EWM27941.1, cds2701 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|585110283|gb|EWM27942.1| (cell-derived factor 2 like protein [Nannochloropsis gaditana]) HSP 1 Score: 413.69 bits (1062), Expect = 1.490e-145 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
Sbjct: 60 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 256
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|553183532|ref|XP_005853916.1| (stromal cell-derived factor 2 [Nannochloropsis gaditana CCMP526] >gi|422295144|gb|EKU22443.1| stromal cell-derived factor 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 411.379 bits (1056), Expect = 4.127e-145 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
Sbjct: 30 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 226
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|585110282|gb|EWM27941.1| (cell-derived factor 2 like protein [Nannochloropsis gaditana]) HSP 1 Score: 409.068 bits (1050), Expect = 1.575e-144 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL
Sbjct: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 197
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|675206897|ref|XP_008912333.1| (hypothetical protein PPTG_16542 [Phytophthora parasitica INRA-310] >gi|566014024|gb|ETI36935.1| hypothetical protein F443_17038 [Phytophthora parasitica P1569] >gi|567951425|gb|ETK77126.1| hypothetical protein L915_16568 [Phytophthora parasitica] >gi|567980117|gb|ETL30587.1| hypothetical protein L916_16469 [Phytophthora parasitica] >gi|568009616|gb|ETL83816.1| hypothetical protein L917_16295 [Phytophthora parasitica] >gi|568039517|gb|ETM37008.1| hypothetical protein L914_16400 [Phytophthora parasitica] >gi|568087425|gb|ETN02296.1| hypothetical protein PPTG_16542 [Phytophthora parasitica INRA-310] >gi|970659428|gb|KUF97065.1| Stromal cell-derived factor 2 [Phytophthora nicotianae]) HSP 1 Score: 185.267 bits (469), Expect = 6.315e-55 Identity = 95/195 (48.72%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H PS+Y LHSH+I++GSGSGQQSVTAH + +D W+V EGD P + G P+ CG IRL HM+T +NLHSH F +PLS+Q EVS FG G GD D+W V C A G W+RG+ VR +H+ T L T ++ RF NCP CPI GQQEV T T+W A +GI++
Sbjct: 99 VTCGSSIKLVHEPSRYRLHSHEIAYGSGSGQQSVTAHMARNDVNSYWLVKEGDGAPVCDVGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRMDSWVVECQENQQCSAEGQCEDDGLWKRGELVRLRHRATNHLLTTSSRSRFDDSNCPRCPINGQQEVSGSSTRDENTLWFAGEGIYV 293
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|301111756|ref|XP_002904957.1| (stromal cell-derived factor 2 precursor [Phytophthora infestans T30-4] >gi|262095287|gb|EEY53339.1| stromal cell-derived factor 2 precursor [Phytophthora infestans T30-4]) HSP 1 Score: 185.267 bits (469), Expect = 8.118e-55 Identity = 93/195 (47.69%), Postives = 118/195 (60.51%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM----------APGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H PS+Y LHSH+I++GSGSGQQSVT H + +D W+V EGD+ P E G P+ CG IRL HM+T +NLHSH F +PLS+Q EVS FG G GD D+W V C W+RG+ VR +H+ T L T +K RF NCP CPI GQQEV T+W A +GI++
Sbjct: 101 VTCGSSIKLVHEPSRYRLHSHEITYGSGSGQQSVTTHMARNDVNSYWLVKEGDSAPVCEVGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRLDSWIVECQENQQCSADGHCEDDGLWKRGELVRLRHRSTNHLLTTSSKSRFDDSNCPRCPINGQQEVSGSSMRDENTLWFAGEGIYV 295
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|570317696|gb|ETO65644.1| (hypothetical protein F444_17069 [Phytophthora parasitica P1976] >gi|570941504|gb|ETP06761.1| hypothetical protein F441_16897 [Phytophthora parasitica CJ01A1] >gi|570971753|gb|ETP34868.1| hypothetical protein F442_16895 [Phytophthora parasitica P10297]) HSP 1 Score: 184.882 bits (468), Expect = 8.279e-55 Identity = 95/195 (48.72%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H PS+Y LHSH+I++GSGSGQQSVTAH + +D W+V EGD P + G P+ CG IRL HM+T +NLHSH F +PLS+Q EVS FG G GD D+W V C A G W+RG+ VR +H+ T L T ++ RF NCP CPI GQQEV T T+W A +GI++
