EWM27941.1, cds2701 (CDS) Nannochloropsis gaditana

Overview
NameEWM27941.1
Unique Namecds2701
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1014844..1015437 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27941.1
Productcell-derived factor 2 like protein
Orig transcript idgnl|cribi|Naga_100008g80.7833.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1014844..1015437 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027005GlyclTrfase_39-like
IPR016093MIR_motif
Homology
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|585110283|gb|EWM27942.1| (cell-derived factor 2 like protein [Nannochloropsis gaditana])

HSP 1 Score: 413.69 bits (1062), Expect = 1.490e-145
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
            MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
Sbjct:   60 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 256          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|553183532|ref|XP_005853916.1| (stromal cell-derived factor 2 [Nannochloropsis gaditana CCMP526] >gi|422295144|gb|EKU22443.1| stromal cell-derived factor 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 411.379 bits (1056), Expect = 4.127e-145
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
            MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
Sbjct:   30 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 226          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|585110282|gb|EWM27941.1| (cell-derived factor 2 like protein [Nannochloropsis gaditana])

HSP 1 Score: 409.068 bits (1050), Expect = 1.575e-144
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
            MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
Sbjct:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|675206897|ref|XP_008912333.1| (hypothetical protein PPTG_16542 [Phytophthora parasitica INRA-310] >gi|566014024|gb|ETI36935.1| hypothetical protein F443_17038 [Phytophthora parasitica P1569] >gi|567951425|gb|ETK77126.1| hypothetical protein L915_16568 [Phytophthora parasitica] >gi|567980117|gb|ETL30587.1| hypothetical protein L916_16469 [Phytophthora parasitica] >gi|568009616|gb|ETL83816.1| hypothetical protein L917_16295 [Phytophthora parasitica] >gi|568039517|gb|ETM37008.1| hypothetical protein L914_16400 [Phytophthora parasitica] >gi|568087425|gb|ETN02296.1| hypothetical protein PPTG_16542 [Phytophthora parasitica INRA-310] >gi|970659428|gb|KUF97065.1| Stromal cell-derived factor 2 [Phytophthora nicotianae])

HSP 1 Score: 185.267 bits (469), Expect = 6.315e-55
Identity = 95/195 (48.72%), Postives = 121/195 (62.05%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H PS+Y LHSH+I++GSGSGQQSVTAH + +D    W+V EGD  P  + G P+ CG  IRL HM+T +NLHSH F +PLS+Q  EVS FG  G GD  D+W V C       A G       W+RG+ VR +H+ T   L T ++ RF   NCP CPI GQQEV    T    T+W A +GI++
Sbjct:   99 VTCGSSIKLVHEPSRYRLHSHEIAYGSGSGQQSVTAHMARNDVNSYWLVKEGDGAPVCDVGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRMDSWVVECQENQQCSAEGQCEDDGLWKRGELVRLRHRATNHLLTTSSRSRFDDSNCPRCPINGQQEVSGSSTRDENTLWFAGEGIYV 293          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|301111756|ref|XP_002904957.1| (stromal cell-derived factor 2 precursor [Phytophthora infestans T30-4] >gi|262095287|gb|EEY53339.1| stromal cell-derived factor 2 precursor [Phytophthora infestans T30-4])

HSP 1 Score: 185.267 bits (469), Expect = 8.118e-55
Identity = 93/195 (47.69%), Postives = 118/195 (60.51%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM----------APGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H PS+Y LHSH+I++GSGSGQQSVT H + +D    W+V EGD+ P  E G P+ CG  IRL HM+T +NLHSH F +PLS+Q  EVS FG  G GD  D+W V C                 W+RG+ VR +H+ T   L T +K RF   NCP CPI GQQEV         T+W A +GI++
Sbjct:  101 VTCGSSIKLVHEPSRYRLHSHEITYGSGSGQQSVTTHMARNDVNSYWLVKEGDSAPVCEVGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRLDSWIVECQENQQCSADGHCEDDGLWKRGELVRLRHRSTNHLLTTSSKSRFDDSNCPRCPINGQQEVSGSSMRDENTLWFAGEGIYV 295          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|570317696|gb|ETO65644.1| (hypothetical protein F444_17069 [Phytophthora parasitica P1976] >gi|570941504|gb|ETP06761.1| hypothetical protein F441_16897 [Phytophthora parasitica CJ01A1] >gi|570971753|gb|ETP34868.1| hypothetical protein F442_16895 [Phytophthora parasitica P10297])

HSP 1 Score: 184.882 bits (468), Expect = 8.279e-55
Identity = 95/195 (48.72%), Postives = 121/195 (62.05%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H PS+Y LHSH+I++GSGSGQQSVTAH + +D    W+V EGD  P  + G P+ CG  IRL HM+T +NLHSH F +PLS+Q  EVS FG  G GD  D+W V C       A G       W+RG+ VR +H+ T   L T ++ RF   NCP CPI GQQEV    T    T+W A +GI++
Sbjct:   99 VTCGSSIKLVHEPSRYRLHSHEIAYGSGSGQQSVTAHMARNDVNSYWLVKEGDGAPVCDVGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRMDSWVVECQENQQCSAEGQCEDDGLWKRGELVRLRHRATNHLLTTSSRSRFDDSNCPRCPINGQQEVSGSSTRDENTLWFAGEGIYV 293          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|953498280|emb|CEG40277.1| (RxLR-like protein [Plasmopara halstedii])

