CCTCGGAGCGACGAGGACAGCGGGCACGATGAGCTTTGATGCGGATAGGA
TGAAGCTGTCAGACAGAGTATCAATAGAACGAAAGCCGATGTAGCACGAA
GGGTGCCGTCCCGACCGGGAGAGGCCTTGAAAGTCATGATGCAACGCAGA
TCTTGAAATCAGTTGTGGTCAGGATCAATTAAAGTAAACTATACAGGGGT
GCGCATAAAAGAAAAGAAAACTAAGCCCTCAATTCTTCATATC
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protein sequence of rna2709

>rna2709-protein ID=rna2709-protein|Name=rna2709|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVA
EGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFG
DGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQ
KNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
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mRNA from alignment at CM002459.1:1014271..1015641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2709 ID=rna2709|Name=rna2709|organism=Nannochloropsis gaditana|type=mRNA|length=1371bp|location=Sequence derived from alignment at CM002459.1:1014271..1015641+ (Nannochloropsis gaditana)
CTCAAATCCAAATTCTAAATTCCACAGACAGCGATCAAACACACCTGCTA
CAAGtgagatgaggaggaacaTGATGCTCTCTACTGCTGCTGGCTGGCTG
CTGCTCACATTGGTCACACCCGTACTGTCGTTAGAAGGTATCTATTGTTT
TCGTAATTTTACGCATATATAAGTACGAAGACTTGTCATGCGAATGAATT
TTTTTTTGGCTGCGTATCATTTTTGTTCAAGTATGGGCTCCGAGTGTGGG
TCCGCTCCTCATATCACAAAAGTGTAGCCTTCTTTTTGATTGGCAGTTTA
TTGCAGTAGACCATTTGGAGTTGCCATCGAAGTCACTTCGATGTAAGAAT
CGCGAAGATTGCCCTCCGAAATGTATTTGTTTGAAGGTCATTCCATCTGG
AAAGGCGTTCAGCGGGTTTAAGTGCGGTCTCAACACTCTTCATATGTGTT
TGGAGGGGCATCTTTCTTACTCAAGGCCCGaatttttcaatttttgaTTC
ATGCATTGCTGGTGCTTTCTCGTCTCAAGCCTTTCTGTTTTCCTCGCGTT
TTCTGGCATTAACAGATGACATCATGACCTTCGGCAGCGTTGTCAAACTT
CAGCACGTTCCCAGCAAGTACTTTCTCCACAGCCATCAAATTAGTTGGGG
CTCAGGCAGTGGGCAACAGTCCGTAACAGCCCATGGAAGTGCGGATGATC
GAGGAGGCTTGTGGGTTGTAGCTGAGGGAGACAACGACCCGTTTAAAGAG
GGAGGCTCCCCGGTGGCTTGCGGGACCGCCATCCGGCTTGGACACATGGA
GACCTCCAAAAACTTGCACTcgcattttttttcatccCCTCTTTCAAACC
AGCAAGAGGTCAGCTGCTTCGGGGACGGTGGGCGCGGGGATAGTGGGGAT
AATTGGGAGGTAGTATGCATGGCCCCTGGTGCTAAATTCTGGCGAAGGGG
GGACGAGGTCCGATTCAAGCACAAGGACACGGGTCGATTCCTGCAGACGG
AGGCCAAGCATCGGTTTACGCAGAAGAATTGCCCAAACTGTCCAATTGTG
GGCCAACAGGAGGTCTTTTGCCACCAGACCGGTGGAGCGGAGACAGTGTG
GAAGGCTGTTCAAGGCATCTTCATCCACCCTCGGAGCGACGAGGACAGCG
GGCACGATGAGCTTTGATGCGGATAGGATGAAGCTGTCAGACAGAGTATC
AATAGAACGAAAGCCGATGTAGCACGAAGGGTGCCGTCCCGACCGGGAGA
GGCCTTGAAAGTCATGATGCAACGCAGATCTTGAAATCAGTTGTGGTCAG
GATCAATTAAAGTAAACTATACAGGGGTGCGCataaaagaaaagaaaact
AAGCCCTCAATTCTTCATATC
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Coding sequence (CDS) from alignment at CM002459.1:1014271..1015641+

>rna2709 ID=rna2709|Name=rna2709|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002459.1:1014271..1015641+ (Nannochloropsis gaditana)
ATGACCTTCGGCAGCGTTGTCAAACTTCAGCACGTTCCCAGCAAGTACTT
TCTCCACAGCCATCAAATTAGTTGGGGCTCAGGCAGTGGGCAACAGTCCG
TAACAGCCCATGGAAGTGCGGATGATCGAGGAGGCTTGTGGGTTGTAGCT
GAGGGAGACAACGACCCGTTTAAAGAGGGAGGCTCCCCGGTGGCTTGCGG
GACCGCCATCCGGCTTGGACACATGGAGACCTCCAAAAACTTGCACTcgc
attttttttcatccCCTCTTTCAAACCAGCAAGAGGTCAGCTGCTTCGGG
GACGGTGGGCGCGGGGATAGTGGGGATAATTGGGAGGTAGTATGCATGGC
CCCTGGTGCTAAATTCTGGCGAAGGGGGGACGAGGTCCGATTCAAGCACA
AGGACACGGGTCGATTCCTGCAGACGGAGGCCAAGCATCGGTTTACGCAG
AAGAATTGCCCAAACTGTCCAATTGTGGGCCAACAGGAGGTCTTTTGCCA
CCAGACCGGTGGAGCGGAGACAGTGTGGAAGGCTGTTCAAGGCATCTTCA
TCCACCCTCGGAGCGACGAGGACAGCGGGCACGATGAGCTTTGA
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Synonyms
Publications