Sbjct: 99 VTCGSSIKLVHEPSRYRLHSHEIAYGSGSGQQSVTAHMARNDVNSYWLVKEGDGAPVCDVGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRMDSWVVECQENQQCSAEGQCEDDGLWKRGELVRLRHRATNHLLTTSSRSRFDDSNCPRCPINGQQEVSGSSTRDENTLWFAGEGIYV 293
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|953498280|emb|CEG40277.1| (RxLR-like protein [Plasmopara halstedii]) HSP 1 Score: 181.8 bits (460), Expect = 1.777e-53 Identity = 93/195 (47.69%), Postives = 119/195 (61.03%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPL-SNQQEVSCFGDGGRGDSGDNWEVVCM------APGAK----FWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H S+Y LHSH+I++GSGSGQQSVTAH + +D W+V EGD P + G P+ CG IRL HM+T +NLHSH F +PL S+ EVS FG G GD D+W V C A G W+RG+ VR +H+ T L T + RF NCPNCPI GQQEV +T+W A +GI++
Sbjct: 101 VTCGSSIKLVHEASRYRLHSHEITYGSGSGQQSVTAHMARNDVNSYWLVKEGDGAPVCQVGKPIQCGAIIRLEHMQTRRNLHSHMFKAPLTSHHLEVSAFGVAGEGDRMDSWVVECQENQQCSAEGQCEDDGLWKRGELVRLRHRSTNHLLSTSSSIRFDDSNCPNCPINGQQEVSATAMREGDTLWFAAEGIYV 295
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|1214706104|gb|OWZ17698.1| (Stromal cell-derived factor 2 precursor [Phytophthora megakarya]) HSP 1 Score: 180.644 bits (457), Expect = 5.418e-53 Identity = 93/195 (47.69%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H S+Y LHSH+I +G GSGQQSVT H + +D W+V EGD + + G P+ CG IRL HM+T +NLHSH F +PLS+Q EVS FG G GD D+W + C A G W+RG+ VRF+H+ T + L T +K RF NCPNCPI GQQEV A+T+W A +GI++
Sbjct: 101 VTCGSSIKLVHEASRYRLHSHEIQYGGGSGQQSVTTHMARNDVNSYWLVKEGDGETACQMGKPIECGATIRLEHMQTRRNLHSHMFKAPLSSQHLEVSAFGVAGEGDRLDSWILECQENQQCSAEGQCEDDGLWKRGELVRFRHRSTSQVLYTSSKSRFDDSNCPNCPINGQQEVSATSHRDADTLWFAGEGIYV 295
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|695394887|ref|XP_009521019.1| (hypothetical protein PHYSODRAFT_482323 [Phytophthora sojae] >gi|348685916|gb|EGZ25731.1| hypothetical protein PHYSODRAFT_482323 [Phytophthora sojae]) HSP 1 Score: 179.104 bits (453), Expect = 2.064e-52 Identity = 92/195 (47.18%), Postives = 118/195 (60.51%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ-EVSCFGDGGRGDSGDNWEVVCM------APGA----KFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H PS+Y LHSH+I +GSGS QQSVT H + +D W+V EGD + E G P+ CG +RL HM+T +NLHSH F +PLS+Q EVS FG G GD D W V C A G W+RG+ VRF+H+ T L T + RF NCP+CPI GQQEV +T+W A +GI++
Sbjct: 104 VTCGSSIKLVHEPSRYRLHSHEIQYGSGSQQQSVTTHMARNDVNSYWLVKEGDGEAACEVGKPIECGATVRLEHMQTRRNLHSHMFKAPLSSQNLEVSAFGVAGEGDRLDTWVVECQENQQCSAEGQCEDDGLWKRGELVRFRHRSTNHLLSTSSTSRFDDSNCPHCPINGQQEVSASSFRNEDTLWFAGEGIYV 298
BLAST of EWM27941.1 vs. NCBI_GenBank
Match: gi|673025074|ref|XP_008866498.1| (hypothetical protein H310_04097 [Aphanomyces invadans] >gi|574478064|gb|ETW05060.1| hypothetical protein H310_04097 [Aphanomyces invadans]) HSP 1 Score: 176.407 bits (446), Expect = 3.151e-51 Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 0
Query: 1 MTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQ--EVSCFGDGGRGDSGDNWEVVCM-------------APGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 184
+T GS +KL H S++ LHSH++++G+GSGQQSVTAHGS DD W+V EGD + G+ + CG+ IRL H+ T +NLHSH FSSPLSN + EVS FG G GDSGD+W V C + G W R + VR +H +G++L+T+ RF Q NCP CPIVGQQEV Q+ T+W A +GI++
Sbjct: 103 VTCGSTIKLVHEDSRFRLHSHEVNYGTGSGQQSVTAHGSRDDFNSYWLVKEGDGASPCDLGAKIRCGSTIRLEHVNTRRNLHSHDFSSPLSNGRYAEVSGFGVAGDGDSGDSWIVECENAQQCQATDKDCHSTGVPSWGRDELVRLRHVVSGKYLRTDHAVRFDQSNCPRCPIVGQQEVNAGQSLDDATLWFAGEGIYM 301 The following BLAST results are available for this feature:
BLAST of EWM27941.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|