HSP 1 Score: 181.8 bits (460), Expect = 1.777e-53
Identity = 93/195 (47.69%), Postives = 119/195 (61.03%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPL-SNQQEVSCFGDGGRGDSGDNWEVVCM------APGAK----FWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H  S+Y LHSH+I++GSGSGQQSVTAH + +D    W+V EGD  P  + G P+ CG  IRL HM+T +NLHSH F +PL S+  EVS FG  G GD  D+W V C       A G       W+RG+ VR +H+ T   L T +  RF   NCPNCPI GQQEV        +T+W A +GI++
Sbjct:  101 VTCGSSIKLVHEASRYRLHSHEITYGSGSGQQSVTAHMARNDVNSYWLVKEGDGAPVCQVGKPIQCGAIIRLEHMQTRRNLHSHMFKAPLTSHHLEVSAFGVAGEGDRMDSWVVECQENQQCSAEGQCEDDGLWKRGELVRLRHRSTNHLLSTSSSIRFDDSNCPNCPINGQQEVSATAMREGDTLWFAAEGIYV 295          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|1214706104|gb|OWZ17698.1| (Stromal cell-derived factor 2 precursor [Phytophthora megakarya])

HSP 1 Score: 180.644 bits (457), Expect = 5.418e-53
Identity = 93/195 (47.69%), Postives = 121/195 (62.05%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H  S+Y LHSH+I +G GSGQQSVT H + +D    W+V EGD +   + G P+ CG  IRL HM+T +NLHSH F +PLS+Q  EVS FG  G GD  D+W + C       A G       W+RG+ VRF+H+ T + L T +K RF   NCPNCPI GQQEV       A+T+W A +GI++
Sbjct:  101 VTCGSSIKLVHEASRYRLHSHEIQYGGGSGQQSVTTHMARNDVNSYWLVKEGDGETACQMGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQHLEVSAFGVAGEGDRLDSWILECQENQQCSAEGQCEDDGLWKRGELVRFRHRSTSQVLYTSSKSRFDDSNCPNCPINGQQEVSATSHRDADTLWFAGEGIYV 295          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|695394887|ref|XP_009521019.1| (hypothetical protein PHYSODRAFT_482323 [Phytophthora sojae] >gi|348685916|gb|EGZ25731.1| hypothetical protein PHYSODRAFT_482323 [Phytophthora sojae])

HSP 1 Score: 179.104 bits (453), Expect = 2.064e-52
Identity = 92/195 (47.18%), Postives = 118/195 (60.51%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H PS+Y LHSH+I +GSGS QQSVT H + +D    W+V EGD +   E G P+ CG  +RL HM+T +NLHSH F +PLS+Q  EVS FG  G GD  D W V C       A G       W+RG+ VRF+H+ T   L T +  RF   NCP+CPI GQQEV        +T+W A +GI++
Sbjct:  104 VTCGSSIKLVHEPSRYRLHSHEIQYGSGSQQQSVTTHMARNDVNSYWLVKEGDGEAACEVGKPIECGATVRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRLDTWVVECQENQQCSAEGQCEDDGLWKRGELVRFRHRSTNHLLSTSSTSRFDDSNCPHCPINGQQEVSASSFRNEDTLWFAGEGIYV 298          
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|673025074|ref|XP_008866498.1| (hypothetical protein H310_04097 [Aphanomyces invadans] >gi|574478064|gb|ETW05060.1| hypothetical protein H310_04097 [Aphanomyces invadans])

HSP 1 Score: 176.407 bits (446), Expect = 3.151e-51
Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 0
Query:    1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ--EVSCFGDGGRGDSGDNWEVVCM-------------APGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
            +T GS +KL H  S++ LHSH++++G+GSGQQSVTAHGS DD    W+V EGD     + G+ + CG+ IRL H+ T +NLHSH FSSPLSN +  EVS FG  G GDSGD+W V C              + G   W R + VR +H  +G++L+T+   RF Q NCP CPIVGQQEV   Q+    T+W A +GI++
Sbjct:  103 VTCGSTIKLVHEDSRFRLHSHEVNYGTGSGQQSVTAHGSRDDFNSYWLVKEGDGASPCDLGAKIRCGSTIRLEHVNTRRNLHSHDFSSPLSNGRYAEVSGFGVAGDGDSGDSWIVECENAQQCQATDKDCHSTGVPSWGRDELVRLRHVVSGKYLRTDHAVRFDQSNCPRCPIVGQQEVNAGQSLDDATLWFAGEGIYM 301          
The following BLAST results are available for this feature:
BLAST of EWM27941.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110283|gb|EWM27942.1|1.490e-145100.00cell-derived factor 2 like protein [Nannochloropsi... [more]
gi|553183532|ref|XP_005853916.1|4.127e-145100.00stromal cell-derived factor 2 [Nannochloropsis gad... [more]
gi|585110282|gb|EWM27941.1|1.575e-144100.00cell-derived factor 2 like protein [Nannochloropsi... [more]
gi|675206897|ref|XP_008912333.1|6.315e-5548.72hypothetical protein PPTG_16542 [Phytophthora para... [more]
gi|301111756|ref|XP_002904957.1|8.118e-5547.69stromal cell-derived factor 2 precursor [Phytophth... [more]
gi|570317696|gb|ETO65644.1|8.279e-5548.72hypothetical protein F444_17069 [Phytophthora para... [more]
gi|953498280|emb|CEG40277.1|1.777e-5347.69RxLR-like protein [Plasmopara halstedii][more]
gi|1214706104|gb|OWZ17698.1|5.418e-5347.69Stromal cell-derived factor 2 precursor [Phytophth... [more]
gi|695394887|ref|XP_009521019.1|2.064e-5247.18hypothetical protein PHYSODRAFT_482323 [Phytophtho... [more]
gi|673025074|ref|XP_008866498.1|3.151e-5147.74hypothetical protein H310_04097 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2709rna2709Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications